Wall clock time and date at job start Tue Mar 31 2020 18:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47071 * 2 1 4 4 N 1.46503 * 109.47313 * 119.99884 * 2 1 3 5 5 C 1.46499 * 119.99967 * 139.18699 * 4 2 1 6 6 C 1.50698 * 109.47016 * 270.00377 * 5 4 2 7 7 H 1.08003 * 120.00200 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00187 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00136 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00273 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47050 * 60.00238 * 10 8 6 12 12 H 1.48502 * 109.47217 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47291 * 300.00150 * 10 8 6 14 14 C 1.34766 * 119.99965 * 319.18598 * 4 2 1 15 15 O 1.21513 * 120.00299 * 145.35159 * 14 4 2 16 16 C 1.48169 * 120.00228 * 325.35283 * 14 4 2 17 17 C 1.39962 * 120.88750 * 28.76165 * 16 14 4 18 18 C 1.37979 * 119.13045 * 179.97438 * 17 16 14 19 19 N 1.31915 * 120.97900 * 359.97438 * 18 17 16 20 20 C 1.32170 * 121.96558 * 0.02562 * 19 18 17 21 21 O 1.35688 * 119.61538 * 180.02562 * 20 19 18 22 22 C 1.42896 * 117.00360 * 359.97438 * 21 20 19 23 23 H 1.08997 * 110.43417 * 328.90805 * 22 21 20 24 24 C 1.54817 * 110.48765 * 206.22603 * 22 21 20 25 25 C 1.54996 * 102.09046 * 220.44153 * 24 22 21 26 26 O 1.44387 * 103.49026 * 37.02176 * 25 24 22 27 27 C 1.43738 * 106.97405 * 319.93649 * 26 25 24 28 28 C 1.38893 * 120.75964 * 359.74008 * 20 19 18 29 29 H 1.09002 * 109.46927 * 287.95626 * 1 2 3 30 30 H 1.08997 * 109.47242 * 47.95608 * 1 2 3 31 31 H 1.08995 * 109.47101 * 167.95927 * 1 2 3 32 32 H 1.09001 * 109.47423 * 240.00059 * 2 1 3 33 33 H 1.09002 * 109.47447 * 212.98889 * 3 2 1 34 34 H 1.09007 * 109.47521 * 332.98530 * 3 2 1 35 35 H 1.09001 * 109.47199 * 92.98552 * 3 2 1 36 36 H 1.09004 * 109.47472 * 29.99692 * 5 4 2 37 37 H 1.08998 * 109.47438 * 150.00195 * 5 4 2 38 38 H 0.97006 * 120.00624 * 179.97438 * 9 8 6 39 39 H 1.08000 * 120.43452 * 359.95627 * 17 16 14 40 40 H 1.08000 * 119.50963 * 180.02562 * 18 17 16 41 41 H 1.08999 * 110.90889 * 338.64008 * 24 22 21 42 42 H 1.08995 * 110.90681 * 102.24413 * 24 22 21 43 43 H 1.09001 * 110.61985 * 278.52557 * 25 24 22 44 44 H 1.08999 * 110.75269 * 155.58920 * 25 24 22 45 45 H 1.08999 * 109.88419 * 267.09267 * 27 26 25 46 46 H 1.09007 * 110.00331 * 146.00669 * 27 26 25 47 47 H 1.07993 * 120.52597 * 180.28480 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 3.1678 -1.5940 1.1024 6 6 2.6864 -2.9897 0.8007 7 1 1.6299 -3.1845 0.6902 8 6 3.5947 -4.0183 0.6666 9 7 4.8812 -3.7813 0.8016 10 14 2.9980 -5.7486 0.2932 11 1 2.2609 -5.7507 -0.9960 12 1 4.1632 -6.6644 0.1981 13 1 2.0955 -6.2064 1.3801 14 6 1.4102 -0.4948 2.3828 15 8 1.3261 -1.4076 3.1804 16 6 0.8440 0.8336 2.7149 17 6 0.3807 1.6891 1.7087 18 6 -0.1401 2.9179 2.0590 19 7 -0.2062 3.2922 3.3222 20 6 0.2191 2.5173 4.3048 21 8 0.1278 2.9501 5.5876 22 6 -0.4353 4.2467 5.7963 23 1 -0.2146 4.8981 4.9507 24 6 0.0977 4.8635 7.1125 25 6 -1.1727 5.5341 7.6946 26 8 -2.2289 4.6128 7.3477 27 6 -1.9572 4.1450 6.0160 28 6 0.7529 1.2627 4.0399 29 1 -0.3633 0.3168 0.9776 30 1 -0.3633 0.6882 -0.7631 31 1 -0.3633 -1.0050 -0.2144 32 1 1.8933 -0.5138 -0.8900 33 1 2.9737 1.4978 -0.5595 34 1 1.2979 2.0903 -0.4668 35 1 2.2115 1.7672 1.0263 36 1 3.8302 -1.2577 0.3047 37 1 3.7090 -1.5929 2.0486 38 1 5.5203 -4.5051 0.7077 39 1 0.4306 1.3915 0.6717 40 1 -0.4997 3.5827 1.2876 41 1 0.4701 4.0885 7.7824 42 1 0.8706 5.6047 6.9097 43 1 -1.3419 6.5049 7.2289 44 1 -1.0935 5.6374 8.7768 45 1 -2.4789 4.7689 5.2903 46 1 -2.2781 3.1084 5.9122 47 1 1.0951 0.6308 4.8460 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541693741.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:06 Heat of formation + Delta-G solvation = 11.243132 kcal Electronic energy + Delta-G solvation = -29430.426949 eV Core-core repulsion = 25389.886665 eV Total energy + Delta-G solvation = -4040.540284 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.45935 -40.24108 -38.95183 -37.41205 -36.61071 -33.66002 -32.29429 -32.06547 -31.51078 -29.89076 -28.94144 -27.48443 -27.12958 -24.75582 -23.85777 -23.03202 -22.61372 -21.98303 -21.33080 -19.36475 -17.78016 -17.21149 -17.10058 -16.67778 -16.45441 -16.15768 -15.57178 -15.41970 -15.25767 -15.06044 -14.59758 -14.32497 -14.00221 -13.80375 -13.64707 -13.54537 -13.26836 -13.13008 -12.63141 -12.55153 -12.25712 -12.25541 -11.92471 -11.84920 -11.39809 -11.27651 -11.20650 -11.17259 -11.00087 -10.88455 -10.62955 -10.31964 -10.14129 -10.02034 -9.69454 -9.68376 -9.55385 -9.16759 -8.44871 -8.37255 -7.69645 -6.05561 -4.09705 0.86544 1.13603 2.71181 3.12507 3.32283 3.36591 3.40816 3.56975 3.69602 3.83421 4.10968 4.19136 4.44279 4.47668 4.65111 4.70466 4.71593 4.75880 4.90801 4.97299 5.03797 5.11823 5.23321 5.28462 5.28701 5.29857 5.37728 5.53324 5.55302 5.59764 5.63568 5.69891 5.72069 5.77180 5.92802 6.09014 6.17317 6.29880 6.36617 6.45561 6.47261 6.98445 7.14234 7.26429 7.50792 7.74119 7.90511 8.18527 8.26664 8.69853 8.95588 9.55215 11.02107 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020905 B = 0.002639 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.046630 B =10607.733676 C =11242.004566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.135 3.865 3 C -0.182 4.182 4 N -0.606 5.606 5 C 0.254 3.746 6 C -0.521 4.521 7 H 0.060 0.940 8 C 0.060 3.940 9 N -0.898 5.898 10 Si 0.898 3.102 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.276 1.276 14 C 0.560 3.440 15 O -0.499 6.499 16 C -0.054 4.054 17 C -0.226 4.226 18 C 0.113 3.887 19 N -0.532 5.532 20 C 0.303 3.697 21 O -0.292 6.292 22 C 0.060 3.940 23 H 0.104 0.896 24 C -0.155 4.155 25 C 0.048 3.952 26 O -0.374 6.374 27 C 0.033 3.967 28 C -0.134 4.134 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.101 0.899 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.037 0.963 37 H 0.034 0.966 38 H 0.264 0.736 39 H 0.215 0.785 40 H 0.161 0.839 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.064 0.936 44 H 0.099 0.901 45 H 0.071 0.929 46 H 0.091 0.909 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.044 20.910 3.459 23.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C 0.031 3.969 3 C -0.240 4.240 4 N -0.340 5.340 5 C 0.136 3.864 6 C -0.560 4.560 7 H 0.078 0.922 8 C -0.142 4.142 9 N -0.538 5.538 10 Si 0.726 3.274 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.201 1.201 14 C 0.345 3.655 15 O -0.373 6.373 16 C -0.066 4.066 17 C -0.245 4.245 18 C -0.041 4.041 19 N -0.256 5.256 20 C 0.124 3.876 21 O -0.200 6.200 22 C 0.003 3.997 23 H 0.122 0.878 24 C -0.192 4.192 25 C -0.028 4.028 26 O -0.293 6.293 27 C -0.044 4.044 28 C -0.155 4.155 29 H 0.109 0.891 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.119 0.881 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.055 0.945 37 H 0.052 0.948 38 H 0.073 0.927 39 H 0.231 0.769 40 H 0.178 0.822 41 H 0.111 0.889 42 H 0.109 0.891 43 H 0.082 0.918 44 H 0.117 0.883 45 H 0.089 0.911 46 H 0.109 0.891 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -10.323 20.902 4.475 23.738 hybrid contribution 0.270 -1.522 -0.652 1.677 sum -10.053 19.380 3.824 22.165 Atomic orbital electron populations 1.23285 0.95955 1.03683 1.03856 1.21097 0.93109 0.92470 0.90254 1.22974 1.01512 0.96592 1.02929 1.47978 1.33917 1.46824 1.05266 1.19311 0.81415 0.87617 0.98065 1.21424 0.93592 0.92897 1.48098 0.92211 1.24941 0.94777 0.99159 0.95329 1.69911 1.00854 1.32895 1.50119 0.86559 0.78147 0.83896 0.78837 1.20277 1.21263 1.20136 1.17947 0.78562 0.85958 0.83029 1.90775 1.53040 1.42503 1.50968 1.20719 0.96950 0.96090 0.92813 1.24983 0.99168 0.94725 1.05591 1.22337 0.96080 0.94448 0.91246 1.66996 1.21025 1.35948 1.01608 1.19528 0.93645 0.90164 0.84224 1.86356 1.77545 1.34535 1.21579 1.23713 0.92884 0.83724 0.99364 0.87821 1.23277 0.98975 1.00962 0.96017 1.23542 0.85116 0.92812 1.01352 1.88912 1.47451 1.61726 1.31229 1.23625 0.94590 1.01402 0.84769 1.21108 1.02394 0.94719 0.97315 0.89138 0.90725 0.91331 0.88068 0.92183 0.91587 0.90998 0.94466 0.94845 0.92679 0.76924 0.82180 0.88859 0.89103 0.91765 0.88315 0.91096 0.89067 0.83355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.69 7.77 37.15 0.29 -2.40 16 2 C 0.14 2.05 3.20 -67.93 -0.22 1.83 16 3 C -0.18 -2.17 8.05 37.16 0.30 -1.87 16 4 N -0.61 -12.31 2.37 -168.46 -0.40 -12.71 16 5 C 0.25 6.38 5.05 -5.19 -0.03 6.36 16 6 C -0.52 -14.51 9.28 -34.44 -0.32 -14.83 16 7 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 8 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 9 N -0.90 -26.23 13.29 55.43 0.74 -25.49 16 10 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 C 0.56 11.58 6.17 -12.19 -0.08 11.50 16 15 O -0.50 -12.50 16.99 5.35 0.09 -12.41 16 16 C -0.05 -0.89 4.90 -104.68 -0.51 -1.40 16 17 C -0.23 -2.84 4.19 -39.03 -0.16 -3.01 16 18 C 0.11 1.25 11.17 -17.61 -0.20 1.05 16 19 N -0.53 -6.73 8.66 -13.38 -0.12 -6.85 16 20 C 0.30 4.31 7.48 -17.16 -0.13 4.19 16 21 O -0.29 -3.92 9.73 -18.77 -0.18 -4.10 16 22 C 0.06 0.63 3.26 -25.20 -0.08 0.55 16 23 H 0.10 1.04 7.09 -51.93 -0.37 0.68 16 24 C -0.15 -1.26 6.90 -24.72 -0.17 -1.43 16 25 C 0.05 0.37 7.72 38.21 0.29 0.66 16 26 O -0.37 -4.16 11.52 -35.23 -0.41 -4.57 16 27 C 0.03 0.35 7.52 37.73 0.28 0.63 16 28 C -0.13 -2.13 9.63 -38.84 -0.37 -2.51 16 29 H 0.09 1.22 3.57 -66.88 -0.24 0.98 16 30 H 0.07 0.66 7.70 -51.93 -0.40 0.26 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.10 1.59 7.99 -51.93 -0.42 1.17 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.56 6.81 -51.93 -0.35 0.20 16 35 H 0.07 0.95 5.20 -51.93 -0.27 0.68 16 36 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 37 H 0.03 0.93 8.01 -51.93 -0.42 0.52 16 38 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.22 2.38 0.81 -109.34 -0.09 2.30 16 40 H 0.16 1.18 8.06 -52.49 -0.42 0.75 16 41 H 0.09 0.82 8.09 -51.93 -0.42 0.40 16 42 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.09 1.06 7.97 -51.93 -0.41 0.65 16 47 H 0.15 2.44 7.97 -52.49 -0.42 2.02 16 LS Contribution 373.45 15.07 5.63 5.63 Total: -1.00 -33.45 373.45 -7.59 -41.04 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -6.72 Total: 1.73 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -1.20 Total: 0.92 kcal Atomic # 7 Polarization: -45.28 SS G_CDS: 0.22 Total: -45.06 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -0.50 Total: -21.08 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.45 -7.59 -41.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541693741.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.283 kcal (2) G-P(sol) polarization free energy of solvation -33.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds