Wall clock time and date at job start Tue Mar 31 2020 17:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47462 * 2 1 4 4 C 1.53005 * 109.47075 * 240.00032 * 2 1 3 5 5 O 1.45201 * 109.47134 * 120.00386 * 2 1 3 6 6 C 1.34633 * 117.00254 * 59.99732 * 5 2 1 7 7 O 1.21513 * 119.99567 * 359.97438 * 6 5 2 8 8 N 1.34778 * 120.00099 * 180.02562 * 6 5 2 9 9 C 1.46499 * 119.99781 * 179.97438 * 8 6 5 10 10 C 1.50701 * 109.47104 * 179.97438 * 9 8 6 11 11 O 1.21283 * 119.99864 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00269 * 180.02562 * 10 9 8 13 13 C 1.46499 * 120.00166 * 180.02562 * 12 10 9 14 14 C 1.50696 * 109.47459 * 179.97438 * 13 12 10 15 15 C 1.38629 * 119.75027 * 269.72930 * 14 13 12 16 16 C 1.37616 * 120.24726 * 179.71859 * 15 14 13 17 17 C 1.40713 * 119.74816 * 0.56746 * 16 15 14 18 18 C 1.41394 * 120.25067 * 179.67957 * 17 16 15 19 19 H 1.07997 * 120.00652 * 204.40025 * 18 17 16 20 20 C 1.39949 * 119.99607 * 24.40527 * 18 17 16 21 21 N 1.30829 * 120.00062 * 17.85475 * 20 18 17 22 22 Si 1.86798 * 120.00043 * 197.85528 * 20 18 17 23 23 H 1.48500 * 109.46985 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47140 * 119.99988 * 22 20 18 25 25 H 1.48498 * 109.47251 * 239.99840 * 22 20 18 26 26 C 1.40718 * 119.50848 * 359.70557 * 17 16 15 27 27 C 1.37619 * 119.74534 * 0.02562 * 26 17 16 28 28 H 1.09007 * 109.46446 * 300.00172 * 1 2 3 29 29 H 1.08996 * 109.47436 * 59.99419 * 1 2 3 30 30 H 1.08999 * 109.47336 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47407 * 180.02562 * 3 2 1 32 32 H 1.08995 * 109.47264 * 300.00129 * 3 2 1 33 33 H 1.09001 * 109.47372 * 59.99997 * 3 2 1 34 34 H 1.08999 * 109.46983 * 300.00149 * 4 2 1 35 35 H 1.08996 * 109.46540 * 60.00001 * 4 2 1 36 36 H 1.09002 * 109.47104 * 180.02562 * 4 2 1 37 37 H 0.97000 * 119.99623 * 0.02562 * 8 6 5 38 38 H 1.09003 * 109.47105 * 60.00024 * 9 8 6 39 39 H 1.08996 * 109.47367 * 299.99757 * 9 8 6 40 40 H 0.97000 * 119.99922 * 359.97438 * 12 10 9 41 41 H 1.09005 * 109.46964 * 59.99422 * 13 12 10 42 42 H 1.09001 * 109.47156 * 300.00127 * 13 12 10 43 43 H 1.08005 * 119.87755 * 359.97064 * 15 14 13 44 44 H 1.08008 * 120.12622 * 180.27959 * 16 15 14 45 45 H 0.96994 * 119.99970 * 179.97438 * 21 20 18 46 46 H 1.07995 * 120.12697 * 179.97438 * 26 17 16 47 47 H 1.08000 * 119.87543 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0140 -0.6846 1.1855 6 6 1.6522 -1.9724 1.3383 7 8 0.9508 -2.5094 0.5039 8 7 2.0672 -2.6655 2.4171 9 6 1.6730 -4.0666 2.5835 10 6 2.2642 -4.6065 3.8603 11 8 2.9471 -3.8911 4.5623 12 7 2.0341 -5.8842 4.2220 13 6 2.6083 -6.4089 5.4635 14 6 2.2031 -7.8502 5.6347 15 6 1.0382 -8.1605 6.3193 16 6 0.6554 -9.4730 6.4767 17 6 1.4575 -10.5022 5.9500 18 6 1.0778 -11.8546 6.1115 19 1 1.8256 -12.6331 6.0791 20 6 -0.2673 -12.1844 6.3131 21 7 -1.2044 -11.3227 6.0116 22 14 -0.7246 -13.8549 7.0129 23 1 0.5101 -14.6392 7.2687 24 1 -1.4669 -13.6719 8.2860 25 1 -1.5806 -14.5812 6.0408 26 6 2.6407 -10.1756 5.2619 27 6 3.0011 -8.8560 5.1117 28 1 -0.3632 0.5139 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6768 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2493 35 1 1.6766 -0.2074 -2.1392 36 1 3.1300 -0.7217 -1.2491 37 1 2.6262 -2.2364 3.0836 38 1 2.0395 -4.6500 1.7388 39 1 0.5862 -4.1355 2.6285 40 1 1.4876 -6.4563 3.6608 41 1 2.2416 -5.8258 6.3083 42 1 3.6952 -6.3395 5.4188 43 1 0.4268 -7.3692 6.7272 44 1 -0.2548 -9.7124 7.0066 45 1 -2.1366 -11.5514 6.1510 46 1 3.2640 -10.9575 4.8540 47 1 3.9085 -8.6029 4.5835 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496577812.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:50 Heat of formation + Delta-G solvation = -129.713821 kcal Electronic energy + Delta-G solvation = -27367.757827 eV Core-core repulsion = 23321.105190 eV Total energy + Delta-G solvation = -4046.652636 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.90351 -40.85578 -39.46839 -38.33674 -36.42272 -35.74311 -35.10955 -34.79480 -32.22605 -31.17621 -29.72179 -28.33211 -28.27306 -27.93548 -25.30240 -23.34635 -22.89293 -21.83406 -21.65873 -21.14828 -19.56793 -19.23864 -17.98338 -17.70203 -17.49751 -17.19451 -17.05559 -16.57622 -15.99449 -15.79397 -15.60844 -15.58600 -15.27396 -15.20939 -14.48573 -14.28697 -14.24837 -14.11817 -13.81791 -13.51914 -13.37857 -13.32615 -13.05217 -12.88703 -12.84738 -12.82714 -12.71666 -12.50717 -12.45113 -12.32147 -12.09424 -11.53209 -11.38425 -11.29868 -11.20077 -11.15070 -10.99236 -10.40274 -10.07236 -9.39139 -9.28023 -8.67456 -6.36962 0.79763 1.04181 1.14801 1.38947 1.46835 1.47207 1.53410 1.70522 2.19334 2.27546 2.75415 3.12975 3.62154 3.76860 3.77617 3.82303 3.97149 4.18688 4.25068 4.27854 4.34580 4.52649 4.57499 4.64966 4.67648 4.74876 4.79682 4.80434 4.87228 4.90635 4.99122 5.05724 5.14748 5.19344 5.31315 5.35134 5.36274 5.39261 5.44319 5.54467 5.68985 5.91556 6.09230 6.20267 6.29461 6.36745 6.50393 6.68507 6.92046 7.00890 7.09633 7.25811 8.28995 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.024794 B = 0.001712 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.039195 B =16346.729209 C =16894.835860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.123 3.877 3 C -0.136 4.136 4 C -0.180 4.180 5 O -0.369 6.369 6 C 0.652 3.348 7 O -0.587 6.587 8 N -0.698 5.698 9 C 0.123 3.877 10 C 0.511 3.489 11 O -0.576 6.576 12 N -0.705 5.705 13 C 0.194 3.806 14 C -0.229 4.229 15 C -0.082 4.082 16 C -0.193 4.193 17 C 0.085 3.915 18 C -0.496 4.496 19 H 0.075 0.925 20 C 0.037 3.963 21 N -0.818 5.818 22 Si 0.979 3.021 23 H -0.259 1.259 24 H -0.265 1.265 25 H -0.266 1.266 26 C -0.244 4.244 27 C -0.067 4.067 28 H 0.060 0.940 29 H 0.092 0.908 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.104 0.896 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.092 0.908 36 H 0.061 0.939 37 H 0.417 0.583 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.413 0.587 41 H 0.061 0.939 42 H 0.067 0.933 43 H 0.106 0.894 44 H 0.100 0.900 45 H 0.289 0.711 46 H 0.097 0.903 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.526 19.341 -10.651 22.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.087 3.913 3 C -0.193 4.193 4 C -0.237 4.237 5 O -0.283 6.283 6 C 0.405 3.595 7 O -0.478 6.478 8 N -0.360 5.360 9 C -0.003 4.003 10 C 0.297 3.703 11 O -0.457 6.457 12 N -0.356 5.356 13 C 0.071 3.929 14 C -0.230 4.230 15 C -0.100 4.100 16 C -0.212 4.212 17 C 0.082 3.918 18 C -0.525 4.525 19 H 0.094 0.906 20 C -0.179 4.179 21 N -0.444 5.444 22 Si 0.800 3.200 23 H -0.182 1.182 24 H -0.190 1.190 25 H -0.191 1.191 26 C -0.264 4.264 27 C -0.086 4.086 28 H 0.079 0.921 29 H 0.111 0.889 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.122 0.878 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.111 0.889 36 H 0.080 0.920 37 H 0.256 0.744 38 H 0.135 0.865 39 H 0.133 0.867 40 H 0.249 0.751 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.124 0.876 44 H 0.118 0.882 45 H 0.100 0.900 46 H 0.115 0.885 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.416 19.675 -10.610 22.484 hybrid contribution -0.464 -1.205 0.438 1.364 sum 1.953 18.470 -10.172 21.176 Atomic orbital electron populations 1.22483 0.93832 1.03795 1.03643 1.22479 0.94732 0.92731 0.81396 1.21893 1.02439 0.90633 1.04365 1.22482 1.01640 1.02306 0.97293 1.86326 1.71562 1.22779 1.47662 1.18005 0.78654 0.80991 0.81814 1.90910 1.41956 1.70958 1.43946 1.44313 1.55716 1.11857 1.24098 1.21049 1.02174 0.80969 0.96078 1.20634 0.80379 0.82195 0.87110 1.90682 1.41132 1.58441 1.55409 1.46223 1.52579 1.11609 1.25190 1.19804 0.97418 0.90066 0.85561 1.19203 0.99188 0.93516 1.11117 1.20774 0.95683 0.95411 0.98172 1.21264 1.01961 0.92555 1.05426 1.18024 0.91546 0.93948 0.88277 1.19919 0.93824 0.93547 1.45243 0.90648 1.26733 0.95804 1.02931 0.92435 1.69861 1.02219 1.37922 1.34389 0.85193 0.79039 0.77028 0.78704 1.18240 1.18957 1.19056 1.21167 1.01220 0.96002 1.07964 1.20704 0.98050 0.92154 0.97646 0.92050 0.88935 0.91823 0.91249 0.87779 0.91291 0.91816 0.88945 0.91990 0.74417 0.86537 0.86734 0.75100 0.92033 0.91508 0.87579 0.88217 0.90026 0.88494 0.86420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.96 8.37 71.98 0.60 -2.36 16 2 C 0.12 2.06 1.13 -10.79 -0.01 2.05 16 3 C -0.14 -1.45 8.85 71.98 0.64 -0.81 16 4 C -0.18 -2.93 8.37 71.98 0.60 -2.33 16 5 O -0.37 -8.07 9.94 -55.43 -0.55 -8.62 16 6 C 0.65 15.87 8.06 129.79 1.05 16.91 16 7 O -0.59 -16.18 11.88 19.80 0.24 -15.95 16 8 N -0.70 -15.64 5.53 -594.61 -3.29 -18.93 16 9 C 0.12 2.53 6.15 85.63 0.53 3.06 16 10 C 0.51 12.99 7.90 87.66 0.69 13.68 16 11 O -0.58 -18.16 15.67 -3.04 -0.05 -18.21 16 12 N -0.71 -18.42 5.55 -466.79 -2.59 -21.01 16 13 C 0.19 5.98 5.79 85.63 0.50 6.48 16 14 C -0.23 -8.57 5.27 -19.68 -0.10 -8.68 16 15 C -0.08 -3.44 9.67 22.22 0.21 -3.22 16 16 C -0.19 -9.56 8.70 22.73 0.20 -9.36 16 17 C 0.08 4.35 5.57 -21.29 -0.12 4.24 16 18 C -0.50 -25.85 9.05 23.46 0.21 -25.64 16 19 H 0.08 3.82 7.91 -2.91 -0.02 3.79 16 20 C 0.04 1.79 5.14 85.26 0.44 2.22 16 21 N -0.82 -41.14 10.95 21.83 0.24 -40.90 16 22 Si 0.98 36.95 29.60 68.60 2.03 38.98 16 23 H -0.26 -9.61 7.11 99.48 0.71 -8.91 16 24 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 25 H -0.27 -9.61 7.11 99.48 0.71 -8.90 16 26 C -0.24 -11.21 9.80 22.73 0.22 -10.99 16 27 C -0.07 -2.63 9.67 22.22 0.21 -2.42 16 28 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 29 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.06 1.40 5.88 -2.39 -0.01 1.38 16 31 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.07 0.72 8.14 -2.39 -0.02 0.71 16 34 H 0.06 1.39 5.88 -2.39 -0.01 1.37 16 35 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.06 0.96 8.14 -2.39 -0.02 0.95 16 37 H 0.42 9.41 7.55 -92.71 -0.70 8.71 16 38 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.41 9.86 8.46 -92.71 -0.78 9.07 16 41 H 0.06 1.94 8.08 -2.38 -0.02 1.92 16 42 H 0.07 2.03 8.08 -2.39 -0.02 2.01 16 43 H 0.11 4.02 8.06 -2.91 -0.02 4.00 16 44 H 0.10 5.25 6.16 -2.91 -0.02 5.24 16 45 H 0.29 13.09 8.30 -92.71 -0.77 12.32 16 46 H 0.10 4.26 8.06 -2.91 -0.02 4.23 16 47 H 0.12 3.93 8.06 -2.91 -0.02 3.90 16 Total: -1.00 -61.81 391.67 1.41 -60.40 By element: Atomic # 1 Polarization: 41.89 SS G_CDS: -0.49 Total: 41.41 kcal Atomic # 6 Polarization: -23.04 SS G_CDS: 5.87 Total: -17.17 kcal Atomic # 7 Polarization: -75.20 SS G_CDS: -5.64 Total: -80.84 kcal Atomic # 8 Polarization: -42.42 SS G_CDS: -0.36 Total: -42.78 kcal Atomic # 14 Polarization: 36.95 SS G_CDS: 2.03 Total: 38.98 kcal Total: -61.81 1.41 -60.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496577812.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.315 kcal (2) G-P(sol) polarization free energy of solvation -61.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds