Wall clock time and date at job start Tue Mar 31 2020 17:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47400 * 2 1 4 4 C 1.52998 * 109.47312 * 239.99571 * 2 1 3 5 5 O 1.45202 * 109.46931 * 119.99495 * 2 1 3 6 6 C 1.34638 * 116.99586 * 60.00200 * 5 2 1 7 7 O 1.21509 * 120.00428 * 359.97438 * 6 5 2 8 8 N 1.34783 * 119.99754 * 180.02562 * 6 5 2 9 9 C 1.46505 * 119.99837 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.46798 * 179.97438 * 9 8 6 11 11 C 1.50706 * 109.46899 * 179.97438 * 10 9 8 12 12 C 1.37959 * 120.07947 * 96.58594 * 11 10 9 13 13 C 1.38349 * 120.15363 * 180.25254 * 12 11 10 14 14 C 1.38399 * 120.30482 * 359.74453 * 13 12 11 15 15 C 1.37917 * 120.14947 * 359.97438 * 14 13 12 16 16 C 1.39621 * 120.07616 * 276.32786 * 11 10 9 17 17 C 1.47733 * 120.15185 * 0.02562 * 16 11 10 18 18 O 1.21592 * 119.99510 * 5.41944 * 17 16 11 19 19 N 1.34775 * 119.99937 * 185.41953 * 17 16 11 20 20 C 1.36872 * 119.99594 * 180.02562 * 19 17 16 21 21 H 1.08002 * 120.00583 * 359.72359 * 20 19 17 22 22 C 1.39051 * 119.99667 * 180.02562 * 20 19 17 23 23 N 1.31362 * 120.00369 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99759 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47456 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47016 * 120.00061 * 24 22 20 27 27 H 1.48498 * 109.47277 * 239.99885 * 24 22 20 28 28 H 1.08996 * 109.47188 * 300.00705 * 1 2 3 29 29 H 1.09008 * 109.46799 * 60.00152 * 1 2 3 30 30 H 1.08993 * 109.46974 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47165 * 179.97438 * 3 2 1 32 32 H 1.09004 * 109.46609 * 299.99432 * 3 2 1 33 33 H 1.08995 * 109.46787 * 59.99440 * 3 2 1 34 34 H 1.08998 * 109.46956 * 300.00316 * 4 2 1 35 35 H 1.08995 * 109.47270 * 60.00320 * 4 2 1 36 36 H 1.09003 * 109.47280 * 180.02562 * 4 2 1 37 37 H 0.96992 * 120.00016 * 359.97438 * 8 6 5 38 38 H 1.08994 * 109.46994 * 59.99858 * 9 8 6 39 39 H 1.08994 * 109.46937 * 299.99678 * 9 8 6 40 40 H 1.08999 * 109.47750 * 60.00122 * 10 9 8 41 41 H 1.09003 * 109.47047 * 299.99665 * 10 9 8 42 42 H 1.08000 * 119.92096 * 359.97438 * 12 11 10 43 43 H 1.07995 * 119.84964 * 179.75871 * 13 12 11 44 44 H 1.07998 * 119.92576 * 180.02562 * 14 13 12 45 45 H 1.08004 * 120.07701 * 180.02562 * 15 14 13 46 46 H 0.96998 * 120.00187 * 0.02562 * 19 17 16 47 47 H 0.96997 * 120.00014 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9722 1.3384 7 8 0.9508 -2.5094 0.5041 8 7 2.0671 -2.6653 2.4174 9 6 1.6739 -4.0668 2.5833 10 6 2.2738 -4.6146 3.8798 11 6 1.8688 -6.0561 4.0508 12 6 2.7213 -7.0656 3.6541 13 6 2.3489 -8.3894 3.8056 14 6 1.1223 -8.7107 4.3604 15 6 0.2628 -7.7116 4.7667 16 6 0.6321 -6.3731 4.6162 17 6 -0.2839 -5.2976 5.0482 18 8 -0.0061 -4.1355 4.8227 19 7 -1.4273 -5.6045 5.6921 20 6 -2.2762 -4.6080 6.0918 21 1 -2.0277 -3.5755 5.8952 22 6 -3.4557 -4.9246 6.7567 23 7 -3.7556 -6.1800 7.0008 24 14 -4.6139 -3.5645 7.3029 25 1 -4.0504 -2.2475 6.9115 26 1 -5.9366 -3.7503 6.6536 27 1 -4.7754 -3.6146 8.7782 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6768 1.9563 -0.8901 33 1 1.6767 1.9563 0.8899 34 1 1.6767 -1.7490 -1.2491 35 1 1.6768 -0.2076 -2.1392 36 1 3.1301 -0.7217 -1.2489 37 1 2.6266 -2.2364 3.0835 38 1 2.0411 -4.6496 1.7387 39 1 0.5870 -4.1364 2.6277 40 1 1.9069 -4.0319 4.7247 41 1 3.3607 -4.5451 3.8350 42 1 3.6797 -6.8219 3.2201 43 1 3.0184 -9.1757 3.4898 44 1 0.8380 -9.7461 4.4762 45 1 -0.6940 -7.9637 5.1998 46 1 -1.6487 -6.5315 5.8723 47 1 -4.5786 -6.4008 7.4642 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496950917.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:26 Heat of formation + Delta-G solvation = -101.023733 kcal Electronic energy + Delta-G solvation = -28890.223175 eV Core-core repulsion = 24844.814634 eV Total energy + Delta-G solvation = -4045.408541 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.56205 -39.61253 -37.39652 -37.28732 -35.15262 -34.21004 -33.86940 -32.21009 -31.52781 -30.39519 -28.25033 -27.48110 -27.38397 -25.33210 -23.76943 -22.89307 -21.75362 -20.91482 -19.89205 -19.47433 -18.18946 -17.87629 -16.67372 -16.50261 -16.07316 -15.50822 -15.15135 -14.93134 -14.71745 -14.45325 -14.42880 -14.10640 -13.93688 -13.68497 -13.42832 -13.30994 -12.78710 -12.58698 -12.47526 -12.28844 -12.20944 -11.93631 -11.88834 -11.69459 -11.51017 -11.40911 -11.30616 -11.23740 -11.20993 -10.90561 -10.71745 -10.39702 -10.30969 -10.29185 -9.87335 -9.65002 -8.80867 -8.57067 -8.43659 -8.26011 -8.06431 -6.59104 -3.91678 1.37575 1.65709 2.39850 3.10434 3.10986 3.20236 3.27302 3.68981 4.06488 4.32618 4.44196 4.68227 4.71896 4.85143 4.86801 5.10580 5.17525 5.24507 5.27642 5.37584 5.43497 5.47474 5.48355 5.60356 5.61579 5.67424 5.72218 5.80563 5.83534 5.89590 5.91040 6.04519 6.20756 6.26586 6.28898 6.34375 6.48485 6.55373 6.64790 6.68852 6.75203 6.78080 7.02691 7.26183 7.40643 7.70640 7.93752 8.47388 8.63865 9.03291 9.39260 9.94077 10.57793 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.008404 B = 0.003610 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3331.012127 B = 7753.968851 C =10574.600347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.136 3.864 3 C -0.140 4.140 4 C -0.182 4.182 5 O -0.368 6.368 6 C 0.649 3.351 7 O -0.571 6.571 8 N -0.700 5.700 9 C 0.156 3.844 10 C -0.094 4.094 11 C -0.042 4.042 12 C -0.124 4.124 13 C -0.121 4.121 14 C -0.126 4.126 15 C -0.103 4.103 16 C -0.091 4.091 17 C 0.462 3.538 18 O -0.586 6.586 19 N -0.542 5.542 20 C -0.292 4.292 21 H 0.109 0.891 22 C 0.023 3.977 23 N -0.889 5.889 24 Si 0.933 3.067 25 H -0.266 1.266 26 H -0.279 1.279 27 H -0.280 1.280 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.090 0.910 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.088 0.912 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.403 0.597 38 H 0.056 0.944 39 H 0.086 0.914 40 H 0.117 0.883 41 H 0.059 0.941 42 H 0.120 0.880 43 H 0.118 0.882 44 H 0.120 0.880 45 H 0.127 0.873 46 H 0.393 0.607 47 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.652 3.816 -9.755 16.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.099 3.901 3 C -0.197 4.197 4 C -0.240 4.240 5 O -0.284 6.284 6 C 0.401 3.599 7 O -0.461 6.461 8 N -0.357 5.357 9 C 0.034 3.966 10 C -0.131 4.131 11 C -0.045 4.045 12 C -0.142 4.142 13 C -0.140 4.140 14 C -0.144 4.144 15 C -0.122 4.122 16 C -0.094 4.094 17 C 0.251 3.749 18 O -0.474 6.474 19 N -0.175 5.175 20 C -0.422 4.422 21 H 0.127 0.873 22 C -0.180 4.180 23 N -0.529 5.529 24 Si 0.759 3.241 25 H -0.190 1.190 26 H -0.205 1.205 27 H -0.205 1.205 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.108 0.892 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.107 0.893 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.237 0.763 38 H 0.074 0.926 39 H 0.104 0.896 40 H 0.135 0.865 41 H 0.078 0.922 42 H 0.138 0.862 43 H 0.136 0.864 44 H 0.138 0.862 45 H 0.145 0.855 46 H 0.228 0.772 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 12.246 4.306 -10.245 16.537 hybrid contribution -0.636 0.009 0.725 0.964 sum 11.610 4.315 -9.521 15.622 Atomic orbital electron populations 1.22522 0.93983 1.05379 1.02308 1.21998 0.94455 0.91358 0.82253 1.21848 1.02009 0.92817 1.03013 1.22511 1.01281 1.03704 0.96472 1.86282 1.71750 1.24048 1.46277 1.18057 0.78970 0.80250 0.82592 1.90880 1.41039 1.70432 1.43740 1.44695 1.54983 1.13082 1.22973 1.21249 1.01931 0.77283 0.96102 1.20915 0.98780 0.93267 1.00120 1.19586 0.93069 0.94866 0.96937 1.20937 0.99541 0.92487 1.01221 1.21111 0.96685 0.96100 1.00061 1.21025 0.94448 0.99025 0.99886 1.21431 0.99767 0.92118 0.98918 1.20237 0.95368 0.93881 0.99949 1.17720 0.83475 0.88192 0.85523 1.90528 1.75187 1.19890 1.61802 1.41920 1.17258 1.10140 1.48190 1.19874 0.99172 0.90446 1.32733 0.87330 1.25381 0.98159 0.97451 0.97001 1.69593 1.25766 1.17069 1.40459 0.85745 0.79487 0.80625 0.78235 1.18997 1.20515 1.20543 0.92065 0.91413 0.89155 0.91647 0.90346 0.91463 0.89277 0.91379 0.92384 0.76276 0.92617 0.89602 0.86495 0.92206 0.86188 0.86420 0.86169 0.85540 0.77207 0.91484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.38 8.37 37.16 0.31 -2.07 16 2 C 0.14 1.68 1.13 -90.62 -0.10 1.57 16 3 C -0.14 -1.26 8.85 37.16 0.33 -0.93 16 4 C -0.18 -2.10 8.37 37.16 0.31 -1.78 16 5 O -0.37 -5.44 9.94 -40.32 -0.40 -5.84 16 6 C 0.65 10.91 8.06 54.06 0.44 11.35 16 7 O -0.57 -10.89 11.88 -19.28 -0.23 -11.12 16 8 N -0.70 -10.89 5.56 -65.28 -0.36 -11.25 16 9 C 0.16 2.63 5.22 -4.04 -0.02 2.61 16 10 C -0.09 -1.47 4.72 -27.88 -0.13 -1.60 16 11 C -0.04 -0.71 5.17 -104.21 -0.54 -1.24 16 12 C -0.12 -1.71 9.66 -39.64 -0.38 -2.09 16 13 C -0.12 -1.56 10.04 -39.48 -0.40 -1.96 16 14 C -0.13 -1.77 10.03 -39.64 -0.40 -2.16 16 15 C -0.10 -1.75 9.53 -39.17 -0.37 -2.12 16 16 C -0.09 -1.74 5.87 -104.97 -0.62 -2.36 16 17 C 0.46 10.79 7.64 -12.38 -0.09 10.69 16 18 O -0.59 -14.62 11.31 5.28 0.06 -14.56 16 19 N -0.54 -13.51 5.23 -11.87 -0.06 -13.57 16 20 C -0.29 -7.91 9.68 -15.00 -0.15 -8.05 16 21 H 0.11 3.06 7.15 -52.49 -0.38 2.69 16 22 C 0.02 0.61 5.50 -17.45 -0.10 0.51 16 23 N -0.89 -23.42 13.05 55.50 0.72 -22.69 16 24 Si 0.93 20.47 29.55 -169.99 -5.02 15.44 16 25 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 26 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 27 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.07 0.70 8.14 -51.92 -0.42 0.27 16 30 H 0.09 1.44 5.88 -51.93 -0.31 1.13 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.09 1.26 5.88 -51.93 -0.31 0.96 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.40 5.32 8.58 -40.82 -0.35 4.97 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.09 1.80 6.82 -51.93 -0.35 1.45 16 40 H 0.12 2.15 5.81 -51.93 -0.30 1.85 16 41 H 0.06 0.75 8.04 -51.93 -0.42 0.33 16 42 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 43 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 44 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 45 H 0.13 2.15 6.45 -52.48 -0.34 1.81 16 46 H 0.39 9.42 5.96 -40.82 -0.24 9.18 16 47 H 0.28 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 383.87 15.07 5.78 5.78 Total: -1.00 -30.60 383.87 -8.20 -38.79 By element: Atomic # 1 Polarization: 25.44 SS G_CDS: -6.78 Total: 18.66 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -1.91 Total: 0.36 kcal Atomic # 7 Polarization: -47.82 SS G_CDS: 0.30 Total: -47.52 kcal Atomic # 8 Polarization: -30.95 SS G_CDS: -0.57 Total: -31.52 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.60 -8.20 -38.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496950917.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.233 kcal (2) G-P(sol) polarization free energy of solvation -30.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds