Wall clock time and date at job start Tue Mar 31 2020 18:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47066 * 2 1 4 4 N 1.46500 * 109.46767 * 120.00072 * 2 1 3 5 5 C 1.46503 * 119.99467 * 139.19044 * 4 2 1 6 6 C 1.50698 * 109.47493 * 89.99915 * 5 4 2 7 7 H 1.07998 * 119.99636 * 359.97438 * 6 5 4 8 8 C 1.37872 * 120.00000 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00142 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99988 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.46740 * 90.00095 * 10 8 6 12 12 H 1.48496 * 109.47436 * 209.99814 * 10 8 6 13 13 H 1.48496 * 109.47468 * 330.00371 * 10 8 6 14 14 C 1.34768 * 120.00036 * 319.18068 * 4 2 1 15 15 O 1.21521 * 119.99511 * 145.36790 * 14 4 2 16 16 C 1.48162 * 120.00786 * 325.36740 * 14 4 2 17 17 C 1.39975 * 120.88497 * 28.72593 * 16 14 4 18 18 C 1.37977 * 119.13008 * 180.02562 * 17 16 14 19 19 N 1.31911 * 120.97755 * 0.02562 * 18 17 16 20 20 C 1.32169 * 121.97311 * 359.97438 * 19 18 17 21 21 O 1.35690 * 119.62441 * 179.97438 * 20 19 18 22 22 C 1.42894 * 116.99618 * 359.97438 * 21 20 19 23 23 H 1.08997 * 110.75798 * 32.01752 * 22 21 20 24 24 C 1.55309 * 110.84622 * 155.71536 * 22 21 20 25 25 C 1.54946 * 100.94305 * 152.31786 * 24 22 21 26 26 O 1.43643 * 105.13586 * 323.55795 * 25 24 22 27 27 C 1.43239 * 109.97363 * 24.42558 * 26 25 24 28 28 C 1.38899 * 120.75345 * 359.71455 * 20 19 18 29 29 H 1.09006 * 109.47115 * 47.95579 * 1 2 3 30 30 H 1.08995 * 109.47555 * 167.95458 * 1 2 3 31 31 H 1.09009 * 109.47271 * 287.96108 * 1 2 3 32 32 H 1.08997 * 109.46628 * 240.00068 * 2 1 3 33 33 H 1.09003 * 109.47552 * 93.11537 * 3 2 1 34 34 H 1.09004 * 109.47145 * 213.10944 * 3 2 1 35 35 H 1.09001 * 109.47716 * 333.11144 * 3 2 1 36 36 H 1.09007 * 109.46509 * 209.99584 * 5 4 2 37 37 H 1.09000 * 109.47337 * 329.98930 * 5 4 2 38 38 H 0.96996 * 119.99843 * 180.02562 * 9 8 6 39 39 H 1.07995 * 120.42977 * 359.97438 * 17 16 14 40 40 H 1.07999 * 119.51077 * 179.97438 * 18 17 16 41 41 H 1.08989 * 111.12623 * 270.23836 * 24 22 21 42 42 H 1.09000 * 111.12327 * 34.40470 * 24 22 21 43 43 H 1.08995 * 110.31214 * 204.64136 * 25 24 22 44 44 H 1.09010 * 110.30840 * 82.47018 * 25 24 22 45 45 H 1.08996 * 109.82902 * 238.77341 * 27 26 25 46 46 H 1.08999 * 109.90665 * 117.84773 * 27 26 25 47 47 H 1.07997 * 120.52942 * 180.31867 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 3.1678 -1.5940 1.1024 6 6 4.4375 -0.8178 1.3399 7 1 4.3926 0.2425 1.5402 8 6 5.6562 -1.4612 1.3014 9 7 5.7108 -2.7523 1.0570 10 14 7.2301 -0.4989 1.5951 11 1 7.5517 -0.5067 3.0449 12 1 8.3427 -1.1266 0.8380 13 1 7.0471 0.9014 1.1362 14 6 1.4101 -0.4948 2.3828 15 8 1.3262 -1.4077 3.1804 16 6 0.8437 0.8334 2.7149 17 6 0.3810 1.6892 1.7085 18 6 -0.1390 2.9184 2.0586 19 7 -0.2040 3.2932 3.3217 20 6 0.2208 2.5183 4.3045 21 8 0.1318 2.9521 5.5871 22 6 -0.4286 4.2500 5.7954 23 1 -1.1815 4.4717 5.0390 24 6 -1.0224 4.3726 7.2252 25 6 -0.8804 5.8955 7.4731 26 8 0.3567 6.2643 6.8430 27 6 0.6748 5.3296 5.8052 28 6 0.7525 1.2627 4.0398 29 1 -0.3634 0.6883 -0.7632 30 1 -0.3634 -1.0050 -0.2144 31 1 -0.3634 0.3169 0.9776 32 1 1.8932 -0.5138 -0.8900 33 1 2.2138 1.7665 1.0261 34 1 2.9727 1.4981 -0.5614 35 1 1.2970 2.0906 -0.4648 36 1 3.0756 -2.3784 1.8537 37 1 3.1968 -2.0433 0.1097 38 1 6.5682 -3.2050 1.0303 39 1 0.4312 1.3916 0.6716 40 1 -0.4975 3.5837 1.2871 41 1 -2.0686 4.0675 7.2436 42 1 -0.4357 3.8012 7.9445 43 1 -0.8367 6.1023 8.5424 44 1 -1.7122 6.4323 7.0168 45 1 1.6417 4.8685 6.0066 46 1 0.7020 5.8394 4.8422 47 1 1.0938 0.6304 4.8460 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541693740.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:03 Heat of formation + Delta-G solvation = 8.998739 kcal Electronic energy + Delta-G solvation = -29654.881093 eV Core-core repulsion = 25614.243485 eV Total energy + Delta-G solvation = -4040.637608 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.43919 -40.21200 -38.96549 -37.44087 -36.63559 -33.67759 -32.30110 -32.09580 -31.51828 -29.89195 -28.95028 -27.59548 -26.96964 -24.86431 -23.76710 -22.91131 -22.60767 -21.93859 -21.43830 -19.38772 -17.80510 -17.21774 -17.12349 -16.65867 -16.48885 -16.04649 -15.62461 -15.39334 -15.26880 -14.81613 -14.61612 -14.39249 -14.08114 -13.78609 -13.65811 -13.47446 -13.38772 -13.17561 -12.73923 -12.54907 -12.32388 -12.17375 -11.96159 -11.86809 -11.37283 -11.32495 -11.20103 -11.12465 -10.92146 -10.86827 -10.66157 -10.31671 -10.18981 -9.84813 -9.72583 -9.65166 -9.54605 -9.23320 -8.52144 -8.34483 -7.71350 -6.12792 -4.19534 0.90044 1.17292 2.67324 3.11235 3.25575 3.32352 3.34437 3.56491 3.70072 3.88188 4.08233 4.20962 4.36151 4.52859 4.65570 4.69645 4.72915 4.76419 4.92254 4.97552 5.07921 5.13856 5.21229 5.28811 5.31166 5.37158 5.43979 5.55280 5.56368 5.61089 5.70018 5.73398 5.76861 5.82104 5.94941 6.11009 6.16374 6.33920 6.40235 6.56453 6.61472 6.98791 7.15560 7.31793 7.48215 7.77612 7.84172 8.12144 8.23621 8.61360 8.88226 9.46656 10.94542 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012926 B = 0.003241 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.603671 B = 8635.939123 C = 9676.942965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.137 3.863 3 C -0.178 4.178 4 N -0.605 5.605 5 C 0.249 3.751 6 C -0.535 4.535 7 H 0.060 0.940 8 C 0.063 3.937 9 N -0.891 5.891 10 Si 0.897 3.103 11 H -0.279 1.279 12 H -0.285 1.285 13 H -0.273 1.273 14 C 0.572 3.428 15 O -0.520 6.520 16 C -0.053 4.053 17 C -0.225 4.225 18 C 0.113 3.887 19 N -0.531 5.531 20 C 0.303 3.697 21 O -0.290 6.290 22 C 0.062 3.938 23 H 0.105 0.895 24 C -0.155 4.155 25 C 0.053 3.947 26 O -0.379 6.379 27 C 0.035 3.965 28 C -0.131 4.131 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.045 0.955 37 H 0.035 0.965 38 H 0.265 0.735 39 H 0.215 0.785 40 H 0.161 0.839 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.065 0.935 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.483 14.700 2.604 21.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.270 4.270 2 C 0.032 3.968 3 C -0.236 4.236 4 N -0.338 5.338 5 C 0.130 3.870 6 C -0.574 4.574 7 H 0.078 0.922 8 C -0.139 4.139 9 N -0.530 5.530 10 Si 0.724 3.276 11 H -0.205 1.205 12 H -0.210 1.210 13 H -0.198 1.198 14 C 0.359 3.641 15 O -0.395 6.395 16 C -0.065 4.065 17 C -0.243 4.243 18 C -0.041 4.041 19 N -0.255 5.255 20 C 0.124 3.876 21 O -0.198 6.198 22 C 0.004 3.996 23 H 0.123 0.877 24 C -0.193 4.193 25 C -0.023 4.023 26 O -0.298 6.298 27 C -0.042 4.042 28 C -0.153 4.153 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.110 0.890 32 H 0.115 0.885 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.053 0.947 38 H 0.074 0.926 39 H 0.230 0.770 40 H 0.178 0.822 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.109 0.891 44 H 0.083 0.917 45 H 0.097 0.903 46 H 0.097 0.903 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -15.509 14.863 3.505 21.765 hybrid contribution 1.237 -0.262 -0.208 1.281 sum -14.272 14.601 3.297 20.682 Atomic orbital electron populations 1.23344 0.96117 1.03362 1.04202 1.21091 0.92407 0.93524 0.89787 1.22894 1.01512 0.95862 1.03302 1.47941 1.33017 1.47430 1.05420 1.19389 0.80334 0.88650 0.98589 1.21503 0.90831 0.95565 1.49511 0.92207 1.24936 0.99150 0.94910 0.94933 1.69932 1.25942 1.08432 1.48670 0.86518 0.82634 0.79987 0.78447 1.20508 1.21038 1.19824 1.17852 0.77699 0.86009 0.82531 1.90719 1.55250 1.42884 1.50664 1.20652 0.96769 0.96211 0.92820 1.24967 0.99091 0.94768 1.05497 1.22324 0.96187 0.94377 0.91229 1.66985 1.20893 1.35985 1.01618 1.19507 0.93853 0.90090 0.84168 1.86318 1.77898 1.33838 1.21711 1.23836 0.95895 0.81520 0.98333 0.87720 1.23375 1.02762 0.97440 0.95693 1.23331 0.87232 0.92900 0.98831 1.88441 1.40295 1.50549 1.50541 1.23570 0.98717 0.90185 0.91711 1.21098 1.02034 0.94761 0.97363 0.90484 0.91735 0.88972 0.88505 0.90845 0.91619 0.92108 0.93683 0.94680 0.92571 0.76957 0.82162 0.88952 0.88931 0.89052 0.91701 0.90303 0.90272 0.83320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.53 7.77 37.16 0.29 -2.24 16 2 C 0.14 2.07 3.25 -67.93 -0.22 1.85 16 3 C -0.18 -2.43 8.04 37.15 0.30 -2.13 16 4 N -0.61 -12.33 2.37 -168.46 -0.40 -12.73 16 5 C 0.25 6.25 5.39 -5.19 -0.03 6.22 16 6 C -0.54 -14.45 9.39 -34.44 -0.32 -14.77 16 7 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 8 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 9 N -0.89 -25.72 13.29 55.43 0.74 -24.98 16 10 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 13 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 14 C 0.57 11.90 6.23 -12.19 -0.08 11.82 16 15 O -0.52 -12.63 16.65 5.35 0.09 -12.54 16 16 C -0.05 -0.90 4.90 -104.67 -0.51 -1.42 16 17 C -0.22 -2.96 4.19 -39.03 -0.16 -3.13 16 18 C 0.11 1.33 11.17 -17.61 -0.20 1.13 16 19 N -0.53 -7.12 8.68 -13.38 -0.12 -7.23 16 20 C 0.30 4.51 7.48 -17.16 -0.13 4.38 16 21 O -0.29 -4.02 9.85 -18.77 -0.18 -4.20 16 22 C 0.06 0.68 3.19 -24.78 -0.08 0.60 16 23 H 0.10 1.13 7.14 -51.93 -0.37 0.76 16 24 C -0.16 -1.32 6.89 -24.48 -0.17 -1.49 16 25 C 0.05 0.43 7.78 38.18 0.30 0.73 16 26 O -0.38 -4.38 11.36 -35.23 -0.40 -4.78 16 27 C 0.04 0.40 7.58 37.88 0.29 0.69 16 28 C -0.13 -2.18 9.63 -38.84 -0.37 -2.56 16 29 H 0.08 0.64 7.70 -51.93 -0.40 0.24 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.09 1.18 3.57 -66.86 -0.24 0.94 16 32 H 0.10 1.45 7.79 -51.93 -0.40 1.05 16 33 H 0.07 1.15 5.21 -51.93 -0.27 0.88 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.06 0.58 6.80 -51.93 -0.35 0.23 16 36 H 0.05 1.28 7.39 -51.92 -0.38 0.90 16 37 H 0.04 0.89 7.84 -51.93 -0.41 0.48 16 38 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 39 H 0.21 2.47 0.80 -109.44 -0.09 2.38 16 40 H 0.16 1.28 8.06 -52.49 -0.42 0.86 16 41 H 0.09 0.62 8.14 -51.94 -0.42 0.20 16 42 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 45 H 0.08 0.98 8.05 -51.93 -0.42 0.56 16 46 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.15 2.55 7.97 -52.49 -0.42 2.13 16 LS Contribution 372.81 15.07 5.62 5.62 Total: -1.00 -32.52 372.81 -7.55 -40.07 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -6.68 Total: 3.20 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: -1.20 Total: 1.36 kcal Atomic # 7 Polarization: -45.17 SS G_CDS: 0.22 Total: -44.95 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -0.50 Total: -21.52 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.52 -7.55 -40.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541693740.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.071 kcal (2) G-P(sol) polarization free energy of solvation -32.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds