Wall clock time and date at job start Tue Mar 31 2020 17:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47400 * 2 1 4 4 C 1.52998 * 109.47312 * 239.99571 * 2 1 3 5 5 O 1.45202 * 109.46931 * 119.99495 * 2 1 3 6 6 C 1.34638 * 116.99586 * 60.00200 * 5 2 1 7 7 O 1.21509 * 120.00428 * 359.97438 * 6 5 2 8 8 N 1.34783 * 119.99754 * 180.02562 * 6 5 2 9 9 C 1.46505 * 119.99837 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.46798 * 179.97438 * 9 8 6 11 11 C 1.50706 * 109.46899 * 179.97438 * 10 9 8 12 12 C 1.37959 * 120.07947 * 96.58594 * 11 10 9 13 13 C 1.38349 * 120.15363 * 180.25254 * 12 11 10 14 14 C 1.38399 * 120.30482 * 359.74453 * 13 12 11 15 15 C 1.37917 * 120.14947 * 359.97438 * 14 13 12 16 16 C 1.39621 * 120.07616 * 276.32786 * 11 10 9 17 17 C 1.47733 * 120.15185 * 0.02562 * 16 11 10 18 18 O 1.21592 * 119.99510 * 5.41944 * 17 16 11 19 19 N 1.34775 * 119.99937 * 185.41953 * 17 16 11 20 20 C 1.36872 * 119.99594 * 180.02562 * 19 17 16 21 21 H 1.08002 * 120.00583 * 359.72359 * 20 19 17 22 22 C 1.39051 * 119.99667 * 180.02562 * 20 19 17 23 23 N 1.31362 * 120.00369 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99759 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47456 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47016 * 120.00061 * 24 22 20 27 27 H 1.48498 * 109.47277 * 239.99885 * 24 22 20 28 28 H 1.08996 * 109.47188 * 300.00705 * 1 2 3 29 29 H 1.09008 * 109.46799 * 60.00152 * 1 2 3 30 30 H 1.08993 * 109.46974 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47165 * 179.97438 * 3 2 1 32 32 H 1.09004 * 109.46609 * 299.99432 * 3 2 1 33 33 H 1.08995 * 109.46787 * 59.99440 * 3 2 1 34 34 H 1.08998 * 109.46956 * 300.00316 * 4 2 1 35 35 H 1.08995 * 109.47270 * 60.00320 * 4 2 1 36 36 H 1.09003 * 109.47280 * 180.02562 * 4 2 1 37 37 H 0.96992 * 120.00016 * 359.97438 * 8 6 5 38 38 H 1.08994 * 109.46994 * 59.99858 * 9 8 6 39 39 H 1.08994 * 109.46937 * 299.99678 * 9 8 6 40 40 H 1.08999 * 109.47750 * 60.00122 * 10 9 8 41 41 H 1.09003 * 109.47047 * 299.99665 * 10 9 8 42 42 H 1.08000 * 119.92096 * 359.97438 * 12 11 10 43 43 H 1.07995 * 119.84964 * 179.75871 * 13 12 11 44 44 H 1.07998 * 119.92576 * 180.02562 * 14 13 12 45 45 H 1.08004 * 120.07701 * 180.02562 * 15 14 13 46 46 H 0.96998 * 120.00187 * 0.02562 * 19 17 16 47 47 H 0.96997 * 120.00014 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9722 1.3384 7 8 0.9508 -2.5094 0.5041 8 7 2.0671 -2.6653 2.4174 9 6 1.6739 -4.0668 2.5833 10 6 2.2738 -4.6146 3.8798 11 6 1.8688 -6.0561 4.0508 12 6 2.7213 -7.0656 3.6541 13 6 2.3489 -8.3894 3.8056 14 6 1.1223 -8.7107 4.3604 15 6 0.2628 -7.7116 4.7667 16 6 0.6321 -6.3731 4.6162 17 6 -0.2839 -5.2976 5.0482 18 8 -0.0061 -4.1355 4.8227 19 7 -1.4273 -5.6045 5.6921 20 6 -2.2762 -4.6080 6.0918 21 1 -2.0277 -3.5755 5.8952 22 6 -3.4557 -4.9246 6.7567 23 7 -3.7556 -6.1800 7.0008 24 14 -4.6139 -3.5645 7.3029 25 1 -4.0504 -2.2475 6.9115 26 1 -5.9366 -3.7503 6.6536 27 1 -4.7754 -3.6146 8.7782 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6768 1.9563 -0.8901 33 1 1.6767 1.9563 0.8899 34 1 1.6767 -1.7490 -1.2491 35 1 1.6768 -0.2076 -2.1392 36 1 3.1301 -0.7217 -1.2489 37 1 2.6266 -2.2364 3.0835 38 1 2.0411 -4.6496 1.7387 39 1 0.5870 -4.1364 2.6277 40 1 1.9069 -4.0319 4.7247 41 1 3.3607 -4.5451 3.8350 42 1 3.6797 -6.8219 3.2201 43 1 3.0184 -9.1757 3.4898 44 1 0.8380 -9.7461 4.4762 45 1 -0.6940 -7.9637 5.1998 46 1 -1.6487 -6.5315 5.8723 47 1 -4.5786 -6.4008 7.4642 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496950917.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:25 Heat of formation + Delta-G solvation = -121.194677 kcal Electronic energy + Delta-G solvation = -28891.097853 eV Core-core repulsion = 24844.814634 eV Total energy + Delta-G solvation = -4046.283219 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.80072 -41.08233 -38.98708 -38.51373 -36.59156 -35.93829 -35.03659 -33.68485 -33.16018 -31.81715 -29.53888 -28.37390 -28.28755 -27.18365 -25.12188 -24.26694 -22.97268 -22.25978 -21.24476 -20.95109 -19.97528 -19.18618 -18.23094 -17.68847 -17.34372 -16.97319 -16.55780 -16.37750 -16.06056 -15.81332 -15.66208 -15.53678 -15.42964 -15.24866 -14.76595 -14.45469 -14.11922 -13.90909 -13.63062 -13.55854 -13.33668 -13.15549 -12.98738 -12.91633 -12.86113 -12.69188 -12.61852 -12.56282 -12.40130 -12.31086 -12.23370 -12.11859 -11.85270 -11.53241 -11.39092 -11.12795 -10.22214 -10.12614 -10.01193 -9.79848 -9.62190 -8.54860 -5.98443 0.06960 0.45750 1.21298 1.35783 1.37959 1.52316 1.78141 2.16008 2.24931 2.88619 3.15121 3.21833 3.32076 3.75921 3.80001 3.93479 3.94932 3.96777 4.12039 4.17182 4.27587 4.31321 4.50028 4.56037 4.60896 4.63708 4.67825 4.74804 4.75705 4.83369 4.87842 4.95713 5.03040 5.07888 5.14666 5.25022 5.28190 5.30150 5.35490 5.38830 5.50487 5.58577 5.59173 5.69735 5.96720 6.10493 6.44143 6.53523 7.05558 7.36144 7.48311 8.04980 8.63104 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.008404 B = 0.003610 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3331.012127 B = 7753.968851 C =10574.600347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.122 3.878 3 C -0.133 4.133 4 C -0.177 4.177 5 O -0.369 6.369 6 C 0.644 3.356 7 O -0.598 6.598 8 N -0.694 5.694 9 C 0.168 3.832 10 C -0.084 4.084 11 C -0.051 4.051 12 C -0.118 4.118 13 C -0.098 4.098 14 C -0.124 4.124 15 C -0.113 4.113 16 C -0.129 4.129 17 C 0.465 3.535 18 O -0.608 6.608 19 N -0.561 5.561 20 C -0.329 4.329 21 H 0.083 0.917 22 C -0.012 4.012 23 N -0.915 5.915 24 Si 0.995 3.005 25 H -0.273 1.273 26 H -0.270 1.270 27 H -0.267 1.267 28 H 0.054 0.946 29 H 0.096 0.904 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.105 0.895 33 H 0.065 0.935 34 H 0.057 0.943 35 H 0.093 0.907 36 H 0.068 0.932 37 H 0.415 0.585 38 H 0.067 0.933 39 H 0.034 0.966 40 H 0.084 0.916 41 H 0.102 0.898 42 H 0.159 0.841 43 H 0.164 0.836 44 H 0.152 0.848 45 H 0.115 0.885 46 H 0.394 0.606 47 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.370 3.256 -11.035 19.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.086 3.914 3 C -0.190 4.190 4 C -0.234 4.234 5 O -0.283 6.283 6 C 0.397 3.603 7 O -0.490 6.490 8 N -0.353 5.353 9 C 0.046 3.954 10 C -0.122 4.122 11 C -0.053 4.053 12 C -0.135 4.135 13 C -0.117 4.117 14 C -0.141 4.141 15 C -0.132 4.132 16 C -0.133 4.133 17 C 0.255 3.745 18 O -0.496 6.496 19 N -0.196 5.196 20 C -0.459 4.459 21 H 0.101 0.899 22 C -0.213 4.213 23 N -0.555 5.555 24 Si 0.818 3.182 25 H -0.198 1.198 26 H -0.196 1.196 27 H -0.192 1.192 28 H 0.073 0.927 29 H 0.114 0.886 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.123 0.877 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.112 0.888 36 H 0.087 0.913 37 H 0.251 0.749 38 H 0.085 0.915 39 H 0.053 0.947 40 H 0.103 0.897 41 H 0.120 0.880 42 H 0.176 0.824 43 H 0.182 0.818 44 H 0.170 0.830 45 H 0.133 0.867 46 H 0.229 0.771 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 14.994 3.748 -11.518 19.275 hybrid contribution -1.281 0.115 0.971 1.612 sum 13.713 3.863 -10.547 17.726 Atomic orbital electron populations 1.22499 0.94859 1.03261 1.03422 1.22462 0.94075 0.93129 0.81775 1.21876 1.02651 0.90198 1.04267 1.22451 1.01861 1.02008 0.97087 1.86302 1.71588 1.22784 1.47672 1.18256 0.78659 0.80913 0.82473 1.90873 1.42141 1.71207 1.44777 1.44633 1.54837 1.12804 1.23038 1.20986 0.98912 0.78240 0.97278 1.20796 1.00971 0.92520 0.97871 1.19814 0.92591 0.96066 0.96814 1.21363 1.00210 0.92053 0.99915 1.21687 0.96202 0.96895 0.96872 1.21405 0.94319 0.99677 0.98728 1.21477 1.00220 0.92080 0.99445 1.20034 0.96195 0.93450 1.03574 1.18584 0.83247 0.89172 0.83510 1.90506 1.75711 1.21522 1.61884 1.41921 1.18045 1.09727 1.49930 1.19761 1.00971 0.89965 1.35195 0.89892 1.26118 0.98909 0.99713 0.96557 1.69651 1.26427 1.18231 1.41230 0.84850 0.77528 0.77519 0.78326 1.19762 1.19568 1.19214 0.92692 0.88566 0.92776 0.90629 0.87670 0.91631 0.92386 0.88830 0.91334 0.74920 0.91461 0.94702 0.89737 0.87985 0.82359 0.81840 0.83009 0.86746 0.77066 0.91016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.76 8.37 71.98 0.60 -4.15 16 2 C 0.12 2.90 1.13 -10.79 -0.01 2.88 16 3 C -0.13 -2.09 8.85 71.98 0.64 -1.45 16 4 C -0.18 -3.87 8.37 71.98 0.60 -3.26 16 5 O -0.37 -10.91 9.94 -55.48 -0.55 -11.46 16 6 C 0.64 22.32 8.06 129.79 1.05 23.37 16 7 O -0.60 -23.95 11.88 19.81 0.24 -23.71 16 8 N -0.69 -22.12 5.56 -590.85 -3.29 -25.40 16 9 C 0.17 5.82 5.22 86.38 0.45 6.28 16 10 C -0.08 -2.63 4.72 29.85 0.14 -2.49 16 11 C -0.05 -1.64 5.17 -19.59 -0.10 -1.74 16 12 C -0.12 -2.75 9.66 22.23 0.21 -2.54 16 13 C -0.10 -2.04 10.04 22.33 0.22 -1.82 16 14 C -0.12 -3.08 10.03 22.23 0.22 -2.86 16 15 C -0.11 -3.85 9.53 22.54 0.21 -3.63 16 16 C -0.13 -5.10 5.87 -20.09 -0.12 -5.22 16 17 C 0.46 23.25 7.64 86.75 0.66 23.91 16 18 O -0.61 -32.67 11.31 -4.00 -0.05 -32.72 16 19 N -0.56 -30.08 5.23 -309.72 -1.62 -31.70 16 20 C -0.33 -19.07 9.68 84.10 0.81 -18.26 16 21 H 0.08 5.09 7.15 -2.91 -0.02 5.07 16 22 C -0.01 -0.68 5.50 84.96 0.47 -0.21 16 23 N -0.92 -49.99 13.05 21.68 0.28 -49.71 16 24 Si 0.99 43.51 29.55 68.60 2.03 45.54 16 25 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 26 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 27 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 28 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.10 1.87 8.14 -2.38 -0.02 1.85 16 30 H 0.05 1.81 5.88 -2.39 -0.01 1.80 16 31 H 0.07 1.05 8.14 -2.39 -0.02 1.04 16 32 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 33 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.06 1.66 5.88 -2.39 -0.01 1.65 16 35 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.41 11.01 8.58 -92.71 -0.80 10.21 16 38 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.03 1.57 6.82 -2.39 -0.02 1.55 16 40 H 0.08 3.24 5.81 -2.39 -0.01 3.22 16 41 H 0.10 2.29 8.04 -2.39 -0.02 2.27 16 42 H 0.16 2.55 8.06 -2.91 -0.02 2.53 16 43 H 0.16 2.04 8.06 -2.91 -0.02 2.02 16 44 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 45 H 0.11 4.09 6.45 -2.91 -0.02 4.07 16 46 H 0.39 20.32 5.96 -92.71 -0.55 19.77 16 47 H 0.28 14.20 8.31 -92.71 -0.77 13.43 16 Total: -1.00 -73.77 383.87 2.77 -71.00 By element: Atomic # 1 Polarization: 49.70 SS G_CDS: -0.34 Total: 49.36 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: 6.07 Total: 8.80 kcal Atomic # 7 Polarization: -102.19 SS G_CDS: -4.62 Total: -106.81 kcal Atomic # 8 Polarization: -67.53 SS G_CDS: -0.36 Total: -67.89 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -73.77 2.77 -71.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496950917.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.197 kcal (2) G-P(sol) polarization free energy of solvation -73.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds