Wall clock time and date at job start Tue Mar 31 2020 17:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45198 * 109.47511 * 2 1 4 4 C 1.34748 * 117.00031 * 180.02562 * 3 2 1 5 5 O 1.21517 * 120.00374 * 0.02562 * 4 3 2 6 6 C 1.47382 * 120.00270 * 180.02562 * 4 3 2 7 7 C 1.39752 * 120.20154 * 2.62854 * 6 4 3 8 8 C 1.37777 * 119.91480 * 180.27426 * 7 6 4 9 9 C 1.38579 * 120.33640 * 359.72817 * 8 7 6 10 10 C 1.38018 * 120.41959 * 359.97438 * 9 8 7 11 11 C 1.38845 * 120.07514 * 0.02562 * 10 9 8 12 12 N 1.39255 * 120.17040 * 179.97438 * 11 10 9 13 13 C 1.34774 * 120.00027 * 323.20099 * 12 11 10 14 14 O 1.21277 * 119.99853 * 5.14345 * 13 12 11 15 15 C 1.50696 * 120.00097 * 185.14978 * 13 12 11 16 16 N 1.46897 * 109.47109 * 179.97438 * 15 13 12 17 17 C 1.46903 * 111.00049 * 183.02755 * 16 15 13 18 18 H 1.09009 * 109.47040 * 35.14263 * 17 16 15 19 19 C 1.50704 * 109.47253 * 155.14070 * 17 16 15 20 20 H 1.07998 * 119.99845 * 0.02562 * 19 17 16 21 21 C 1.37875 * 119.99922 * 180.02562 * 19 17 16 22 22 N 1.31512 * 120.00146 * 0.02562 * 21 19 17 23 23 Si 1.86804 * 119.99870 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.46708 * 59.99922 * 23 21 19 25 25 H 1.48497 * 109.46962 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47085 * 300.00113 * 23 21 19 27 27 C 1.53002 * 109.47267 * 275.14506 * 17 16 15 28 28 C 1.53000 * 109.47049 * 303.59303 * 27 17 16 29 29 H 1.09000 * 109.46996 * 59.99683 * 1 2 3 30 30 H 1.08997 * 109.47335 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46839 * 299.99985 * 1 2 3 32 32 H 1.09000 * 109.46933 * 239.99578 * 2 1 3 33 33 H 1.09000 * 109.46996 * 120.00317 * 2 1 3 34 34 H 1.08003 * 120.04128 * 359.97438 * 7 6 4 35 35 H 1.08000 * 119.82804 * 179.74337 * 8 7 6 36 36 H 1.08004 * 119.78808 * 180.02562 * 9 8 7 37 37 H 1.08002 * 119.96181 * 180.02562 * 10 9 8 38 38 H 0.97003 * 119.99556 * 143.19540 * 12 11 10 39 39 H 1.08999 * 109.47389 * 59.99505 * 15 13 12 40 40 H 1.08995 * 109.47270 * 299.99972 * 15 13 12 41 41 H 1.00897 * 111.00454 * 306.98526 * 16 15 13 42 42 H 0.97005 * 119.99867 * 179.97438 * 22 21 19 43 43 H 1.08991 * 109.47296 * 63.59762 * 27 17 16 44 44 H 1.09007 * 109.46847 * 183.59833 * 27 17 16 45 45 H 1.08998 * 109.47065 * 174.75881 * 28 27 17 46 46 H 1.08997 * 109.47025 * 294.76010 * 28 27 17 47 47 H 1.09007 * 109.46647 * 54.75716 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3499 1.5454 -0.0005 5 8 4.0902 0.5817 -0.0015 6 6 3.9134 2.9072 0.0000 7 6 3.0673 4.0181 0.0565 8 6 3.6002 5.2886 0.0509 9 6 4.9727 5.4718 -0.0047 10 6 5.8213 4.3845 -0.0547 11 6 5.3029 3.0964 -0.0500 12 7 6.1573 1.9980 -0.1009 13 6 7.2782 2.0501 -0.8475 14 8 7.5913 3.0834 -1.3999 15 6 8.1423 0.8245 -0.9960 16 7 9.2942 1.1383 -1.8518 17 6 10.1223 -0.0539 -2.0780 18 1 9.4826 -0.9345 -2.1387 19 6 10.8858 0.1021 -3.3679 20 1 10.7681 0.9975 -3.9602 21 6 11.7347 -0.8982 -3.7918 22 7 11.8777 -1.9888 -3.0708 23 14 12.6806 -0.7051 -5.3911 24 1 13.5523 0.4943 -5.3087 25 1 13.5177 -1.9102 -5.6196 26 1 11.7241 -0.5457 -6.5157 27 6 11.1074 -0.2181 -0.9188 28 6 11.9448 1.0545 -0.7771 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.9969 3.8808 0.0995 35 1 2.9448 6.1462 0.0904 36 1 5.3809 6.4717 -0.0082 37 1 6.8898 4.5358 -0.0975 38 1 5.9458 1.1954 0.4011 39 1 7.5604 0.0225 -1.4501 40 1 8.4943 0.5069 -0.0145 41 1 8.9953 1.5422 -2.7268 42 1 12.4747 -2.6927 -3.3693 43 1 10.5558 -0.3948 0.0044 44 1 11.7642 -1.0650 -1.1175 45 1 12.5807 0.9746 0.1045 46 1 12.5666 1.1808 -1.6634 47 1 11.2836 1.9146 -0.6716 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000516876371.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:57 Heat of formation + Delta-G solvation = -108.873843 kcal Electronic energy + Delta-G solvation = -28530.426636 eV Core-core repulsion = 24484.677689 eV Total energy + Delta-G solvation = -4045.748947 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.16488 -41.08179 -39.48431 -37.91262 -37.75427 -35.78816 -34.51922 -33.11253 -32.66015 -31.93489 -30.99467 -28.98344 -26.81226 -25.67681 -25.02975 -24.14691 -23.44789 -22.16335 -21.54602 -20.89757 -19.17422 -18.93934 -18.51896 -17.83756 -17.79855 -17.61102 -17.05318 -16.65894 -16.09106 -15.89484 -15.57773 -15.25137 -15.19499 -15.05446 -14.94859 -14.59423 -14.36046 -14.02677 -13.76258 -13.63610 -13.55237 -13.18471 -13.09552 -12.94326 -12.82805 -12.70872 -12.62204 -12.49810 -12.42524 -12.01223 -11.79573 -11.76243 -11.56971 -11.36597 -11.30639 -10.91496 -10.79884 -10.53594 -10.10315 -9.32167 -9.09903 -8.11667 -6.23909 -0.44064 0.26334 1.41415 1.41684 1.43199 1.45750 1.50575 1.53472 1.89821 2.42259 2.74304 3.16791 3.53928 3.58615 3.69158 3.80336 3.99967 4.06056 4.07478 4.31251 4.33831 4.34342 4.37252 4.37538 4.42697 4.62061 4.79415 4.80009 4.91116 4.92754 4.93086 5.09195 5.12015 5.24369 5.27799 5.32908 5.34070 5.41319 5.46873 5.52382 5.68651 5.78139 5.85254 5.88596 6.25187 6.27596 6.40652 6.56971 6.69519 6.92857 7.01578 7.44493 8.93144 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013823 B = 0.002593 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.069165 B =10794.989734 C =11924.929308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.053 3.947 3 O -0.348 6.348 4 C 0.514 3.486 5 O -0.537 6.537 6 C -0.181 4.181 7 C -0.037 4.037 8 C -0.141 4.141 9 C -0.056 4.056 10 C -0.156 4.156 11 C 0.194 3.806 12 N -0.663 5.663 13 C 0.521 3.479 14 O -0.534 6.534 15 C 0.047 3.953 16 N -0.667 5.667 17 C 0.223 3.777 18 H -0.026 1.026 19 C -0.528 4.528 20 H 0.053 0.947 21 C 0.019 3.981 22 N -0.914 5.914 23 Si 0.955 3.045 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.274 1.274 27 C -0.101 4.101 28 C -0.110 4.110 29 H 0.069 0.931 30 H 0.098 0.902 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.164 0.836 35 H 0.171 0.829 36 H 0.159 0.841 37 H 0.128 0.872 38 H 0.425 0.575 39 H 0.057 0.943 40 H 0.109 0.891 41 H 0.335 0.665 42 H 0.262 0.738 43 H 0.026 0.974 44 H 0.064 0.936 45 H 0.037 0.963 46 H 0.029 0.971 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.743 10.564 10.453 28.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.020 4.020 3 O -0.264 6.264 4 C 0.362 3.638 5 O -0.429 6.429 6 C -0.184 4.184 7 C -0.056 4.056 8 C -0.159 4.159 9 C -0.074 4.074 10 C -0.177 4.177 11 C 0.097 3.903 12 N -0.313 5.313 13 C 0.310 3.690 14 O -0.409 6.409 15 C -0.085 4.085 16 N -0.299 5.299 17 C 0.115 3.885 18 H -0.009 1.009 19 C -0.567 4.567 20 H 0.071 0.929 21 C -0.180 4.180 22 N -0.553 5.553 23 Si 0.781 3.219 24 H -0.198 1.198 25 H -0.208 1.208 26 H -0.199 1.199 27 C -0.140 4.140 28 C -0.167 4.167 29 H 0.088 0.912 30 H 0.116 0.884 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.182 0.818 35 H 0.189 0.811 36 H 0.177 0.823 37 H 0.146 0.854 38 H 0.267 0.733 39 H 0.075 0.925 40 H 0.127 0.873 41 H 0.152 0.848 42 H 0.072 0.928 43 H 0.044 0.956 44 H 0.082 0.918 45 H 0.056 0.944 46 H 0.048 0.952 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -23.811 10.934 10.559 28.249 hybrid contribution 0.328 -1.607 -1.281 2.082 sum -23.483 9.327 9.277 26.917 Atomic orbital electron populations 1.21822 0.89984 1.04420 1.03955 1.23340 0.97268 0.78776 1.02615 1.86525 1.22288 1.33890 1.83746 1.21191 0.81208 0.89486 0.71933 1.90708 1.60628 1.43477 1.48122 1.19042 0.91580 0.91529 1.16281 1.21615 1.00663 0.90697 0.92579 1.21550 0.95160 0.97834 1.01356 1.21717 0.93756 0.99290 0.92656 1.21348 1.01700 0.90909 1.03705 1.17997 0.87988 0.88297 0.96032 1.43750 1.21930 1.17664 1.47910 1.21037 0.80380 0.90465 0.77112 1.90654 1.70813 1.32390 1.47063 1.21815 0.92067 0.93127 1.01532 1.60448 1.18310 1.30855 1.20319 1.18994 0.90325 0.85066 0.94138 1.00895 1.21384 1.26023 1.03167 1.06076 0.92883 1.25587 0.97470 0.94839 1.00107 1.69987 1.38351 1.07724 1.39246 0.85662 0.78683 0.77486 0.80112 1.19821 1.20786 1.19910 1.21362 0.98608 0.98649 0.95381 1.21319 0.98579 0.98218 0.98591 0.91211 0.88365 0.90717 0.91814 0.90965 0.81801 0.81114 0.82327 0.85427 0.73296 0.92495 0.87310 0.84764 0.92838 0.95574 0.91794 0.94357 0.95150 0.92943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 10.29 71.98 0.74 -0.53 16 2 C 0.05 0.83 6.20 71.98 0.45 1.27 16 3 O -0.35 -6.73 9.47 -56.58 -0.54 -7.27 16 4 C 0.51 12.50 7.89 70.23 0.55 13.05 16 5 O -0.54 -15.59 13.72 19.78 0.27 -15.32 16 6 C -0.18 -4.14 5.89 -20.00 -0.12 -4.26 16 7 C -0.04 -0.58 9.61 22.53 0.22 -0.36 16 8 C -0.14 -1.79 10.02 22.24 0.22 -1.57 16 9 C -0.06 -0.94 10.03 22.30 0.22 -0.71 16 10 C -0.16 -3.96 8.67 22.36 0.19 -3.77 16 11 C 0.19 5.28 6.28 38.62 0.24 5.52 16 12 N -0.66 -19.82 4.59 -302.94 -1.39 -21.21 16 13 C 0.52 18.45 7.70 87.66 0.67 19.13 16 14 O -0.53 -21.55 13.66 -3.02 -0.04 -21.59 16 15 C 0.05 1.76 6.00 85.56 0.51 2.27 16 16 N -0.67 -29.97 4.97 -499.45 -2.48 -32.45 16 17 C 0.22 11.43 2.30 44.17 0.10 11.53 16 18 H -0.03 -1.48 7.75 -2.38 -0.02 -1.50 16 19 C -0.53 -29.39 7.60 25.60 0.19 -29.20 16 20 H 0.05 2.97 7.62 -2.91 -0.02 2.94 16 21 C 0.02 1.08 5.30 84.65 0.45 1.53 16 22 N -0.91 -52.60 11.30 21.45 0.24 -52.36 16 23 Si 0.95 44.32 29.54 68.60 2.03 46.35 16 24 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 25 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 26 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 27 C -0.10 -4.98 5.59 30.59 0.17 -4.81 16 28 C -0.11 -4.98 9.51 71.98 0.68 -4.30 16 29 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.10 0.54 8.14 -2.39 -0.02 0.53 16 31 H 0.07 0.56 8.14 -2.38 -0.02 0.55 16 32 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.16 1.69 7.61 -2.91 -0.02 1.67 16 35 H 0.17 0.87 8.06 -2.91 -0.02 0.84 16 36 H 0.16 1.78 8.06 -2.91 -0.02 1.75 16 37 H 0.13 3.80 6.33 -2.91 -0.02 3.79 16 38 H 0.42 11.92 6.49 -92.71 -0.60 11.32 16 39 H 0.06 2.12 7.98 -2.39 -0.02 2.10 16 40 H 0.11 3.75 7.57 -2.39 -0.02 3.74 16 41 H 0.33 15.69 7.81 -89.70 -0.70 14.99 16 42 H 0.26 14.41 8.31 -92.70 -0.77 13.64 16 43 H 0.03 1.16 7.60 -2.39 -0.02 1.14 16 44 H 0.06 3.50 5.99 -2.38 -0.01 3.49 16 45 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.03 1.47 7.51 -2.39 -0.02 1.45 16 47 H 0.05 2.34 7.34 -2.38 -0.02 2.32 16 Total: -1.00 -68.93 388.29 3.30 -65.62 By element: Atomic # 1 Polarization: 33.73 SS G_CDS: -0.30 Total: 33.42 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: 5.51 Total: 4.80 kcal Atomic # 7 Polarization: -102.39 SS G_CDS: -3.63 Total: -106.02 kcal Atomic # 8 Polarization: -43.87 SS G_CDS: -0.31 Total: -44.18 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -68.93 3.30 -65.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516876371.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.250 kcal (2) G-P(sol) polarization free energy of solvation -68.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds