Wall clock time and date at job start Tue Mar 31 2020 18:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47066 * 2 1 4 4 N 1.46500 * 109.46767 * 120.00072 * 2 1 3 5 5 C 1.46503 * 119.99467 * 139.19044 * 4 2 1 6 6 C 1.50698 * 109.47493 * 89.99915 * 5 4 2 7 7 H 1.07998 * 119.99636 * 359.97438 * 6 5 4 8 8 C 1.37872 * 120.00000 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00142 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99988 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.46740 * 90.00095 * 10 8 6 12 12 H 1.48496 * 109.47436 * 209.99814 * 10 8 6 13 13 H 1.48496 * 109.47468 * 330.00371 * 10 8 6 14 14 C 1.34768 * 120.00036 * 319.18068 * 4 2 1 15 15 O 1.21521 * 119.99511 * 145.36790 * 14 4 2 16 16 C 1.48162 * 120.00786 * 325.36740 * 14 4 2 17 17 C 1.39975 * 120.88497 * 28.72593 * 16 14 4 18 18 C 1.37977 * 119.13008 * 180.02562 * 17 16 14 19 19 N 1.31911 * 120.97755 * 0.02562 * 18 17 16 20 20 C 1.32169 * 121.97311 * 359.97438 * 19 18 17 21 21 O 1.35690 * 119.62441 * 179.97438 * 20 19 18 22 22 C 1.42894 * 116.99618 * 359.97438 * 21 20 19 23 23 H 1.08997 * 110.75798 * 32.01752 * 22 21 20 24 24 C 1.55309 * 110.84622 * 155.71536 * 22 21 20 25 25 C 1.54946 * 100.94305 * 152.31786 * 24 22 21 26 26 O 1.43643 * 105.13586 * 323.55795 * 25 24 22 27 27 C 1.43239 * 109.97363 * 24.42558 * 26 25 24 28 28 C 1.38899 * 120.75345 * 359.71455 * 20 19 18 29 29 H 1.09006 * 109.47115 * 47.95579 * 1 2 3 30 30 H 1.08995 * 109.47555 * 167.95458 * 1 2 3 31 31 H 1.09009 * 109.47271 * 287.96108 * 1 2 3 32 32 H 1.08997 * 109.46628 * 240.00068 * 2 1 3 33 33 H 1.09003 * 109.47552 * 93.11537 * 3 2 1 34 34 H 1.09004 * 109.47145 * 213.10944 * 3 2 1 35 35 H 1.09001 * 109.47716 * 333.11144 * 3 2 1 36 36 H 1.09007 * 109.46509 * 209.99584 * 5 4 2 37 37 H 1.09000 * 109.47337 * 329.98930 * 5 4 2 38 38 H 0.96996 * 119.99843 * 180.02562 * 9 8 6 39 39 H 1.07995 * 120.42977 * 359.97438 * 17 16 14 40 40 H 1.07999 * 119.51077 * 179.97438 * 18 17 16 41 41 H 1.08989 * 111.12623 * 270.23836 * 24 22 21 42 42 H 1.09000 * 111.12327 * 34.40470 * 24 22 21 43 43 H 1.08995 * 110.31214 * 204.64136 * 25 24 22 44 44 H 1.09010 * 110.30840 * 82.47018 * 25 24 22 45 45 H 1.08996 * 109.82902 * 238.77341 * 27 26 25 46 46 H 1.08999 * 109.90665 * 117.84773 * 27 26 25 47 47 H 1.07997 * 120.52942 * 180.31867 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 3.1678 -1.5940 1.1024 6 6 4.4375 -0.8178 1.3399 7 1 4.3926 0.2425 1.5402 8 6 5.6562 -1.4612 1.3014 9 7 5.7108 -2.7523 1.0570 10 14 7.2301 -0.4989 1.5951 11 1 7.5517 -0.5067 3.0449 12 1 8.3427 -1.1266 0.8380 13 1 7.0471 0.9014 1.1362 14 6 1.4101 -0.4948 2.3828 15 8 1.3262 -1.4077 3.1804 16 6 0.8437 0.8334 2.7149 17 6 0.3810 1.6892 1.7085 18 6 -0.1390 2.9184 2.0586 19 7 -0.2040 3.2932 3.3217 20 6 0.2208 2.5183 4.3045 21 8 0.1318 2.9521 5.5871 22 6 -0.4286 4.2500 5.7954 23 1 -1.1815 4.4717 5.0390 24 6 -1.0224 4.3726 7.2252 25 6 -0.8804 5.8955 7.4731 26 8 0.3567 6.2643 6.8430 27 6 0.6748 5.3296 5.8052 28 6 0.7525 1.2627 4.0398 29 1 -0.3634 0.6883 -0.7632 30 1 -0.3634 -1.0050 -0.2144 31 1 -0.3634 0.3169 0.9776 32 1 1.8932 -0.5138 -0.8900 33 1 2.2138 1.7665 1.0261 34 1 2.9727 1.4981 -0.5614 35 1 1.2970 2.0906 -0.4648 36 1 3.0756 -2.3784 1.8537 37 1 3.1968 -2.0433 0.1097 38 1 6.5682 -3.2050 1.0303 39 1 0.4312 1.3916 0.6716 40 1 -0.4975 3.5837 1.2871 41 1 -2.0686 4.0675 7.2436 42 1 -0.4357 3.8012 7.9445 43 1 -0.8367 6.1023 8.5424 44 1 -1.7122 6.4323 7.0168 45 1 1.6417 4.8685 6.0066 46 1 0.7020 5.8394 4.8422 47 1 1.0938 0.6304 4.8460 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541693740.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:02 Heat of formation + Delta-G solvation = -14.204471 kcal Electronic energy + Delta-G solvation = -29655.887260 eV Core-core repulsion = 25614.243485 eV Total energy + Delta-G solvation = -4041.643775 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.66168 -41.26352 -40.05114 -38.68817 -37.95635 -35.51559 -33.83728 -33.30002 -32.62787 -30.91794 -29.83832 -29.37398 -28.12724 -26.35317 -24.85542 -24.45552 -23.48368 -23.27080 -22.44382 -20.56825 -19.06265 -18.68894 -18.29667 -18.14184 -17.69413 -17.16537 -16.92920 -16.73355 -16.36859 -16.17027 -16.01937 -15.72275 -15.32819 -15.03784 -14.74831 -14.54304 -14.40099 -14.23603 -14.14873 -13.75520 -13.67932 -13.45162 -13.26886 -13.11767 -12.76194 -12.62228 -12.57165 -12.46024 -12.30134 -12.03952 -11.96832 -11.77384 -11.69903 -11.49366 -11.01071 -10.84574 -10.67605 -10.63475 -10.46905 -9.42685 -9.39594 -8.24945 -6.40931 -0.34671 0.08957 1.35576 1.37356 1.45561 1.50675 1.78597 2.20109 2.37833 2.69823 2.84559 3.04474 3.18035 3.34689 3.40011 3.69317 3.72571 3.86289 3.89091 3.91019 3.97848 4.11653 4.19302 4.24340 4.37691 4.55547 4.61767 4.63154 4.65925 4.67197 4.76753 4.82322 4.85014 4.86036 4.96140 4.96519 5.01089 5.16073 5.17087 5.28283 5.35224 5.49149 5.57393 5.85464 5.85634 6.01671 6.12969 6.60813 6.68871 6.70534 7.02899 7.31232 8.81640 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012926 B = 0.003241 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.603671 B = 8635.939123 C = 9676.942965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.122 3.878 3 C -0.175 4.175 4 N -0.610 5.610 5 C 0.264 3.736 6 C -0.544 4.544 7 H 0.059 0.941 8 C 0.011 3.989 9 N -0.927 5.927 10 Si 0.964 3.036 11 H -0.282 1.282 12 H -0.275 1.275 13 H -0.260 1.260 14 C 0.565 3.435 15 O -0.575 6.575 16 C -0.070 4.070 17 C -0.209 4.209 18 C 0.131 3.869 19 N -0.523 5.523 20 C 0.302 3.698 21 O -0.303 6.303 22 C 0.056 3.944 23 H 0.113 0.887 24 C -0.150 4.150 25 C 0.050 3.950 26 O -0.399 6.399 27 C 0.038 3.962 28 C -0.158 4.158 29 H 0.131 0.869 30 H 0.057 0.943 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.117 0.883 36 H -0.004 1.004 37 H 0.027 0.973 38 H 0.268 0.732 39 H 0.235 0.765 40 H 0.216 0.784 41 H 0.114 0.886 42 H 0.084 0.916 43 H 0.108 0.892 44 H 0.085 0.915 45 H 0.061 0.939 46 H 0.083 0.917 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.178 18.567 0.990 25.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C 0.020 3.980 3 C -0.232 4.232 4 N -0.342 5.342 5 C 0.143 3.857 6 C -0.582 4.582 7 H 0.078 0.922 8 C -0.189 4.189 9 N -0.566 5.566 10 Si 0.788 3.212 11 H -0.208 1.208 12 H -0.200 1.200 13 H -0.184 1.184 14 C 0.355 3.645 15 O -0.455 6.455 16 C -0.082 4.082 17 C -0.227 4.227 18 C -0.024 4.024 19 N -0.247 5.247 20 C 0.124 3.876 21 O -0.211 6.211 22 C 0.000 4.000 23 H 0.131 0.869 24 C -0.188 4.188 25 C -0.025 4.025 26 O -0.319 6.319 27 C -0.039 4.039 28 C -0.180 4.180 29 H 0.149 0.851 30 H 0.076 0.924 31 H 0.103 0.897 32 H 0.114 0.886 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.135 0.865 36 H 0.014 0.986 37 H 0.045 0.955 38 H 0.077 0.923 39 H 0.250 0.750 40 H 0.233 0.767 41 H 0.132 0.868 42 H 0.103 0.897 43 H 0.126 0.874 44 H 0.103 0.897 45 H 0.079 0.921 46 H 0.101 0.899 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -17.230 18.772 1.881 25.550 hybrid contribution 1.695 -1.460 0.283 2.255 sum -15.535 17.311 2.164 23.360 Atomic orbital electron populations 1.23328 0.92984 1.04645 1.05450 1.21545 0.94951 0.94238 0.87315 1.22875 1.02740 0.95203 1.02374 1.47942 1.31675 1.47173 1.07411 1.18859 0.82113 0.88457 0.96283 1.21740 0.91677 0.95580 1.49225 0.92236 1.25829 1.02636 0.95834 0.94572 1.70054 1.26912 1.10034 1.49595 0.85469 0.78510 0.79176 0.78036 1.20802 1.20026 1.18377 1.18519 0.77039 0.87161 0.81810 1.90671 1.57724 1.44994 1.52088 1.20295 0.98934 0.94844 0.94080 1.25176 0.97759 0.94434 1.05335 1.23223 0.93631 0.93977 0.91563 1.67161 1.20269 1.35235 1.02053 1.19386 0.93697 0.89497 0.84996 1.86305 1.78130 1.35320 1.21370 1.24081 0.95801 0.80065 1.00080 0.86924 1.23421 1.03703 0.97857 0.93787 1.23582 0.86526 0.92518 0.99880 1.88415 1.42024 1.50719 1.50715 1.23478 0.98107 0.90342 0.91965 1.20980 1.04096 0.95976 0.96939 0.85119 0.92409 0.89688 0.88649 0.92848 0.92812 0.86490 0.98565 0.95500 0.92338 0.75016 0.76718 0.86805 0.89722 0.87362 0.89710 0.92107 0.89896 0.85714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.27 7.77 71.98 0.56 -3.71 16 2 C 0.12 3.55 3.25 44.99 0.15 3.69 16 3 C -0.17 -4.22 8.04 71.98 0.58 -3.64 16 4 N -0.61 -25.84 2.37 -805.18 -1.91 -27.74 16 5 C 0.26 14.07 5.39 85.63 0.46 14.53 16 6 C -0.54 -30.39 9.39 25.60 0.24 -30.15 16 7 H 0.06 3.26 7.81 -2.91 -0.02 3.24 16 8 C 0.01 0.61 5.46 84.65 0.46 1.07 16 9 N -0.93 -55.31 13.29 21.45 0.28 -55.02 16 10 Si 0.96 44.10 29.54 68.60 2.03 46.12 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 12 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 13 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 14 C 0.57 24.84 6.23 86.88 0.54 25.38 16 15 O -0.58 -30.48 16.65 -3.78 -0.06 -30.55 16 16 C -0.07 -2.42 4.90 -19.90 -0.10 -2.52 16 17 C -0.21 -4.88 4.19 22.63 0.09 -4.79 16 18 C 0.13 2.45 11.17 84.62 0.94 3.40 16 19 N -0.52 -12.45 8.68 -309.14 -2.68 -15.13 16 20 C 0.30 8.84 7.48 84.80 0.63 9.47 16 21 O -0.30 -8.38 9.85 -90.09 -0.89 -9.27 16 22 C 0.06 1.16 3.19 31.86 0.10 1.27 16 23 H 0.11 2.14 7.14 -2.39 -0.02 2.13 16 24 C -0.15 -2.29 6.89 32.05 0.22 -2.07 16 25 C 0.05 0.70 7.78 72.65 0.56 1.26 16 26 O -0.40 -8.66 11.36 -148.98 -1.69 -10.35 16 27 C 0.04 0.84 7.58 72.45 0.55 1.39 16 28 C -0.16 -5.50 9.63 22.75 0.22 -5.28 16 29 H 0.13 1.33 7.70 -2.38 -0.02 1.31 16 30 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.09 1.94 3.57 -16.41 -0.06 1.88 16 32 H 0.10 2.78 7.79 -2.39 -0.02 2.76 16 33 H 0.05 1.55 5.21 -2.39 -0.01 1.54 16 34 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 35 H 0.12 1.50 6.80 -2.39 -0.02 1.48 16 36 H 0.00 -0.24 7.39 -2.38 -0.02 -0.25 16 37 H 0.03 1.45 7.84 -2.39 -0.02 1.43 16 38 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 39 H 0.23 4.38 0.80 -56.41 -0.05 4.33 16 40 H 0.22 1.73 8.06 -2.91 -0.02 1.71 16 41 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 45 H 0.06 1.53 8.05 -2.39 -0.02 1.51 16 46 H 0.08 1.71 8.14 -2.39 -0.02 1.70 16 47 H 0.12 4.78 7.97 -2.91 -0.02 4.76 16 Total: -1.00 -77.99 372.81 2.20 -75.79 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: 0.90 Total: 16.84 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: 6.22 Total: 9.32 kcal Atomic # 7 Polarization: -93.60 SS G_CDS: -4.30 Total: -97.90 kcal Atomic # 8 Polarization: -47.52 SS G_CDS: -2.64 Total: -50.16 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -77.99 2.20 -75.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541693740.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.581 kcal (2) G-P(sol) polarization free energy of solvation -77.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds