Wall clock time and date at job start Tue Mar 31 2020 18:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47637 * 2 1 4 4 N 1.46500 * 109.47649 * 120.00257 * 2 1 3 5 5 C 1.46499 * 119.99868 * 300.00076 * 4 2 1 6 6 C 1.50703 * 109.46769 * 274.99426 * 5 4 2 7 7 H 1.07996 * 120.00298 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99671 * 179.97438 * 6 5 4 9 9 N 1.31518 * 119.99994 * 0.02562 * 8 6 5 10 10 Si 1.86792 * 119.99870 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47168 * 60.00608 * 10 8 6 12 12 H 1.48501 * 109.47406 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.47514 * 300.00402 * 10 8 6 14 14 S 1.65604 * 120.00095 * 119.99536 * 4 2 1 15 15 O 1.42091 * 104.27694 * 153.93373 * 14 4 2 16 16 O 1.42102 * 104.27686 * 26.07477 * 14 4 2 17 17 C 1.81403 * 104.44911 * 270.00504 * 14 4 2 18 18 C 1.52998 * 109.46995 * 180.02562 * 17 14 4 19 19 C 1.53006 * 109.47044 * 180.02562 * 18 17 14 20 20 N 1.46898 * 109.46953 * 180.02562 * 19 18 17 21 21 C 1.47015 * 110.99642 * 293.62955 * 20 19 18 22 22 C 1.53098 * 109.25723 * 177.60943 * 21 20 19 23 23 O 1.43023 * 109.25952 * 56.85124 * 22 21 20 24 24 C 1.43014 * 113.73189 * 301.32868 * 23 22 21 25 25 C 1.47016 * 110.99994 * 169.99953 * 20 19 18 26 26 H 1.09008 * 109.46482 * 299.99757 * 1 2 3 27 27 H 1.08997 * 109.47331 * 59.99313 * 1 2 3 28 28 H 1.08990 * 109.47207 * 180.02562 * 1 2 3 29 29 H 1.09009 * 109.47222 * 240.00301 * 2 1 3 30 30 H 1.08993 * 109.47326 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.46819 * 300.01188 * 3 2 1 32 32 H 1.08999 * 109.46605 * 59.99830 * 3 2 1 33 33 H 1.09000 * 109.47394 * 34.99536 * 5 4 2 34 34 H 1.08999 * 109.47306 * 154.99722 * 5 4 2 35 35 H 0.97002 * 120.00055 * 179.97438 * 9 8 6 36 36 H 1.08994 * 109.47082 * 59.99626 * 17 14 4 37 37 H 1.09000 * 109.47158 * 299.99928 * 17 14 4 38 38 H 1.08994 * 109.47742 * 59.99748 * 18 17 14 39 39 H 1.09009 * 109.47009 * 299.99602 * 18 17 14 40 40 H 1.08994 * 109.47199 * 59.99242 * 19 18 17 41 41 H 1.08996 * 109.46529 * 299.99637 * 19 18 17 42 42 H 1.08999 * 109.50673 * 297.54208 * 21 20 19 43 43 H 1.09004 * 109.50788 * 57.67624 * 21 20 19 44 44 H 1.08997 * 109.51060 * 296.91507 * 22 21 20 45 45 H 1.08998 * 109.54334 * 176.80599 * 22 21 20 46 46 H 1.08999 * 109.51224 * 298.73604 * 24 23 22 47 47 H 1.09005 * 109.53853 * 178.62625 * 24 23 22 48 48 H 1.09000 * 109.50136 * 302.32362 * 25 20 19 49 49 H 1.08996 * 109.50988 * 62.41201 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0185 -0.6906 1.1961 5 6 1.6646 -0.1902 2.5267 6 6 2.6341 0.8904 2.9311 7 1 3.4335 1.1761 2.2636 8 6 2.4998 1.5150 4.1529 9 7 1.5259 1.1675 4.9656 10 14 3.7018 2.8539 4.6545 11 1 3.6401 3.9673 3.6738 12 1 3.3431 3.3614 6.0032 13 1 5.0782 2.2973 4.6855 14 16 2.9705 -2.0371 1.0440 15 8 3.7317 -2.0654 2.2436 16 8 3.6005 -1.8799 -0.2199 17 6 1.7964 -3.4193 1.0025 18 6 2.5633 -4.7358 0.8632 19 6 1.5729 -5.9016 0.8275 20 7 2.3093 -7.1657 0.6944 21 6 2.9832 -7.2480 -0.6096 22 6 3.7849 -8.5502 -0.6824 23 8 2.9083 -9.6572 -0.4553 24 6 2.2358 -9.6095 0.8060 25 6 1.4183 -8.3180 0.8938 26 1 -0.3632 0.5139 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5138 -0.8901 30 1 3.1301 1.4424 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6768 1.9563 0.8900 33 1 0.6541 0.2179 2.5046 34 1 1.7106 -1.0075 3.2464 35 1 1.4316 1.6066 5.8254 36 1 1.1233 -3.2988 0.1537 37 1 1.2177 -3.4323 1.9261 38 1 3.2361 -4.8561 1.7122 39 1 3.1423 -4.7231 -0.0603 40 1 0.9004 -5.7812 -0.0218 41 1 0.9937 -5.9145 1.7507 42 1 2.2387 -7.2339 -1.4056 43 1 3.6569 -6.3989 -0.7254 44 1 4.5644 -8.5409 0.0794 45 1 4.2407 -8.6432 -1.6682 46 1 2.9701 -9.6309 1.6112 47 1 1.5706 -10.4682 0.8971 48 1 0.9497 -8.2499 1.8756 49 1 0.6484 -8.3206 0.1223 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000545207547.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:02 Heat of formation + Delta-G solvation = -141.143258 kcal Electronic energy + Delta-G solvation = -28167.982503 eV Core-core repulsion = 24256.278200 eV Total energy + Delta-G solvation = -3911.704303 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.57041 -38.43363 -38.05362 -37.49679 -36.84215 -34.75428 -34.37474 -32.20077 -32.14469 -29.27780 -28.81084 -27.85325 -25.94431 -25.02894 -24.72169 -22.63154 -21.61820 -21.36316 -19.58884 -18.69386 -18.52391 -17.81127 -17.33120 -17.06925 -16.95030 -16.61885 -16.28670 -16.02322 -15.91276 -15.43255 -15.15047 -14.97888 -14.91333 -14.69358 -14.06083 -13.75241 -13.70196 -13.47163 -13.43011 -13.11845 -13.08568 -13.01883 -12.95278 -12.88767 -12.71621 -12.57875 -12.48397 -12.36442 -12.32013 -12.12572 -12.02982 -11.81714 -11.66440 -11.51338 -11.43174 -11.25210 -10.67713 -10.51168 -9.66568 -9.44534 -8.14031 -6.20595 -0.61845 1.38699 1.41935 1.48426 1.85032 2.44058 2.63969 2.93844 3.06736 3.16951 3.27968 3.65418 3.73687 3.83126 3.94274 3.96661 4.01452 4.18670 4.21440 4.32708 4.35170 4.36468 4.42234 4.46884 4.59112 4.62368 4.66588 4.72787 4.80745 4.85311 4.89596 4.93458 4.96852 4.97918 5.02401 5.13813 5.16761 5.28375 5.43426 5.60915 5.71301 5.84497 5.89374 5.92185 6.06898 6.15924 6.22504 6.85458 7.45015 8.93293 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018814 B = 0.002745 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.919554 B =10197.666279 C =10684.018228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.138 3.862 3 C -0.152 4.152 4 N -0.990 5.990 5 C 0.272 3.728 6 C -0.526 4.526 7 H 0.049 0.951 8 C 0.011 3.989 9 N -0.926 5.926 10 Si 0.944 3.056 11 H -0.266 1.266 12 H -0.279 1.279 13 H -0.282 1.282 14 S 2.594 3.406 15 O -0.993 6.993 16 O -0.994 6.994 17 C -0.605 4.605 18 C -0.113 4.113 19 C 0.069 3.931 20 N -0.553 5.553 21 C 0.008 3.992 22 C 0.061 3.939 23 O -0.405 6.405 24 C 0.060 3.940 25 C 0.017 3.983 26 H 0.047 0.953 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.099 0.901 30 H 0.031 0.969 31 H 0.080 0.920 32 H 0.054 0.946 33 H 0.036 0.964 34 H 0.016 0.984 35 H 0.264 0.736 36 H 0.161 0.839 37 H 0.146 0.854 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.053 0.947 41 H 0.090 0.910 42 H 0.046 0.954 43 H 0.092 0.908 44 H 0.059 0.941 45 H 0.114 0.886 46 H 0.058 0.942 47 H 0.117 0.883 48 H 0.099 0.901 49 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.730 -17.413 -12.401 21.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.033 3.967 3 C -0.211 4.211 4 N -0.827 5.827 5 C 0.148 3.852 6 C -0.566 4.566 7 H 0.067 0.933 8 C -0.187 4.187 9 N -0.567 5.567 10 Si 0.770 3.230 11 H -0.191 1.191 12 H -0.204 1.204 13 H -0.208 1.208 14 S 2.692 3.308 15 O -0.984 6.984 16 O -0.984 6.984 17 C -0.738 4.738 18 C -0.153 4.153 19 C -0.060 4.060 20 N -0.279 5.279 21 C -0.120 4.120 22 C -0.016 4.016 23 O -0.324 6.324 24 C -0.017 4.017 25 C -0.110 4.110 26 H 0.066 0.934 27 H 0.104 0.896 28 H 0.090 0.910 29 H 0.117 0.883 30 H 0.050 0.950 31 H 0.098 0.902 32 H 0.073 0.927 33 H 0.054 0.946 34 H 0.034 0.966 35 H 0.073 0.927 36 H 0.179 0.821 37 H 0.164 0.836 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.071 0.929 41 H 0.108 0.892 42 H 0.064 0.936 43 H 0.110 0.890 44 H 0.077 0.923 45 H 0.132 0.868 46 H 0.077 0.923 47 H 0.135 0.865 48 H 0.117 0.883 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -3.520 -17.500 -12.039 21.531 hybrid contribution -0.369 1.092 0.440 1.234 sum -3.889 -16.408 -11.599 20.467 Atomic orbital electron populations 1.22137 0.93566 1.02977 1.02750 1.20956 0.95559 0.93997 0.86226 1.22093 0.99996 0.96678 1.02329 1.57428 1.70228 1.42154 1.12919 1.18570 0.95862 0.93547 0.77172 1.21782 1.13336 1.19664 1.01798 0.93274 1.25609 0.97169 0.99461 0.96475 1.69982 1.32742 1.43732 1.10207 0.85822 0.79465 0.79946 0.77764 1.19096 1.20400 1.20785 1.05147 0.76478 0.76354 0.72777 1.93563 1.69314 1.86853 1.48662 1.93477 1.74523 1.86154 1.44275 1.30451 1.16555 1.13121 1.13664 1.21369 0.98662 0.91393 1.03840 1.22036 0.94321 0.86964 1.02683 1.62181 1.31491 1.02592 1.31647 1.22944 0.99060 1.00095 0.89912 1.22779 0.91640 0.84127 1.03017 1.87954 1.60607 1.45788 1.38031 1.22814 0.95882 0.97403 0.85555 1.22844 0.94644 0.90680 1.02867 0.93381 0.89598 0.91046 0.88307 0.94992 0.90158 0.92656 0.94625 0.96591 0.92689 0.82144 0.83564 0.90556 0.90066 0.92915 0.89195 0.93608 0.89018 0.92312 0.86801 0.92320 0.86540 0.88288 0.93790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.04 9.16 71.98 0.66 -3.38 16 2 C 0.14 4.52 3.19 44.99 0.14 4.66 16 3 C -0.15 -5.40 8.20 71.98 0.59 -4.81 16 4 N -0.99 -38.91 2.66 -497.39 -1.32 -40.23 16 5 C 0.27 13.22 4.58 85.63 0.39 13.61 16 6 C -0.53 -29.32 7.53 25.60 0.19 -29.12 16 7 H 0.05 2.80 7.07 -2.91 -0.02 2.78 16 8 C 0.01 0.65 5.46 84.65 0.46 1.11 16 9 N -0.93 -53.92 13.29 21.45 0.28 -53.63 16 10 Si 0.94 45.19 29.54 68.60 2.03 47.22 16 11 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 12 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 13 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 14 S 2.59 95.86 5.36 -56.49 -0.30 95.55 16 15 O -0.99 -47.37 16.99 -127.65 -2.17 -49.54 16 16 O -0.99 -38.92 16.57 -127.65 -2.12 -41.04 16 17 C -0.60 -14.24 6.18 71.98 0.44 -13.79 16 18 C -0.11 -2.50 5.16 30.60 0.16 -2.34 16 19 C 0.07 1.22 4.96 86.31 0.43 1.65 16 20 N -0.55 -10.11 4.73 -895.22 -4.23 -14.34 16 21 C 0.01 0.13 5.44 86.31 0.47 0.60 16 22 C 0.06 0.98 7.01 72.01 0.50 1.49 16 23 O -0.40 -7.58 10.83 -148.98 -1.61 -9.20 16 24 C 0.06 0.87 7.01 72.01 0.50 1.38 16 25 C 0.02 0.26 5.64 86.31 0.49 0.75 16 26 H 0.05 1.47 6.69 -2.38 -0.02 1.46 16 27 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.10 2.88 6.87 -2.38 -0.02 2.86 16 30 H 0.03 1.23 7.93 -2.39 -0.02 1.21 16 31 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.05 2.26 6.65 -2.39 -0.02 2.25 16 33 H 0.04 1.74 6.45 -2.39 -0.02 1.73 16 34 H 0.02 0.84 7.61 -2.39 -0.02 0.82 16 35 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 36 H 0.16 2.71 8.14 -2.39 -0.02 2.69 16 37 H 0.15 3.22 8.14 -2.39 -0.02 3.20 16 38 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.08 1.69 6.52 -2.38 -0.02 1.68 16 40 H 0.05 0.82 8.12 -2.39 -0.02 0.80 16 41 H 0.09 1.48 8.04 -2.39 -0.02 1.46 16 42 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.09 1.53 6.38 -2.38 -0.02 1.51 16 44 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.12 1.19 8.14 -2.38 -0.02 1.17 16 48 H 0.10 1.23 8.09 -2.39 -0.02 1.21 16 49 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -74.40 393.22 -3.10 -77.50 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: 0.91 Total: 15.92 kcal Atomic # 6 Polarization: -33.64 SS G_CDS: 5.44 Total: -28.20 kcal Atomic # 7 Polarization: -102.93 SS G_CDS: -5.27 Total: -108.20 kcal Atomic # 8 Polarization: -93.88 SS G_CDS: -5.90 Total: -99.78 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Atomic # 16 Polarization: 95.86 SS G_CDS: -0.30 Total: 95.55 kcal Total: -74.40 -3.10 -77.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000545207547.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.646 kcal (2) G-P(sol) polarization free energy of solvation -74.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds