Wall clock time and date at job start Tue Mar 31 2020 17:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45198 * 109.47511 * 2 1 4 4 C 1.34748 * 117.00031 * 180.02562 * 3 2 1 5 5 O 1.21517 * 120.00374 * 0.02562 * 4 3 2 6 6 C 1.47382 * 120.00270 * 180.02562 * 4 3 2 7 7 C 1.39752 * 120.20154 * 2.62854 * 6 4 3 8 8 C 1.37777 * 119.91480 * 180.27426 * 7 6 4 9 9 C 1.38579 * 120.33640 * 359.72817 * 8 7 6 10 10 C 1.38018 * 120.41959 * 359.97438 * 9 8 7 11 11 C 1.38845 * 120.07514 * 0.02562 * 10 9 8 12 12 N 1.39255 * 120.17040 * 179.97438 * 11 10 9 13 13 C 1.34774 * 120.00027 * 323.20099 * 12 11 10 14 14 O 1.21277 * 119.99853 * 5.14345 * 13 12 11 15 15 C 1.50696 * 120.00097 * 185.14978 * 13 12 11 16 16 N 1.46897 * 109.47109 * 179.97438 * 15 13 12 17 17 C 1.46903 * 111.00049 * 183.02755 * 16 15 13 18 18 H 1.09009 * 109.47040 * 35.14263 * 17 16 15 19 19 C 1.50704 * 109.47253 * 155.14070 * 17 16 15 20 20 H 1.07998 * 119.99845 * 0.02562 * 19 17 16 21 21 C 1.37875 * 119.99922 * 180.02562 * 19 17 16 22 22 N 1.31512 * 120.00146 * 0.02562 * 21 19 17 23 23 Si 1.86804 * 119.99870 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.46708 * 59.99922 * 23 21 19 25 25 H 1.48497 * 109.46962 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47085 * 300.00113 * 23 21 19 27 27 C 1.53002 * 109.47267 * 275.14506 * 17 16 15 28 28 C 1.53000 * 109.47049 * 303.59303 * 27 17 16 29 29 H 1.09000 * 109.46996 * 59.99683 * 1 2 3 30 30 H 1.08997 * 109.47335 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46839 * 299.99985 * 1 2 3 32 32 H 1.09000 * 109.46933 * 239.99578 * 2 1 3 33 33 H 1.09000 * 109.46996 * 120.00317 * 2 1 3 34 34 H 1.08003 * 120.04128 * 359.97438 * 7 6 4 35 35 H 1.08000 * 119.82804 * 179.74337 * 8 7 6 36 36 H 1.08004 * 119.78808 * 180.02562 * 9 8 7 37 37 H 1.08002 * 119.96181 * 180.02562 * 10 9 8 38 38 H 0.97003 * 119.99556 * 143.19540 * 12 11 10 39 39 H 1.08999 * 109.47389 * 59.99505 * 15 13 12 40 40 H 1.08995 * 109.47270 * 299.99972 * 15 13 12 41 41 H 1.00897 * 111.00454 * 306.98526 * 16 15 13 42 42 H 0.97005 * 119.99867 * 179.97438 * 22 21 19 43 43 H 1.08991 * 109.47296 * 63.59762 * 27 17 16 44 44 H 1.09007 * 109.46847 * 183.59833 * 27 17 16 45 45 H 1.08998 * 109.47065 * 174.75881 * 28 27 17 46 46 H 1.08997 * 109.47025 * 294.76010 * 28 27 17 47 47 H 1.09007 * 109.46647 * 54.75716 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3499 1.5454 -0.0005 5 8 4.0902 0.5817 -0.0015 6 6 3.9134 2.9072 0.0000 7 6 3.0673 4.0181 0.0565 8 6 3.6002 5.2886 0.0509 9 6 4.9727 5.4718 -0.0047 10 6 5.8213 4.3845 -0.0547 11 6 5.3029 3.0964 -0.0500 12 7 6.1573 1.9980 -0.1009 13 6 7.2782 2.0501 -0.8475 14 8 7.5913 3.0834 -1.3999 15 6 8.1423 0.8245 -0.9960 16 7 9.2942 1.1383 -1.8518 17 6 10.1223 -0.0539 -2.0780 18 1 9.4826 -0.9345 -2.1387 19 6 10.8858 0.1021 -3.3679 20 1 10.7681 0.9975 -3.9602 21 6 11.7347 -0.8982 -3.7918 22 7 11.8777 -1.9888 -3.0708 23 14 12.6806 -0.7051 -5.3911 24 1 13.5523 0.4943 -5.3087 25 1 13.5177 -1.9102 -5.6196 26 1 11.7241 -0.5457 -6.5157 27 6 11.1074 -0.2181 -0.9188 28 6 11.9448 1.0545 -0.7771 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.9969 3.8808 0.0995 35 1 2.9448 6.1462 0.0904 36 1 5.3809 6.4717 -0.0082 37 1 6.8898 4.5358 -0.0975 38 1 5.9458 1.1954 0.4011 39 1 7.5604 0.0225 -1.4501 40 1 8.4943 0.5069 -0.0145 41 1 8.9953 1.5422 -2.7268 42 1 12.4747 -2.6927 -3.3693 43 1 10.5558 -0.3948 0.0044 44 1 11.7642 -1.0650 -1.1175 45 1 12.5807 0.9746 0.1045 46 1 12.5666 1.1808 -1.6634 47 1 11.2836 1.9146 -0.6716 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000516876371.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:58 Heat of formation + Delta-G solvation = -90.465390 kcal Electronic energy + Delta-G solvation = -28529.628385 eV Core-core repulsion = 24484.677689 eV Total energy + Delta-G solvation = -4044.950697 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.17274 -39.99160 -38.45229 -36.87746 -36.07355 -34.63210 -32.60116 -32.40267 -31.22122 -30.82418 -29.88416 -27.23992 -25.26774 -24.65020 -23.38081 -23.10120 -22.52528 -21.27325 -20.28303 -19.00327 -18.25376 -17.74126 -17.16798 -16.94043 -16.82450 -16.05087 -15.60480 -15.15756 -14.95878 -14.57211 -14.45588 -14.38944 -13.87047 -13.70514 -13.44029 -13.26077 -13.12822 -12.91265 -12.85264 -12.35104 -12.27131 -12.10046 -11.94336 -11.79000 -11.74907 -11.47432 -10.90871 -10.85762 -10.82006 -10.79399 -10.40013 -10.30930 -10.09605 -9.89190 -9.53314 -9.36105 -9.23069 -8.79374 -8.45548 -8.33918 -7.29017 -6.01358 -4.06880 0.43833 1.12074 2.30433 2.35085 2.75937 3.07304 3.33204 3.37186 3.41011 3.59708 4.33705 4.41896 4.58383 4.60891 4.62315 4.76269 4.91545 4.92489 5.04133 5.19588 5.26126 5.28368 5.38837 5.39485 5.40762 5.59368 5.69898 5.84224 5.90599 5.96504 6.01841 6.10357 6.24735 6.35371 6.51188 6.71529 6.76767 6.86255 7.21103 7.25022 7.42858 7.47604 7.49765 7.73354 7.79213 7.84070 8.26119 8.27987 8.35488 8.63575 9.01320 9.57981 11.04514 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013823 B = 0.002593 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.069165 B =10794.989734 C =11924.929308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.353 6.353 4 C 0.516 3.484 5 O -0.510 6.510 6 C -0.171 4.171 7 C -0.044 4.044 8 C -0.158 4.158 9 C -0.061 4.061 10 C -0.137 4.137 11 C 0.227 3.773 12 N -0.673 5.673 13 C 0.515 3.485 14 O -0.505 6.505 15 C 0.046 3.954 16 N -0.668 5.668 17 C 0.217 3.783 18 H 0.002 0.998 19 C -0.512 4.512 20 H 0.060 0.940 21 C 0.063 3.937 22 N -0.890 5.890 23 Si 0.895 3.105 24 H -0.276 1.276 25 H -0.288 1.288 26 H -0.278 1.278 27 C -0.105 4.105 28 C -0.122 4.122 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.138 0.862 35 H 0.130 0.870 36 H 0.132 0.868 37 H 0.151 0.849 38 H 0.422 0.578 39 H 0.056 0.944 40 H 0.097 0.903 41 H 0.341 0.659 42 H 0.261 0.739 43 H 0.009 0.991 44 H 0.090 0.910 45 H 0.013 0.987 46 H 0.050 0.950 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.578 8.843 9.973 26.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.012 4.012 3 O -0.270 6.270 4 C 0.363 3.637 5 O -0.399 6.399 6 C -0.175 4.175 7 C -0.063 4.063 8 C -0.176 4.176 9 C -0.080 4.080 10 C -0.157 4.157 11 C 0.129 3.871 12 N -0.323 5.323 13 C 0.304 3.696 14 O -0.377 6.377 15 C -0.087 4.087 16 N -0.302 5.302 17 C 0.109 3.891 18 H 0.020 0.980 19 C -0.551 4.551 20 H 0.078 0.922 21 C -0.138 4.138 22 N -0.529 5.529 23 Si 0.723 3.277 24 H -0.201 1.201 25 H -0.214 1.214 26 H -0.204 1.204 27 C -0.143 4.143 28 C -0.179 4.179 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.156 0.844 35 H 0.148 0.852 36 H 0.150 0.850 37 H 0.169 0.831 38 H 0.264 0.736 39 H 0.073 0.927 40 H 0.115 0.885 41 H 0.160 0.840 42 H 0.071 0.929 43 H 0.027 0.973 44 H 0.108 0.892 45 H 0.032 0.968 46 H 0.070 0.930 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -21.590 9.200 10.050 25.530 hybrid contribution -0.172 -1.121 -1.198 1.650 sum -21.762 8.079 8.852 24.844 Atomic orbital electron populations 1.21811 0.92488 1.03115 1.03516 1.23072 0.95362 0.79782 1.02966 1.86529 1.23572 1.32637 1.84292 1.20998 0.80676 0.89509 0.72551 1.90729 1.59913 1.42598 1.46709 1.18912 0.91996 0.90766 1.15803 1.21238 0.99696 0.91172 0.94174 1.21088 0.95400 0.96976 1.04174 1.21369 0.93256 0.99095 0.94267 1.21390 1.02184 0.90061 1.02114 1.17765 0.87352 0.88501 0.93521 1.44013 1.22638 1.16991 1.48632 1.21413 0.79805 0.91463 0.76905 1.90668 1.69816 1.31724 1.45525 1.21819 0.92800 0.92264 1.01811 1.60550 1.16780 1.32380 1.20447 1.19188 0.90341 0.85141 0.94392 0.98010 1.21136 1.25519 1.03329 1.05085 0.92167 1.24875 0.96674 0.95115 0.97174 1.69868 1.37879 1.07209 1.37932 0.86600 0.79921 0.77446 0.83699 1.20145 1.21357 1.20359 1.21474 0.98910 0.98928 0.95025 1.21460 0.98858 0.99092 0.98531 0.91422 0.90091 0.91460 0.90942 0.90990 0.84385 0.85162 0.84969 0.83145 0.73620 0.92673 0.88513 0.84007 0.92876 0.97251 0.89201 0.96778 0.93039 0.93096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 10.29 37.16 0.38 -0.44 16 2 C 0.06 0.51 6.20 37.16 0.23 0.74 16 3 O -0.35 -3.64 9.47 -40.62 -0.38 -4.02 16 4 C 0.52 6.38 7.89 34.45 0.27 6.65 16 5 O -0.51 -7.25 13.72 -19.28 -0.26 -7.51 16 6 C -0.17 -2.04 5.89 -104.83 -0.62 -2.66 16 7 C -0.04 -0.41 9.61 -39.18 -0.38 -0.79 16 8 C -0.16 -1.31 10.02 -39.62 -0.40 -1.71 16 9 C -0.06 -0.59 10.03 -39.54 -0.40 -0.99 16 10 C -0.14 -1.75 8.67 -39.44 -0.34 -2.09 16 11 C 0.23 3.08 6.28 -83.48 -0.52 2.55 16 12 N -0.67 -9.75 4.59 -9.68 -0.04 -9.79 16 13 C 0.52 8.82 7.70 -10.99 -0.08 8.73 16 14 O -0.50 -9.84 13.66 5.56 0.08 -9.76 16 15 C 0.05 0.83 6.00 -4.98 -0.03 0.80 16 16 N -0.67 -14.60 4.97 -109.22 -0.54 -15.14 16 17 C 0.22 5.41 2.30 -68.86 -0.16 5.25 16 18 H 0.00 0.06 7.75 -51.92 -0.40 -0.34 16 19 C -0.51 -13.94 7.60 -34.44 -0.26 -14.20 16 20 H 0.06 1.65 7.62 -52.49 -0.40 1.25 16 21 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 22 N -0.89 -25.18 11.30 55.43 0.63 -24.56 16 23 Si 0.90 21.43 29.54 -169.99 -5.02 16.40 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 C -0.10 -2.54 5.59 -26.73 -0.15 -2.69 16 28 C -0.12 -2.78 9.51 37.16 0.35 -2.43 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.14 0.99 7.61 -52.48 -0.40 0.59 16 35 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 36 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 37 H 0.15 2.16 6.33 -52.49 -0.33 1.82 16 38 H 0.42 5.70 6.49 -40.82 -0.26 5.43 16 39 H 0.06 0.99 7.98 -51.93 -0.41 0.57 16 40 H 0.10 1.65 7.57 -51.93 -0.39 1.25 16 41 H 0.34 7.72 7.81 -39.29 -0.31 7.41 16 42 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 43 H 0.01 0.20 7.60 -51.93 -0.39 -0.20 16 44 H 0.09 2.42 5.99 -51.93 -0.31 2.11 16 45 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 46 H 0.05 1.25 7.51 -51.93 -0.39 0.86 16 47 H 0.05 1.14 7.34 -51.93 -0.38 0.76 16 LS Contribution 388.29 15.07 5.85 5.85 Total: -1.00 -31.11 388.29 -8.80 -39.92 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -6.91 Total: 10.24 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -2.19 Total: -1.63 kcal Atomic # 7 Polarization: -49.53 SS G_CDS: 0.04 Total: -49.49 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -0.57 Total: -21.30 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.11 -8.80 -39.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516876371.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.550 kcal (2) G-P(sol) polarization free energy of solvation -31.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds