Wall clock time and date at job start Tue Mar 31 2020 17:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46719 * 2 1 4 4 H 1.08998 * 109.47221 * 309.18144 * 3 2 1 5 5 C 1.53002 * 109.46825 * 189.18521 * 3 2 1 6 6 C 1.52992 * 109.47542 * 69.18629 * 3 2 1 7 7 H 1.08995 * 109.47504 * 173.74764 * 6 3 2 8 8 N 1.46499 * 109.47322 * 53.74609 * 6 3 2 9 9 C 1.34776 * 119.99872 * 98.39276 * 8 6 3 10 10 O 1.21513 * 120.00311 * 4.60815 * 9 8 6 11 11 O 1.34638 * 119.99738 * 184.60524 * 9 8 6 12 12 C 1.45203 * 117.00008 * 180.02562 * 11 9 8 13 13 C 1.50704 * 109.46995 * 293.75051 * 6 3 2 14 14 O 1.21277 * 120.00377 * 115.58685 * 13 6 3 15 15 N 1.34780 * 119.99581 * 295.57650 * 13 6 3 16 16 C 1.39245 * 119.99989 * 185.39002 * 15 13 6 17 17 C 1.39474 * 119.83387 * 213.02676 * 16 15 13 18 18 C 1.36383 * 120.16513 * 179.76157 * 17 16 15 19 19 C 1.40867 * 119.82653 * 0.51617 * 18 17 16 20 20 C 1.41154 * 120.16059 * 179.71499 * 19 18 17 21 21 H 1.08002 * 119.99817 * 210.43536 * 20 19 18 22 22 C 1.39910 * 119.99819 * 30.44320 * 20 19 18 23 23 N 1.30873 * 120.00158 * 8.92809 * 22 20 19 24 24 Si 1.86797 * 119.99729 * 188.93204 * 22 20 19 25 25 H 1.48504 * 109.47361 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47369 * 119.99614 * 24 22 20 27 27 H 1.48504 * 109.47104 * 239.99956 * 24 22 20 28 28 C 1.40866 * 119.67219 * 359.74333 * 19 18 17 29 29 C 1.36376 * 119.83225 * 359.97438 * 28 19 18 30 30 H 1.09003 * 109.47807 * 286.62500 * 1 2 3 31 31 H 1.09004 * 109.47303 * 46.62653 * 1 2 3 32 32 H 1.09005 * 109.47127 * 166.62104 * 1 2 3 33 33 H 1.08994 * 109.47147 * 239.99577 * 2 1 3 34 34 H 1.09003 * 109.46831 * 119.99376 * 2 1 3 35 35 H 1.09002 * 109.46995 * 300.24329 * 5 3 2 36 36 H 1.09004 * 109.47025 * 180.24391 * 5 3 2 37 37 H 1.09003 * 109.47172 * 60.24715 * 5 3 2 38 38 H 0.97004 * 120.00343 * 278.39437 * 8 6 3 39 39 H 1.09001 * 109.46712 * 59.99866 * 12 11 9 40 40 H 1.09001 * 109.47300 * 180.02562 * 12 11 9 41 41 H 1.09000 * 109.46965 * 300.00106 * 12 11 9 42 42 H 0.97000 * 120.00312 * 5.40340 * 15 13 6 43 43 H 1.08001 * 119.92022 * 0.02833 * 17 16 15 44 44 H 1.08002 * 120.07932 * 180.25613 * 18 17 16 45 45 H 0.96997 * 119.99530 * 179.97438 * 23 22 20 46 46 H 1.08005 * 120.08005 * 179.97438 * 28 19 18 47 47 H 1.07998 * 119.91730 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5489 2.0015 -0.7966 5 6 3.5525 1.4487 -0.2303 6 6 1.7267 2.0943 1.3483 7 1 2.1860 3.0818 1.3899 8 7 2.2604 1.2616 2.4290 9 6 3.4454 1.5680 2.9933 10 8 4.0311 2.5806 2.6647 11 8 3.9800 0.7520 3.9212 12 6 5.2584 1.1450 4.4867 13 6 0.2340 2.2273 1.5071 14 8 -0.3394 1.6163 2.3839 15 7 -0.4638 3.0255 0.6749 16 6 -1.8232 3.2369 0.8899 17 6 -2.6762 3.4272 -0.1971 18 6 -4.0096 3.6299 0.0054 19 6 -4.5228 3.6577 1.3169 20 6 -5.9007 3.8731 1.5349 21 1 -6.2340 4.3696 2.4342 22 6 -6.8346 3.4431 0.5860 23 7 -6.4522 2.6908 -0.4143 24 14 -8.6272 3.9431 0.7467 25 1 -8.7990 4.7882 1.9557 26 1 -9.0369 4.7108 -0.4566 27 1 -9.4711 2.7273 0.8693 28 6 -3.6541 3.4702 2.4098 29 6 -2.3240 3.2627 2.1914 30 1 -0.3635 0.2940 0.9847 31 1 -0.3634 0.7058 -0.7470 32 1 -0.3633 -0.9998 -0.2378 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 4.0432 0.8861 0.5639 36 1 3.9165 2.4762 -0.2260 37 1 3.7754 0.9884 -1.1929 38 1 1.7610 0.4896 2.7384 39 1 5.1575 2.1153 4.9730 40 1 5.5755 0.4024 5.2189 41 1 6.0018 1.2122 3.6924 42 1 -0.0190 3.4526 -0.0739 43 1 -2.2806 3.4096 -1.2019 44 1 -4.6695 3.7730 -0.8375 45 1 -7.0998 2.3925 -1.0719 46 1 -4.0404 3.4907 3.4182 47 1 -1.6566 3.1192 3.0283 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000497051323.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:42 Heat of formation + Delta-G solvation = -114.887486 kcal Electronic energy + Delta-G solvation = -29449.066159 eV Core-core repulsion = 25403.056440 eV Total energy + Delta-G solvation = -4046.009718 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.23062 -41.15030 -39.43881 -38.11777 -37.04915 -36.23365 -34.86287 -34.52301 -31.56979 -31.32289 -30.91819 -29.26703 -27.97141 -26.44009 -24.45347 -23.54916 -22.88986 -22.53488 -21.64346 -20.74622 -20.09512 -19.24272 -18.71988 -17.93251 -17.84172 -17.43161 -16.99527 -16.85047 -16.17022 -15.75347 -15.52808 -15.33348 -14.89646 -14.73362 -14.54607 -14.48956 -14.19367 -13.98265 -13.93231 -13.63701 -13.60094 -13.24709 -13.01223 -12.91144 -12.86452 -12.79003 -12.54995 -12.46128 -11.97120 -11.85977 -11.78505 -11.72712 -11.61528 -11.51690 -11.36334 -11.17561 -10.91152 -10.64779 -10.24320 -9.45754 -8.77270 -8.55010 -6.29256 0.76903 1.03921 1.14750 1.39734 1.40999 1.54291 1.63863 1.73638 2.22950 2.28776 2.79135 3.19881 3.55338 3.65584 3.73693 3.76895 4.05089 4.29967 4.36657 4.38258 4.39647 4.41471 4.50010 4.56331 4.69668 4.71886 4.76360 4.91208 4.93600 5.02572 5.10412 5.13855 5.14427 5.15300 5.27801 5.29006 5.33460 5.38517 5.42303 5.50604 5.67879 5.88695 6.02683 6.11226 6.24763 6.38896 6.63427 6.69062 6.95833 6.99309 7.18744 7.30274 8.39302 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.023234 B = 0.002577 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.854014 B =10861.877952 C =11439.178950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.110 4.110 3 C -0.095 4.095 4 H 0.105 0.895 5 C -0.133 4.133 6 C 0.155 3.845 7 H 0.127 0.873 8 N -0.683 5.683 9 C 0.652 3.348 10 O -0.593 6.593 11 O -0.377 6.377 12 C 0.049 3.951 13 C 0.510 3.490 14 O -0.558 6.558 15 N -0.635 5.635 16 C 0.025 3.975 17 C -0.111 4.111 18 C -0.162 4.162 19 C 0.073 3.927 20 C -0.497 4.497 21 H 0.071 0.929 22 C 0.031 3.969 23 N -0.833 5.833 24 Si 0.984 3.016 25 H -0.261 1.261 26 H -0.262 1.262 27 H -0.269 1.269 28 C -0.226 4.226 29 C -0.090 4.090 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.083 0.917 34 H 0.062 0.938 35 H 0.040 0.960 36 H 0.060 0.940 37 H 0.077 0.923 38 H 0.416 0.584 39 H 0.060 0.940 40 H 0.134 0.866 41 H 0.067 0.933 42 H 0.417 0.583 43 H 0.126 0.874 44 H 0.110 0.890 45 H 0.286 0.714 46 H 0.092 0.908 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.876 -4.017 -1.143 20.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.148 4.148 3 C -0.115 4.115 4 H 0.124 0.876 5 C -0.190 4.190 6 C 0.047 3.953 7 H 0.145 0.855 8 N -0.342 5.342 9 C 0.406 3.594 10 O -0.484 6.484 11 O -0.290 6.290 12 C -0.044 4.044 13 C 0.298 3.702 14 O -0.437 6.437 15 N -0.280 5.280 16 C -0.068 4.068 17 C -0.131 4.131 18 C -0.182 4.182 19 C 0.071 3.929 20 C -0.527 4.527 21 H 0.089 0.911 22 C -0.182 4.182 23 N -0.460 5.460 24 Si 0.805 3.195 25 H -0.185 1.185 26 H -0.186 1.186 27 H -0.194 1.194 28 C -0.246 4.246 29 C -0.110 4.110 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.102 0.898 34 H 0.081 0.919 35 H 0.060 0.940 36 H 0.079 0.921 37 H 0.096 0.904 38 H 0.254 0.746 39 H 0.078 0.922 40 H 0.152 0.848 41 H 0.086 0.914 42 H 0.255 0.745 43 H 0.144 0.856 44 H 0.128 0.872 45 H 0.097 0.903 46 H 0.110 0.890 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 19.798 -4.090 -0.827 20.233 hybrid contribution -1.078 0.003 0.162 1.090 sum 18.719 -4.087 -0.664 19.172 Atomic orbital electron populations 1.22286 0.96890 1.01792 1.02963 1.21532 0.94478 0.95726 1.03060 1.21693 0.98621 0.97327 0.93838 0.87647 1.21720 0.92907 1.02433 1.01990 1.20892 0.88963 0.97567 0.87860 0.85518 1.44192 1.19152 1.32894 1.37973 1.18061 0.81822 0.81252 0.78282 1.90970 1.63280 1.27633 1.66556 1.86271 1.39783 1.50212 1.52745 1.23528 0.79340 1.02852 0.98726 1.20819 0.89789 0.77980 0.81645 1.90692 1.71455 1.46178 1.35385 1.42813 1.07315 1.46962 1.30907 1.17121 0.83310 1.13513 0.92893 1.20481 0.92994 1.02704 0.96952 1.20949 0.93924 1.06029 0.97260 1.17988 0.93647 0.89279 0.92022 1.19773 0.91835 1.35505 1.05580 0.91069 1.26696 1.05666 0.92411 0.93398 1.69852 1.38289 1.26223 1.11673 0.85128 0.75965 0.78919 0.79482 1.18500 1.18641 1.19382 1.20827 0.94128 1.11915 0.97746 1.20345 0.95003 1.00258 0.95444 0.92458 0.92877 0.92999 0.89802 0.91904 0.94049 0.92065 0.90402 0.74621 0.92158 0.84804 0.91412 0.74512 0.85596 0.87168 0.90301 0.89011 0.87975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.76 8.63 71.98 0.62 -4.13 16 2 C -0.11 -2.13 5.29 30.59 0.16 -1.96 16 3 C -0.10 -1.69 2.35 -10.80 -0.03 -1.72 16 4 H 0.11 1.57 7.42 -2.39 -0.02 1.55 16 5 C -0.13 -2.12 8.58 71.98 0.62 -1.51 16 6 C 0.16 3.58 2.34 44.24 0.10 3.68 16 7 H 0.13 2.91 7.14 -2.39 -0.02 2.89 16 8 N -0.68 -16.32 3.67 -573.74 -2.11 -18.42 16 9 C 0.65 16.29 7.42 129.79 0.96 17.25 16 10 O -0.59 -16.92 15.26 19.80 0.30 -16.61 16 11 O -0.38 -8.11 10.62 -55.47 -0.59 -8.69 16 12 C 0.05 0.69 10.56 113.37 1.20 1.89 16 13 C 0.51 15.47 4.20 87.66 0.37 15.83 16 14 O -0.56 -21.37 11.84 -3.02 -0.04 -21.41 16 15 N -0.64 -19.27 5.09 -303.11 -1.54 -20.81 16 16 C 0.03 1.03 6.29 38.56 0.24 1.27 16 17 C -0.11 -4.74 9.89 22.13 0.22 -4.52 16 18 C -0.16 -8.20 8.59 22.48 0.19 -8.01 16 19 C 0.07 3.97 5.54 -21.28 -0.12 3.86 16 20 C -0.50 -27.10 9.04 23.39 0.21 -26.89 16 21 H 0.07 3.79 7.86 -2.91 -0.02 3.77 16 22 C 0.03 1.59 5.27 85.24 0.45 2.04 16 23 N -0.83 -43.40 10.85 21.82 0.24 -43.16 16 24 Si 0.98 38.62 29.57 68.60 2.03 40.65 16 25 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 26 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 27 H -0.27 -10.21 7.11 99.48 0.71 -9.51 16 28 C -0.23 -11.63 9.74 22.48 0.22 -11.41 16 29 C -0.09 -4.23 8.57 22.13 0.19 -4.04 16 30 H 0.06 1.87 4.36 -2.39 -0.01 1.86 16 31 H 0.05 1.40 7.87 -2.38 -0.02 1.38 16 32 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 33 H 0.08 1.33 8.12 -2.39 -0.02 1.31 16 34 H 0.06 1.23 6.75 -2.39 -0.02 1.22 16 35 H 0.04 0.76 6.83 -2.39 -0.02 0.74 16 36 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 37 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.42 10.07 7.61 -92.71 -0.71 9.36 16 39 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.42 9.30 8.29 -92.71 -0.77 8.53 16 43 H 0.13 4.42 8.06 -2.91 -0.02 4.40 16 44 H 0.11 5.82 6.27 -2.91 -0.02 5.80 16 45 H 0.29 13.46 8.30 -92.71 -0.77 12.69 16 46 H 0.09 4.60 8.06 -2.91 -0.02 4.58 16 47 H 0.10 4.72 6.39 -2.91 -0.02 4.70 16 Total: -1.00 -67.45 378.69 3.45 -64.00 By element: Atomic # 1 Polarization: 43.29 SS G_CDS: -0.46 Total: 42.83 kcal Atomic # 6 Polarization: -23.98 SS G_CDS: 5.61 Total: -18.36 kcal Atomic # 7 Polarization: -78.98 SS G_CDS: -3.41 Total: -82.39 kcal Atomic # 8 Polarization: -46.39 SS G_CDS: -0.32 Total: -46.72 kcal Atomic # 14 Polarization: 38.62 SS G_CDS: 2.03 Total: 40.65 kcal Total: -67.45 3.45 -64.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497051323.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.885 kcal (2) G-P(sol) polarization free energy of solvation -67.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds