Wall clock time and date at job start Tue Mar 31 2020 17:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46719 * 2 1 4 4 H 1.08998 * 109.47221 * 309.18144 * 3 2 1 5 5 C 1.53002 * 109.46825 * 189.18521 * 3 2 1 6 6 C 1.52992 * 109.47542 * 69.18629 * 3 2 1 7 7 H 1.08995 * 109.47504 * 173.74764 * 6 3 2 8 8 N 1.46499 * 109.47322 * 53.74609 * 6 3 2 9 9 C 1.34776 * 119.99872 * 98.39276 * 8 6 3 10 10 O 1.21513 * 120.00311 * 4.60815 * 9 8 6 11 11 O 1.34638 * 119.99738 * 184.60524 * 9 8 6 12 12 C 1.45203 * 117.00008 * 180.02562 * 11 9 8 13 13 C 1.50704 * 109.46995 * 293.75051 * 6 3 2 14 14 O 1.21277 * 120.00377 * 115.58685 * 13 6 3 15 15 N 1.34780 * 119.99581 * 295.57650 * 13 6 3 16 16 C 1.39245 * 119.99989 * 185.39002 * 15 13 6 17 17 C 1.39474 * 119.83387 * 213.02676 * 16 15 13 18 18 C 1.36383 * 120.16513 * 179.76157 * 17 16 15 19 19 C 1.40867 * 119.82653 * 0.51617 * 18 17 16 20 20 C 1.41154 * 120.16059 * 179.71499 * 19 18 17 21 21 H 1.08002 * 119.99817 * 210.43536 * 20 19 18 22 22 C 1.39910 * 119.99819 * 30.44320 * 20 19 18 23 23 N 1.30873 * 120.00158 * 8.92809 * 22 20 19 24 24 Si 1.86797 * 119.99729 * 188.93204 * 22 20 19 25 25 H 1.48504 * 109.47361 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47369 * 119.99614 * 24 22 20 27 27 H 1.48504 * 109.47104 * 239.99956 * 24 22 20 28 28 C 1.40866 * 119.67219 * 359.74333 * 19 18 17 29 29 C 1.36376 * 119.83225 * 359.97438 * 28 19 18 30 30 H 1.09003 * 109.47807 * 286.62500 * 1 2 3 31 31 H 1.09004 * 109.47303 * 46.62653 * 1 2 3 32 32 H 1.09005 * 109.47127 * 166.62104 * 1 2 3 33 33 H 1.08994 * 109.47147 * 239.99577 * 2 1 3 34 34 H 1.09003 * 109.46831 * 119.99376 * 2 1 3 35 35 H 1.09002 * 109.46995 * 300.24329 * 5 3 2 36 36 H 1.09004 * 109.47025 * 180.24391 * 5 3 2 37 37 H 1.09003 * 109.47172 * 60.24715 * 5 3 2 38 38 H 0.97004 * 120.00343 * 278.39437 * 8 6 3 39 39 H 1.09001 * 109.46712 * 59.99866 * 12 11 9 40 40 H 1.09001 * 109.47300 * 180.02562 * 12 11 9 41 41 H 1.09000 * 109.46965 * 300.00106 * 12 11 9 42 42 H 0.97000 * 120.00312 * 5.40340 * 15 13 6 43 43 H 1.08001 * 119.92022 * 0.02833 * 17 16 15 44 44 H 1.08002 * 120.07932 * 180.25613 * 18 17 16 45 45 H 0.96997 * 119.99530 * 179.97438 * 23 22 20 46 46 H 1.08005 * 120.08005 * 179.97438 * 28 19 18 47 47 H 1.07998 * 119.91730 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5489 2.0015 -0.7966 5 6 3.5525 1.4487 -0.2303 6 6 1.7267 2.0943 1.3483 7 1 2.1860 3.0818 1.3899 8 7 2.2604 1.2616 2.4290 9 6 3.4454 1.5680 2.9933 10 8 4.0311 2.5806 2.6647 11 8 3.9800 0.7520 3.9212 12 6 5.2584 1.1450 4.4867 13 6 0.2340 2.2273 1.5071 14 8 -0.3394 1.6163 2.3839 15 7 -0.4638 3.0255 0.6749 16 6 -1.8232 3.2369 0.8899 17 6 -2.6762 3.4272 -0.1971 18 6 -4.0096 3.6299 0.0054 19 6 -4.5228 3.6577 1.3169 20 6 -5.9007 3.8731 1.5349 21 1 -6.2340 4.3696 2.4342 22 6 -6.8346 3.4431 0.5860 23 7 -6.4522 2.6908 -0.4143 24 14 -8.6272 3.9431 0.7467 25 1 -8.7990 4.7882 1.9557 26 1 -9.0369 4.7108 -0.4566 27 1 -9.4711 2.7273 0.8693 28 6 -3.6541 3.4702 2.4098 29 6 -2.3240 3.2627 2.1914 30 1 -0.3635 0.2940 0.9847 31 1 -0.3634 0.7058 -0.7470 32 1 -0.3633 -0.9998 -0.2378 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 4.0432 0.8861 0.5639 36 1 3.9165 2.4762 -0.2260 37 1 3.7754 0.9884 -1.1929 38 1 1.7610 0.4896 2.7384 39 1 5.1575 2.1153 4.9730 40 1 5.5755 0.4024 5.2189 41 1 6.0018 1.2122 3.6924 42 1 -0.0190 3.4526 -0.0739 43 1 -2.2806 3.4096 -1.2019 44 1 -4.6695 3.7730 -0.8375 45 1 -7.0998 2.3925 -1.0719 46 1 -4.0404 3.4907 3.4182 47 1 -1.6566 3.1192 3.0283 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000497051323.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:43 Heat of formation + Delta-G solvation = -96.489185 kcal Electronic energy + Delta-G solvation = -29448.268349 eV Core-core repulsion = 25403.056440 eV Total energy + Delta-G solvation = -4045.211908 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.09365 -39.96179 -37.91951 -36.85565 -36.03104 -34.62206 -33.66377 -32.96068 -30.40984 -29.65466 -29.27520 -28.23646 -26.97753 -24.77938 -23.46313 -22.01771 -21.71209 -20.93198 -20.27320 -19.67761 -18.96327 -17.48200 -17.35996 -16.92357 -16.62429 -16.12154 -15.78766 -15.25014 -15.02488 -14.35954 -14.22630 -14.01729 -13.82236 -13.63142 -13.41301 -13.14286 -12.83700 -12.73907 -12.53182 -12.27369 -12.17752 -12.05034 -11.83384 -11.62338 -11.44711 -11.20702 -11.11686 -11.02478 -10.94828 -10.83292 -10.77864 -10.64964 -10.38118 -10.03985 -9.60824 -9.56337 -9.36913 -9.11792 -8.91208 -7.59425 -6.96257 -6.72121 -4.35524 1.96308 2.42503 2.66800 2.93116 3.04657 3.07252 3.12374 3.26971 3.58442 3.93223 4.11052 4.55049 4.62279 4.65970 4.75084 4.92760 5.00243 5.03305 5.21442 5.31653 5.34678 5.43523 5.59709 5.63549 5.65720 5.76247 5.91536 6.05685 6.06443 6.13519 6.14944 6.21279 6.28194 6.36667 6.58511 6.70755 6.85459 7.01337 7.13990 7.22969 7.26733 7.55800 7.64727 7.80184 8.00301 8.15469 8.21112 8.24804 8.54108 8.63633 8.86704 8.94386 10.20924 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.023234 B = 0.002577 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.854014 B =10861.877952 C =11439.178950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.117 4.117 3 C -0.101 4.101 4 H 0.088 0.912 5 C -0.140 4.140 6 C 0.145 3.855 7 H 0.122 0.878 8 N -0.683 5.683 9 C 0.652 3.348 10 O -0.574 6.574 11 O -0.371 6.371 12 C 0.057 3.943 13 C 0.505 3.495 14 O -0.525 6.525 15 N -0.642 5.642 16 C -0.001 4.001 17 C -0.114 4.114 18 C -0.145 4.145 19 C 0.105 3.895 20 C -0.458 4.458 21 H 0.078 0.922 22 C 0.071 3.929 23 N -0.802 5.802 24 Si 0.912 3.088 25 H -0.261 1.261 26 H -0.273 1.273 27 H -0.275 1.275 28 C -0.210 4.210 29 C -0.079 4.079 30 H 0.087 0.913 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.051 0.949 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.416 0.584 39 H 0.063 0.937 40 H 0.101 0.899 41 H 0.062 0.938 42 H 0.396 0.604 43 H 0.091 0.909 44 H 0.123 0.877 45 H 0.279 0.721 46 H 0.095 0.905 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.021 -3.656 0.021 18.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.154 4.154 3 C -0.121 4.121 4 H 0.107 0.893 5 C -0.198 4.198 6 C 0.037 3.963 7 H 0.140 0.860 8 N -0.343 5.343 9 C 0.405 3.595 10 O -0.463 6.463 11 O -0.285 6.285 12 C -0.037 4.037 13 C 0.291 3.709 14 O -0.403 6.403 15 N -0.284 5.284 16 C -0.093 4.093 17 C -0.134 4.134 18 C -0.165 4.165 19 C 0.103 3.897 20 C -0.488 4.488 21 H 0.096 0.904 22 C -0.145 4.145 23 N -0.428 5.428 24 Si 0.736 3.264 25 H -0.185 1.185 26 H -0.198 1.198 27 H -0.200 1.200 28 C -0.230 4.230 29 C -0.099 4.099 30 H 0.105 0.895 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.254 0.746 39 H 0.082 0.918 40 H 0.120 0.880 41 H 0.081 0.919 42 H 0.230 0.770 43 H 0.109 0.891 44 H 0.141 0.859 45 H 0.090 0.910 46 H 0.113 0.887 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 17.888 -3.725 0.344 18.275 hybrid contribution -0.727 -0.035 -0.265 0.775 sum 17.161 -3.761 0.079 17.568 Atomic orbital electron populations 1.22354 0.94702 1.02037 1.05100 1.21572 0.96739 0.95091 1.02047 1.21665 0.97610 0.97753 0.95040 0.89334 1.21783 0.94198 1.02422 1.01365 1.20920 0.92059 0.96825 0.86515 0.86016 1.44174 1.19147 1.33060 1.37898 1.17998 0.81899 0.81411 0.78230 1.90988 1.62716 1.26773 1.65793 1.86257 1.38387 1.50481 1.53348 1.23191 0.80712 1.01804 0.98029 1.20231 0.88447 0.79290 0.82967 1.90693 1.70385 1.45105 1.34101 1.42938 1.09139 1.46471 1.29856 1.17130 0.81206 1.16924 0.94005 1.20223 0.94066 1.04064 0.95067 1.20954 0.92608 1.04769 0.98140 1.17692 0.93052 0.87909 0.91064 1.19583 0.90983 1.33586 1.04667 0.90434 1.25901 1.01538 0.92984 0.94083 1.69806 1.36604 1.25504 1.10925 0.86205 0.81599 0.79219 0.79345 1.18493 1.19820 1.20006 1.20718 0.93217 1.11076 0.97960 1.20248 0.95584 0.99786 0.94243 0.89473 0.92443 0.92980 0.91832 0.91881 0.92977 0.91995 0.92330 0.74638 0.91798 0.88022 0.91887 0.76993 0.89090 0.85901 0.91022 0.88664 0.88016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.56 8.63 37.16 0.32 -2.23 16 2 C -0.12 -1.28 5.29 -26.73 -0.14 -1.42 16 3 C -0.10 -1.05 2.35 -90.62 -0.21 -1.26 16 4 H 0.09 0.83 7.42 -51.93 -0.39 0.45 16 5 C -0.14 -1.35 8.58 37.16 0.32 -1.03 16 6 C 0.15 1.82 2.34 -69.09 -0.16 1.65 16 7 H 0.12 1.54 7.14 -51.93 -0.37 1.17 16 8 N -0.68 -8.63 3.67 -59.87 -0.22 -8.85 16 9 C 0.65 8.60 7.42 54.05 0.40 9.00 16 10 O -0.57 -8.62 15.26 -19.28 -0.29 -8.91 16 11 O -0.37 -4.27 10.62 -40.32 -0.43 -4.70 16 12 C 0.06 0.46 10.56 101.05 1.07 1.53 16 13 C 0.50 7.98 4.20 -10.98 -0.05 7.93 16 14 O -0.53 -10.12 11.84 5.56 0.07 -10.05 16 15 N -0.64 -10.32 5.09 -9.74 -0.05 -10.37 16 16 C 0.00 -0.01 6.29 -83.57 -0.53 -0.54 16 17 C -0.11 -2.47 9.89 -39.79 -0.39 -2.87 16 18 C -0.14 -3.60 8.59 -39.26 -0.34 -3.94 16 19 C 0.11 2.76 5.54 -106.80 -0.59 2.17 16 20 C -0.46 -11.98 9.04 -37.85 -0.34 -12.33 16 21 H 0.08 1.96 7.86 -52.49 -0.41 1.55 16 22 C 0.07 1.77 5.27 -17.33 -0.09 1.67 16 23 N -0.80 -20.44 10.85 55.55 0.60 -19.84 16 24 Si 0.91 18.56 29.57 -169.99 -5.03 13.53 16 25 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 26 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 27 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 28 C -0.21 -5.18 9.74 -39.26 -0.38 -5.57 16 29 C -0.08 -1.81 8.57 -39.79 -0.34 -2.15 16 30 H 0.09 1.46 4.36 -51.93 -0.23 1.23 16 31 H 0.06 0.82 7.87 -51.93 -0.41 0.41 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 34 H 0.06 0.69 6.75 -51.93 -0.35 0.34 16 35 H 0.05 0.55 6.83 -51.93 -0.35 0.20 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.42 5.21 7.61 -40.82 -0.31 4.90 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.40 5.02 8.29 -40.82 -0.34 4.68 16 43 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 44 H 0.12 3.16 6.27 -52.49 -0.33 2.83 16 45 H 0.28 6.47 8.30 -40.82 -0.34 6.14 16 46 H 0.10 2.26 8.06 -52.48 -0.42 1.83 16 47 H 0.10 2.31 6.39 -52.49 -0.34 1.98 16 LS Contribution 378.69 15.07 5.71 5.71 Total: -1.00 -30.11 378.69 -7.86 -37.97 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: -6.76 Total: 14.89 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: -1.46 Total: -9.38 kcal Atomic # 7 Polarization: -39.39 SS G_CDS: 0.33 Total: -39.06 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: -0.66 Total: -23.66 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.53 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.11 -7.86 -37.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497051323.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.516 kcal (2) G-P(sol) polarization free energy of solvation -30.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds