Wall clock time and date at job start Tue Mar 31 2020 18:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47071 * 2 1 4 4 N 1.46503 * 109.47313 * 119.99884 * 2 1 3 5 5 C 1.46499 * 119.99967 * 139.18699 * 4 2 1 6 6 C 1.50698 * 109.47016 * 270.00377 * 5 4 2 7 7 H 1.08003 * 120.00200 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00187 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00136 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00273 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47050 * 60.00238 * 10 8 6 12 12 H 1.48502 * 109.47217 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47291 * 300.00150 * 10 8 6 14 14 C 1.34766 * 119.99965 * 319.18598 * 4 2 1 15 15 O 1.21513 * 120.00299 * 145.35159 * 14 4 2 16 16 C 1.48169 * 120.00228 * 325.35283 * 14 4 2 17 17 C 1.39962 * 120.88750 * 28.76165 * 16 14 4 18 18 C 1.37979 * 119.13045 * 179.97438 * 17 16 14 19 19 N 1.31915 * 120.97900 * 359.97438 * 18 17 16 20 20 C 1.32170 * 121.96558 * 0.02562 * 19 18 17 21 21 O 1.35688 * 119.61538 * 180.02562 * 20 19 18 22 22 C 1.42896 * 117.00360 * 359.97438 * 21 20 19 23 23 H 1.08997 * 110.43417 * 328.90805 * 22 21 20 24 24 C 1.54817 * 110.48765 * 206.22603 * 22 21 20 25 25 C 1.54996 * 102.09046 * 220.44153 * 24 22 21 26 26 O 1.44387 * 103.49026 * 37.02176 * 25 24 22 27 27 C 1.43738 * 106.97405 * 319.93649 * 26 25 24 28 28 C 1.38893 * 120.75964 * 359.74008 * 20 19 18 29 29 H 1.09002 * 109.46927 * 287.95626 * 1 2 3 30 30 H 1.08997 * 109.47242 * 47.95608 * 1 2 3 31 31 H 1.08995 * 109.47101 * 167.95927 * 1 2 3 32 32 H 1.09001 * 109.47423 * 240.00059 * 2 1 3 33 33 H 1.09002 * 109.47447 * 212.98889 * 3 2 1 34 34 H 1.09007 * 109.47521 * 332.98530 * 3 2 1 35 35 H 1.09001 * 109.47199 * 92.98552 * 3 2 1 36 36 H 1.09004 * 109.47472 * 29.99692 * 5 4 2 37 37 H 1.08998 * 109.47438 * 150.00195 * 5 4 2 38 38 H 0.97006 * 120.00624 * 179.97438 * 9 8 6 39 39 H 1.08000 * 120.43452 * 359.95627 * 17 16 14 40 40 H 1.08000 * 119.50963 * 180.02562 * 18 17 16 41 41 H 1.08999 * 110.90889 * 338.64008 * 24 22 21 42 42 H 1.08995 * 110.90681 * 102.24413 * 24 22 21 43 43 H 1.09001 * 110.61985 * 278.52557 * 25 24 22 44 44 H 1.08999 * 110.75269 * 155.58920 * 25 24 22 45 45 H 1.08999 * 109.88419 * 267.09267 * 27 26 25 46 46 H 1.09007 * 110.00331 * 146.00669 * 27 26 25 47 47 H 1.07993 * 120.52597 * 180.28480 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 3.1678 -1.5940 1.1024 6 6 2.6864 -2.9897 0.8007 7 1 1.6299 -3.1845 0.6902 8 6 3.5947 -4.0183 0.6666 9 7 4.8812 -3.7813 0.8016 10 14 2.9980 -5.7486 0.2932 11 1 2.2609 -5.7507 -0.9960 12 1 4.1632 -6.6644 0.1981 13 1 2.0955 -6.2064 1.3801 14 6 1.4102 -0.4948 2.3828 15 8 1.3261 -1.4076 3.1804 16 6 0.8440 0.8336 2.7149 17 6 0.3807 1.6891 1.7087 18 6 -0.1401 2.9179 2.0590 19 7 -0.2062 3.2922 3.3222 20 6 0.2191 2.5173 4.3048 21 8 0.1278 2.9501 5.5876 22 6 -0.4353 4.2467 5.7963 23 1 -0.2146 4.8981 4.9507 24 6 0.0977 4.8635 7.1125 25 6 -1.1727 5.5341 7.6946 26 8 -2.2289 4.6128 7.3477 27 6 -1.9572 4.1450 6.0160 28 6 0.7529 1.2627 4.0399 29 1 -0.3633 0.3168 0.9776 30 1 -0.3633 0.6882 -0.7631 31 1 -0.3633 -1.0050 -0.2144 32 1 1.8933 -0.5138 -0.8900 33 1 2.9737 1.4978 -0.5595 34 1 1.2979 2.0903 -0.4668 35 1 2.2115 1.7672 1.0263 36 1 3.8302 -1.2577 0.3047 37 1 3.7090 -1.5929 2.0486 38 1 5.5203 -4.5051 0.7077 39 1 0.4306 1.3915 0.6717 40 1 -0.4997 3.5827 1.2876 41 1 0.4701 4.0885 7.7824 42 1 0.8706 5.6047 6.9097 43 1 -1.3419 6.5049 7.2289 44 1 -1.0935 5.6374 8.7768 45 1 -2.4789 4.7689 5.2903 46 1 -2.2781 3.1084 5.9122 47 1 1.0951 0.6308 4.8460 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541693741.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:05 Heat of formation + Delta-G solvation = -13.020077 kcal Electronic energy + Delta-G solvation = -29431.479081 eV Core-core repulsion = 25389.886665 eV Total energy + Delta-G solvation = -4041.592416 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.64859 -41.25306 -40.01042 -38.63637 -37.91423 -35.50831 -33.80601 -33.28604 -32.59086 -30.88763 -29.76564 -29.30196 -28.23543 -26.20639 -24.87554 -24.49131 -23.65297 -23.25723 -22.27002 -20.51295 -19.03894 -18.67485 -18.22129 -18.13584 -17.62099 -17.18356 -16.90815 -16.76632 -16.41310 -16.13970 -15.99701 -15.69287 -15.34362 -15.04691 -14.71915 -14.65109 -14.30353 -14.24669 -13.90189 -13.77219 -13.55194 -13.35131 -13.22069 -13.17806 -12.76982 -12.58088 -12.53175 -12.47016 -12.24602 -12.08060 -11.94842 -11.86092 -11.72888 -11.46945 -10.99288 -10.82084 -10.75109 -10.64603 -10.44849 -9.41867 -9.37849 -8.22482 -6.36189 -0.34357 0.09794 1.34646 1.39018 1.46170 1.55336 1.81152 2.21046 2.40070 2.70500 2.88996 3.06032 3.19675 3.40709 3.43260 3.70088 3.74837 3.86519 3.91841 3.92618 4.01887 4.13530 4.18241 4.29922 4.37756 4.56079 4.60600 4.64764 4.65351 4.67038 4.77947 4.82276 4.85679 4.87000 4.95852 4.96185 5.02838 5.09312 5.17697 5.28949 5.35187 5.45082 5.60675 5.76489 5.86520 6.04546 6.17250 6.63401 6.71583 6.72538 7.08572 7.34394 8.83200 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020905 B = 0.002639 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.046630 B =10607.733676 C =11242.004566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.121 3.879 3 C -0.176 4.176 4 N -0.611 5.611 5 C 0.269 3.731 6 C -0.536 4.536 7 H 0.048 0.952 8 C 0.009 3.991 9 N -0.928 5.928 10 Si 0.962 3.038 11 H -0.260 1.260 12 H -0.277 1.277 13 H -0.283 1.283 14 C 0.555 3.445 15 O -0.564 6.564 16 C -0.069 4.069 17 C -0.210 4.210 18 C 0.134 3.866 19 N -0.522 5.522 20 C 0.304 3.696 21 O -0.308 6.308 22 C 0.054 3.946 23 H 0.114 0.886 24 C -0.152 4.152 25 C 0.047 3.953 26 O -0.399 6.399 27 C 0.036 3.964 28 C -0.159 4.159 29 H 0.085 0.915 30 H 0.131 0.869 31 H 0.046 0.954 32 H 0.093 0.907 33 H 0.060 0.940 34 H 0.119 0.881 35 H 0.058 0.942 36 H 0.036 0.964 37 H -0.010 1.010 38 H 0.267 0.733 39 H 0.233 0.767 40 H 0.217 0.783 41 H 0.080 0.920 42 H 0.114 0.886 43 H 0.087 0.913 44 H 0.114 0.886 45 H 0.087 0.913 46 H 0.071 0.929 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.835 24.163 1.311 26.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C 0.019 3.981 3 C -0.233 4.233 4 N -0.343 5.343 5 C 0.148 3.852 6 C -0.575 4.575 7 H 0.066 0.934 8 C -0.190 4.190 9 N -0.568 5.568 10 Si 0.786 3.214 11 H -0.184 1.184 12 H -0.202 1.202 13 H -0.209 1.209 14 C 0.343 3.657 15 O -0.442 6.442 16 C -0.081 4.081 17 C -0.228 4.228 18 C -0.022 4.022 19 N -0.246 5.246 20 C 0.126 3.874 21 O -0.216 6.216 22 C -0.002 4.002 23 H 0.132 0.868 24 C -0.189 4.189 25 C -0.029 4.029 26 O -0.319 6.319 27 C -0.042 4.042 28 C -0.181 4.181 29 H 0.103 0.897 30 H 0.149 0.851 31 H 0.065 0.935 32 H 0.111 0.889 33 H 0.079 0.921 34 H 0.137 0.863 35 H 0.077 0.923 36 H 0.054 0.946 37 H 0.009 0.991 38 H 0.076 0.924 39 H 0.249 0.751 40 H 0.234 0.766 41 H 0.099 0.901 42 H 0.132 0.868 43 H 0.105 0.895 44 H 0.132 0.868 45 H 0.105 0.895 46 H 0.089 0.911 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -12.125 24.205 2.310 27.170 hybrid contribution 0.820 -2.452 0.027 2.586 sum -11.305 21.753 2.337 24.626 Atomic orbital electron populations 1.23312 0.93694 1.04074 1.05310 1.21537 0.95019 0.94120 0.87470 1.22919 1.03159 0.94532 1.02708 1.47992 1.32600 1.46431 1.07310 1.18799 0.82977 0.87976 0.95432 1.21659 0.93065 0.94558 1.48205 0.93365 1.25787 0.94934 1.03214 0.95066 1.70015 1.01846 1.34194 1.50716 0.85557 0.77858 0.78992 0.78942 1.18438 1.20160 1.20905 1.18660 0.77601 0.87221 0.82175 1.90721 1.55975 1.44944 1.52594 1.20275 0.99191 0.94478 0.94111 1.25154 0.97916 0.94456 1.05299 1.23239 0.93382 0.93976 0.91583 1.67174 1.20266 1.35177 1.02001 1.19398 0.93449 0.89567 0.85025 1.86343 1.77711 1.36242 1.21352 1.24000 0.92950 0.82487 1.00793 0.86829 1.23333 0.99937 1.01056 0.94616 1.23784 0.83626 0.92924 1.02572 1.88882 1.48805 1.62726 1.31490 1.23591 0.94751 1.00671 0.85142 1.20973 1.04413 0.95898 0.96826 0.89659 0.85117 0.93487 0.88930 0.92066 0.86321 0.92291 0.94621 0.99143 0.92388 0.75140 0.76623 0.90134 0.86803 0.89521 0.86826 0.89464 0.91063 0.85821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.75 7.77 71.98 0.56 -4.19 16 2 C 0.12 3.52 3.20 44.99 0.14 3.67 16 3 C -0.18 -3.60 8.05 71.98 0.58 -3.02 16 4 N -0.61 -25.90 2.37 -805.19 -1.91 -27.81 16 5 C 0.27 14.35 5.05 85.63 0.43 14.79 16 6 C -0.54 -31.24 9.28 25.60 0.24 -31.01 16 7 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 8 C 0.01 0.52 5.46 84.65 0.46 0.98 16 9 N -0.93 -55.88 13.29 21.45 0.28 -55.60 16 10 Si 0.96 45.71 29.54 68.60 2.03 47.74 16 11 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 12 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 13 H -0.28 -13.72 7.11 99.48 0.71 -13.01 16 14 C 0.55 24.43 6.17 86.88 0.54 24.96 16 15 O -0.56 -30.86 16.99 -3.76 -0.06 -30.92 16 16 C -0.07 -2.31 4.90 -19.90 -0.10 -2.41 16 17 C -0.21 -4.65 4.19 22.63 0.09 -4.55 16 18 C 0.13 2.28 11.17 84.62 0.94 3.23 16 19 N -0.52 -11.59 8.66 -309.14 -2.68 -14.27 16 20 C 0.30 8.50 7.48 84.80 0.63 9.13 16 21 O -0.31 -8.30 9.73 -90.07 -0.88 -9.18 16 22 C 0.05 1.05 3.26 31.59 0.10 1.15 16 23 H 0.11 1.97 7.09 -2.39 -0.02 1.95 16 24 C -0.15 -2.23 6.90 31.90 0.22 -2.01 16 25 C 0.05 0.61 7.72 72.67 0.56 1.17 16 26 O -0.40 -8.42 11.52 -148.98 -1.72 -10.13 16 27 C 0.04 0.71 7.52 72.35 0.54 1.25 16 28 C -0.16 -5.34 9.63 22.75 0.22 -5.12 16 29 H 0.09 2.10 3.57 -16.43 -0.06 2.04 16 30 H 0.13 1.53 7.70 -2.39 -0.02 1.52 16 31 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.09 2.85 7.99 -2.39 -0.02 2.83 16 33 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.12 1.21 6.81 -2.38 -0.02 1.19 16 35 H 0.06 1.41 5.20 -2.39 -0.01 1.40 16 36 H 0.04 1.89 8.07 -2.38 -0.02 1.87 16 37 H -0.01 -0.58 8.01 -2.39 -0.02 -0.60 16 38 H 0.27 15.15 8.31 -92.70 -0.77 14.38 16 39 H 0.23 4.17 0.81 -56.32 -0.05 4.12 16 40 H 0.22 1.39 8.06 -2.91 -0.02 1.37 16 41 H 0.08 1.39 8.09 -2.39 -0.02 1.38 16 42 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.07 1.67 7.97 -2.38 -0.02 1.65 16 47 H 0.12 4.61 7.97 -2.91 -0.02 4.59 16 Total: -1.00 -80.70 373.45 2.15 -78.55 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: 0.90 Total: 13.59 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: 6.17 Total: 8.03 kcal Atomic # 7 Polarization: -93.38 SS G_CDS: -4.30 Total: -97.67 kcal Atomic # 8 Polarization: -47.58 SS G_CDS: -2.66 Total: -50.23 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -80.70 2.15 -78.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541693741.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.533 kcal (2) G-P(sol) polarization free energy of solvation -80.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds