Wall clock time and date at job start Tue Mar 31 2020 17:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45199 * 109.47107 * 2 1 4 4 C 1.34758 * 116.99852 * 179.97438 * 3 2 1 5 5 O 1.21512 * 120.00284 * 0.02562 * 4 3 2 6 6 C 1.47390 * 119.99891 * 180.02562 * 4 3 2 7 7 C 1.39748 * 120.20216 * 355.09966 * 6 4 3 8 8 C 1.37779 * 119.91051 * 179.97438 * 7 6 4 9 9 C 1.38582 * 120.33962 * 0.02562 * 8 7 6 10 10 C 1.38011 * 120.41706 * 0.02562 * 9 8 7 11 11 C 1.38851 * 120.07718 * 359.97438 * 10 9 8 12 12 N 1.39251 * 120.16894 * 180.02562 * 11 10 9 13 13 C 1.34778 * 119.99999 * 34.84641 * 12 11 10 14 14 O 1.21281 * 120.00217 * 5.65707 * 13 12 11 15 15 C 1.50706 * 120.00080 * 185.66391 * 13 12 11 16 16 N 1.46902 * 109.46974 * 179.97438 * 15 13 12 17 17 C 1.46896 * 110.99831 * 175.11013 * 16 15 13 18 18 H 1.08993 * 109.47578 * 39.66702 * 17 16 15 19 19 C 1.50709 * 109.47010 * 279.66528 * 17 16 15 20 20 H 1.07998 * 119.99697 * 359.97438 * 19 17 16 21 21 C 1.37870 * 119.99781 * 180.02562 * 19 17 16 22 22 N 1.31513 * 120.00557 * 359.97438 * 21 19 17 23 23 Si 1.86803 * 119.99689 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46939 * 59.99979 * 23 21 19 25 25 H 1.48506 * 109.46825 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.47055 * 299.99616 * 23 21 19 27 27 C 1.53007 * 109.47236 * 159.66765 * 17 16 15 28 28 C 1.53000 * 109.46927 * 298.58180 * 27 17 16 29 29 H 1.09007 * 109.47122 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47486 * 300.00430 * 1 2 3 31 31 H 1.09006 * 109.46935 * 60.00345 * 1 2 3 32 32 H 1.09004 * 109.47604 * 239.99936 * 2 1 3 33 33 H 1.08999 * 109.47311 * 119.99764 * 2 1 3 34 34 H 1.07995 * 120.04518 * 359.97438 * 7 6 4 35 35 H 1.08005 * 119.82912 * 180.02562 * 8 7 6 36 36 H 1.07994 * 119.78707 * 180.02562 * 9 8 7 37 37 H 1.08006 * 119.96073 * 179.72273 * 10 9 8 38 38 H 0.97000 * 120.00754 * 214.83894 * 12 11 10 39 39 H 1.08996 * 109.46615 * 299.99370 * 15 13 12 40 40 H 1.08997 * 109.46962 * 59.99751 * 15 13 12 41 41 H 1.00902 * 111.00352 * 51.15259 * 16 15 13 42 42 H 0.96996 * 120.00598 * 180.02562 * 22 21 19 43 43 H 1.09003 * 109.47094 * 58.58355 * 27 17 16 44 44 H 1.08996 * 109.46978 * 178.57934 * 27 17 16 45 45 H 1.08995 * 109.46710 * 185.00976 * 28 27 17 46 46 H 1.08993 * 109.47092 * 305.01492 * 28 27 17 47 47 H 1.09005 * 109.46764 * 65.01560 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3499 1.5455 0.0005 5 8 4.0901 0.5819 0.0005 6 6 3.9133 2.9075 0.0011 7 6 3.0700 4.0171 -0.1020 8 6 3.6030 5.2876 -0.1003 9 6 4.9727 5.4720 0.0027 10 6 5.8182 4.3859 0.1042 11 6 5.2997 3.0979 0.1042 12 7 6.1510 2.0007 0.2071 13 6 7.2644 2.0802 0.9625 14 8 7.4727 3.0687 1.6335 15 6 8.2506 0.9407 0.9731 16 7 9.3692 1.2697 1.8668 17 6 10.2934 0.1349 1.9930 18 1 10.4116 -0.3471 1.0226 19 6 9.7386 -0.8573 2.9825 20 1 8.7941 -0.6638 3.4692 21 6 10.4372 -2.0112 3.2671 22 7 11.5876 -2.2465 2.6748 23 14 9.7491 -3.2413 4.4930 24 1 8.4295 -3.7289 4.0173 25 1 10.6835 -4.3885 4.6206 26 1 9.5871 -2.5848 5.8150 27 6 11.6535 0.6368 2.4822 28 6 12.2329 1.6172 1.4604 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.0020 3.8789 -0.1829 35 1 2.9501 6.1442 -0.1797 36 1 5.3808 6.4718 0.0036 37 1 6.8849 4.5380 0.1796 38 1 5.9428 1.1792 -0.2648 39 1 7.7565 0.0359 1.3269 40 1 8.6283 0.7776 -0.0362 41 1 9.0344 1.5657 2.7715 42 1 12.0790 -3.0586 2.8747 43 1 11.5314 1.1409 3.4409 44 1 12.3317 -0.2084 2.5999 45 1 13.2390 1.9062 1.7643 46 1 12.2719 1.1405 0.4811 47 1 11.6005 2.5035 1.4083 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000516876372.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:00 Heat of formation + Delta-G solvation = -113.995422 kcal Electronic energy + Delta-G solvation = -28582.509062 eV Core-core repulsion = 24536.538027 eV Total energy + Delta-G solvation = -4045.971036 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.17178 -41.08094 -39.48046 -37.85484 -37.75576 -35.78490 -34.41675 -33.12542 -33.01247 -31.94641 -30.98611 -28.96197 -26.93406 -25.70307 -24.58530 -24.04756 -23.34509 -22.17924 -21.57079 -21.28394 -19.16795 -18.89550 -18.62835 -18.04944 -17.82922 -17.65683 -16.75048 -16.71197 -16.27831 -15.79943 -15.60383 -15.37584 -15.20276 -15.08875 -14.84133 -14.41223 -14.24969 -13.94404 -13.73903 -13.63852 -13.45758 -13.14755 -13.11453 -13.08799 -12.96012 -12.82325 -12.60577 -12.51821 -12.49279 -12.11809 -11.79466 -11.61019 -11.58503 -11.55075 -11.37201 -11.10272 -10.86022 -10.48888 -10.11133 -9.30338 -9.16043 -8.08808 -6.31069 -0.43864 0.25508 1.37037 1.37979 1.40085 1.45523 1.48119 1.53281 1.90083 2.37976 2.75184 3.11320 3.52973 3.59940 3.73883 3.79359 3.98456 4.04908 4.07421 4.30402 4.34169 4.36866 4.38108 4.39682 4.57221 4.61436 4.75410 4.78703 4.90448 4.91626 4.92551 5.07807 5.10710 5.13854 5.24356 5.32035 5.41240 5.42269 5.46240 5.46450 5.58573 5.73500 5.87753 6.04023 6.11637 6.21555 6.33593 6.55567 6.66940 6.90361 7.00569 7.40137 8.87918 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.010883 B = 0.003092 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2572.217767 B = 9054.179158 C =11225.949777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.053 3.947 3 O -0.347 6.347 4 C 0.514 3.486 5 O -0.539 6.539 6 C -0.184 4.184 7 C -0.036 4.036 8 C -0.142 4.142 9 C -0.053 4.053 10 C -0.157 4.157 11 C 0.197 3.803 12 N -0.666 5.666 13 C 0.521 3.479 14 O -0.535 6.535 15 C 0.052 3.948 16 N -0.666 5.666 17 C 0.223 3.777 18 H 0.012 0.988 19 C -0.567 4.567 20 H 0.045 0.955 21 C 0.026 3.974 22 N -0.906 5.906 23 Si 0.948 3.052 24 H -0.276 1.276 25 H -0.279 1.279 26 H -0.275 1.275 27 C -0.102 4.102 28 C -0.124 4.124 29 H 0.098 0.902 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.164 0.836 35 H 0.172 0.828 36 H 0.161 0.839 37 H 0.125 0.875 38 H 0.424 0.576 39 H 0.056 0.944 40 H 0.108 0.892 41 H 0.332 0.668 42 H 0.264 0.736 43 H 0.024 0.976 44 H 0.066 0.934 45 H 0.045 0.955 46 H 0.036 0.964 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.660 12.050 -9.569 27.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.021 4.021 3 O -0.264 6.264 4 C 0.362 3.638 5 O -0.431 6.431 6 C -0.188 4.188 7 C -0.054 4.054 8 C -0.160 4.160 9 C -0.071 4.071 10 C -0.177 4.177 11 C 0.100 3.900 12 N -0.316 5.316 13 C 0.310 3.690 14 O -0.410 6.410 15 C -0.080 4.080 16 N -0.297 5.297 17 C 0.114 3.886 18 H 0.030 0.970 19 C -0.606 4.606 20 H 0.063 0.937 21 C -0.175 4.175 22 N -0.545 5.545 23 Si 0.774 3.226 24 H -0.201 1.201 25 H -0.205 1.205 26 H -0.201 1.201 27 C -0.140 4.140 28 C -0.182 4.182 29 H 0.116 0.884 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.182 0.818 35 H 0.190 0.810 36 H 0.179 0.821 37 H 0.143 0.857 38 H 0.268 0.732 39 H 0.074 0.926 40 H 0.126 0.874 41 H 0.149 0.851 42 H 0.073 0.927 43 H 0.043 0.957 44 H 0.084 0.916 45 H 0.064 0.936 46 H 0.055 0.945 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -21.742 12.518 -9.615 26.868 hybrid contribution -0.370 -2.446 1.135 2.722 sum -22.113 10.072 -8.480 25.736 Atomic orbital electron populations 1.21819 0.89867 1.04425 1.04001 1.23344 0.97348 0.78804 1.02562 1.86526 1.22238 1.33842 1.83753 1.21238 0.81217 0.89528 0.71850 1.90693 1.60598 1.43571 1.48278 1.19014 0.91580 0.91491 1.16673 1.21610 1.00576 0.90696 0.92527 1.21548 0.95208 0.97765 1.01516 1.21699 0.93731 0.99241 0.92428 1.21217 1.01507 0.90892 1.04116 1.18015 0.88034 0.88441 0.95479 1.43894 1.22379 1.16493 1.48825 1.21108 0.81305 0.88845 0.77713 1.90650 1.75491 1.33461 1.41428 1.21681 0.91630 0.93856 1.00881 1.60739 1.15399 1.37256 1.16259 1.18997 0.89649 0.85544 0.94376 0.96967 1.22091 1.06173 1.06015 1.26337 0.93666 1.25597 0.95064 0.99386 0.97448 1.69972 1.14535 1.26595 1.43368 0.85775 0.78277 0.78801 0.79753 1.20096 1.20456 1.20051 1.21359 0.98188 0.97943 0.96549 1.21550 0.99115 0.99170 0.98334 0.88381 0.91190 0.90617 0.90977 0.91965 0.81816 0.81019 0.82138 0.85706 0.73232 0.92579 0.87444 0.85134 0.92660 0.95672 0.91563 0.93600 0.94490 0.92820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 10.29 71.98 0.74 -0.67 16 2 C 0.05 0.89 6.20 71.98 0.45 1.34 16 3 O -0.35 -7.16 9.48 -56.68 -0.54 -7.69 16 4 C 0.51 13.25 7.88 70.23 0.55 13.81 16 5 O -0.54 -16.70 13.68 19.80 0.27 -16.43 16 6 C -0.18 -4.41 5.89 -20.00 -0.12 -4.53 16 7 C -0.04 -0.58 9.61 22.53 0.22 -0.36 16 8 C -0.14 -1.85 10.02 22.24 0.22 -1.63 16 9 C -0.05 -0.89 10.03 22.30 0.22 -0.67 16 10 C -0.16 -4.03 8.63 22.36 0.19 -3.83 16 11 C 0.20 5.58 6.25 38.62 0.24 5.82 16 12 N -0.67 -21.01 4.69 -302.92 -1.42 -22.43 16 13 C 0.52 19.15 7.57 87.66 0.66 19.82 16 14 O -0.53 -21.96 13.90 -3.03 -0.04 -22.00 16 15 C 0.05 2.05 5.99 85.56 0.51 2.56 16 16 N -0.67 -29.88 5.34 -499.45 -2.67 -32.55 16 17 C 0.22 11.33 2.00 44.18 0.09 11.42 16 18 H 0.01 0.68 7.93 -2.39 -0.02 0.66 16 19 C -0.57 -31.33 8.10 25.60 0.21 -31.12 16 20 H 0.05 2.51 7.80 -2.91 -0.02 2.49 16 21 C 0.03 1.43 5.30 84.65 0.45 1.88 16 22 N -0.91 -51.68 11.31 21.44 0.24 -51.44 16 23 Si 0.95 43.98 29.54 68.60 2.03 46.00 16 24 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 25 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 26 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 27 C -0.10 -5.02 5.43 30.60 0.17 -4.85 16 28 C -0.12 -5.17 9.70 71.98 0.70 -4.47 16 29 H 0.10 0.64 8.14 -2.38 -0.02 0.62 16 30 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 32 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 33 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.16 1.80 7.62 -2.91 -0.02 1.78 16 35 H 0.17 0.90 8.06 -2.91 -0.02 0.88 16 36 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 37 H 0.13 3.69 6.55 -2.91 -0.02 3.68 16 38 H 0.42 12.91 6.31 -92.71 -0.59 12.33 16 39 H 0.06 2.34 7.73 -2.39 -0.02 2.32 16 40 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 41 H 0.33 15.60 8.04 -89.69 -0.72 14.88 16 42 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 43 H 0.02 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.07 3.61 6.03 -2.39 -0.01 3.60 16 45 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 46 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 47 H 0.05 2.17 7.80 -2.38 -0.02 2.15 16 Total: -1.00 -68.23 391.64 3.07 -65.16 By element: Atomic # 1 Polarization: 37.19 SS G_CDS: -0.31 Total: 36.88 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: 5.50 Total: 4.50 kcal Atomic # 7 Polarization: -102.58 SS G_CDS: -3.84 Total: -106.42 kcal Atomic # 8 Polarization: -45.82 SS G_CDS: -0.31 Total: -46.13 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Total: -68.23 3.07 -65.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516876372.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.831 kcal (2) G-P(sol) polarization free energy of solvation -68.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds