Wall clock time and date at job start Tue Mar 31 2020 18:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46956 * 2 1 4 4 N 1.46499 * 109.46920 * 119.99566 * 2 1 3 5 5 C 1.46501 * 119.99997 * 300.00261 * 4 2 1 6 6 C 1.50695 * 109.47201 * 269.99984 * 5 4 2 7 7 H 1.08003 * 120.00289 * 359.97438 * 6 5 4 8 8 C 1.37882 * 120.00354 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99439 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00384 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47305 * 89.99113 * 10 8 6 12 12 H 1.48496 * 109.47365 * 209.99588 * 10 8 6 13 13 H 1.48509 * 109.46914 * 329.99420 * 10 8 6 14 14 C 1.34781 * 120.00066 * 119.99906 * 4 2 1 15 15 O 1.21277 * 119.99839 * 179.97438 * 14 4 2 16 16 C 1.50694 * 119.99636 * 0.02562 * 14 4 2 17 17 N 1.46500 * 109.46960 * 179.97438 * 16 14 4 18 18 C 1.34784 * 120.00183 * 179.97438 * 17 16 14 19 19 O 1.21280 * 119.99622 * 359.97438 * 18 17 16 20 20 C 1.50698 * 120.00106 * 179.97438 * 18 17 16 21 21 C 1.50698 * 109.47224 * 179.97438 * 20 18 17 22 22 C 1.38269 * 119.94432 * 89.99865 * 21 20 18 23 23 C 1.38137 * 120.06013 * 180.02562 * 22 21 20 24 24 C 1.38737 * 119.94162 * 359.97438 * 23 22 21 25 25 O 1.35896 * 120.05545 * 180.02562 * 24 23 22 26 26 C 1.38734 * 119.88732 * 0.27760 * 24 23 22 27 27 C 1.38140 * 119.94299 * 359.46795 * 26 24 23 28 28 H 1.09002 * 109.47501 * 300.00463 * 1 2 3 29 29 H 1.09005 * 109.47016 * 60.00201 * 1 2 3 30 30 H 1.09006 * 109.47260 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47289 * 239.99933 * 2 1 3 32 32 H 1.08998 * 109.46976 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.46877 * 299.99358 * 3 2 1 34 34 H 1.08996 * 109.47176 * 59.99864 * 3 2 1 35 35 H 1.08997 * 109.47404 * 30.00183 * 5 4 2 36 36 H 1.09011 * 109.47078 * 149.99973 * 5 4 2 37 37 H 0.97001 * 120.00066 * 180.02562 * 9 8 6 38 38 H 1.08997 * 109.47648 * 59.99679 * 16 14 4 39 39 H 1.09005 * 109.47096 * 299.99037 * 16 14 4 40 40 H 0.97000 * 120.00465 * 359.97438 * 17 16 14 41 41 H 1.08997 * 109.47005 * 59.99785 * 20 18 17 42 42 H 1.09005 * 109.46704 * 299.99776 * 20 18 17 43 43 H 1.08008 * 119.96973 * 0.02562 * 22 21 20 44 44 H 1.07997 * 120.03660 * 179.97438 * 23 22 21 45 45 H 0.96700 * 114.00170 * 90.00174 * 25 24 23 46 46 H 1.07999 * 120.02623 * 179.72382 * 26 24 23 47 47 H 1.08003 * 119.97390 * 180.23377 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.6643 -0.1899 2.5268 6 6 2.7029 0.8020 2.9830 7 1 3.5430 1.0359 2.3458 8 6 2.5814 1.4103 4.2144 9 7 1.5587 1.1252 4.9905 10 14 3.8685 2.6404 4.7797 11 1 3.4747 4.0044 4.3440 12 1 3.9712 2.6042 6.2606 13 1 5.1829 2.2906 4.1836 14 6 2.7931 -1.7864 1.0727 15 8 3.1977 -2.3577 2.0630 16 6 3.1576 -2.3010 -0.2960 17 7 4.0002 -3.4918 -0.1615 18 6 4.4495 -4.1273 -1.2619 19 8 4.1559 -3.7134 -2.3634 20 6 5.3168 -5.3519 -1.1235 21 6 5.6802 -5.8674 -2.4922 22 6 6.8245 -5.4111 -3.1201 23 6 7.1596 -5.8816 -4.3749 24 6 6.3472 -6.8132 -5.0049 25 8 6.6749 -7.2780 -6.2391 26 6 5.1968 -7.2655 -4.3750 27 6 4.8689 -6.7958 -3.1179 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 3.1299 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 0.6903 0.2975 2.4844 36 1 1.6236 -1.0225 3.2293 37 1 1.4729 1.5534 5.8567 38 1 3.7028 -1.5302 -0.8407 39 1 2.2494 -2.5579 -0.8413 40 1 4.2348 -3.8231 0.7195 41 1 4.7725 -6.1228 -0.5781 42 1 6.2252 -5.0941 -0.5789 43 1 7.4568 -4.6861 -2.6291 44 1 8.0532 -5.5246 -4.8652 45 1 7.2337 -8.0671 -6.2267 46 1 4.5604 -7.9873 -4.8652 47 1 3.9755 -7.1504 -2.6255 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000547320788.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:46 Heat of formation + Delta-G solvation = -94.462991 kcal Electronic energy + Delta-G solvation = -28136.683511 eV Core-core repulsion = 24091.559465 eV Total energy + Delta-G solvation = -4045.124046 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.37123 -39.69064 -38.88706 -37.03785 -36.17294 -34.28725 -32.87310 -32.31323 -31.23024 -30.95034 -29.07464 -27.36977 -26.77482 -25.84781 -23.06352 -22.88170 -21.98719 -21.34579 -20.38742 -18.68392 -18.50111 -17.40671 -16.56428 -16.48584 -16.25263 -16.01486 -15.80460 -15.46285 -15.31202 -14.81600 -14.45002 -14.22083 -13.97551 -13.69102 -13.61912 -13.47598 -13.14494 -12.94422 -12.58922 -12.38272 -12.27458 -12.05714 -11.84554 -11.76342 -11.71194 -11.60424 -11.25123 -10.98868 -10.89792 -10.71228 -10.62497 -10.43086 -10.08289 -9.97668 -9.61188 -9.20362 -9.12782 -9.08816 -8.71629 -8.46679 -7.78338 -6.08302 -4.11770 0.95231 1.14285 2.61010 3.01097 3.20248 3.26887 3.34166 3.38282 3.47133 3.87020 3.94836 4.40849 4.43812 4.56904 4.74292 4.81267 4.93812 5.00889 5.11636 5.21291 5.26362 5.27451 5.40263 5.45529 5.51612 5.56729 5.61373 5.62107 5.76869 5.98385 6.02949 6.10266 6.18044 6.20482 6.33502 6.33637 6.37719 6.55714 6.56465 6.91855 7.01332 7.36482 7.38168 7.44100 7.55033 7.87690 8.17962 8.18976 8.31831 8.78269 8.95298 9.52279 10.99874 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019898 B = 0.002155 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.870058 B =12987.239596 C =13451.667965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.129 3.871 3 C -0.157 4.157 4 N -0.585 5.585 5 C 0.246 3.754 6 C -0.520 4.520 7 H 0.058 0.942 8 C 0.060 3.940 9 N -0.894 5.894 10 Si 0.896 3.104 11 H -0.280 1.280 12 H -0.286 1.286 13 H -0.275 1.275 14 C 0.500 3.500 15 O -0.541 6.541 16 C 0.099 3.901 17 N -0.714 5.714 18 C 0.514 3.486 19 O -0.538 6.538 20 C -0.102 4.102 21 C -0.070 4.070 22 C -0.088 4.088 23 C -0.144 4.144 24 C 0.100 3.900 25 O -0.501 6.501 26 C -0.144 4.144 27 C -0.088 4.088 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.076 0.924 32 H 0.054 0.946 33 H 0.051 0.949 34 H 0.081 0.919 35 H 0.037 0.963 36 H 0.043 0.957 37 H 0.263 0.737 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.412 0.588 41 H 0.106 0.894 42 H 0.106 0.894 43 H 0.126 0.874 44 H 0.128 0.872 45 H 0.388 0.612 46 H 0.127 0.873 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.554 -14.610 -16.588 23.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.025 3.975 3 C -0.215 4.215 4 N -0.316 5.316 5 C 0.127 3.873 6 C -0.559 4.559 7 H 0.077 0.923 8 C -0.142 4.142 9 N -0.533 5.533 10 Si 0.724 3.276 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.200 1.200 14 C 0.285 3.715 15 O -0.420 6.420 16 C -0.029 4.029 17 N -0.370 5.370 18 C 0.300 3.700 19 O -0.414 6.414 20 C -0.142 4.142 21 C -0.071 4.071 22 C -0.106 4.106 23 C -0.162 4.162 24 C 0.056 3.944 25 O -0.310 6.310 26 C -0.162 4.162 27 C -0.107 4.107 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.094 0.906 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.100 0.900 35 H 0.055 0.945 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.110 0.890 39 H 0.109 0.891 40 H 0.250 0.750 41 H 0.124 0.876 42 H 0.124 0.876 43 H 0.144 0.856 44 H 0.146 0.854 45 H 0.243 0.757 46 H 0.145 0.855 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 6.104 -14.056 -16.837 22.767 hybrid contribution 0.996 0.357 0.916 1.400 sum 7.100 -13.699 -15.921 22.171 Atomic orbital electron populations 1.22154 0.95272 1.01906 1.02640 1.21083 0.94422 0.94414 0.87617 1.22135 1.01413 0.95457 1.02491 1.48311 1.48383 1.25816 1.09129 1.19298 0.96099 0.95080 0.76853 1.21407 1.08908 1.23477 1.02106 0.92344 1.24929 0.95791 0.97118 0.96338 1.69927 1.29488 1.43199 1.10726 0.86533 0.81950 0.81255 0.77899 1.20662 1.21161 1.19962 1.20170 0.79745 0.81570 0.89978 1.90654 1.53820 1.58353 1.39157 1.21181 0.96249 0.88734 0.96711 1.45777 1.52018 1.29003 1.10156 1.20465 0.80562 0.84768 0.84199 1.90729 1.58043 1.66851 1.25815 1.20655 1.01157 0.96452 0.95957 1.19320 0.95265 0.96976 0.95512 1.20896 0.96607 0.98586 0.94533 1.21361 1.00477 0.99178 0.95221 1.18483 0.94511 0.96619 0.84810 1.84841 1.72617 1.48771 1.24821 1.21352 0.97863 1.01847 0.95180 1.20883 0.98683 0.96568 0.94517 0.91192 0.92056 0.92856 0.90574 0.92686 0.93034 0.89957 0.94517 0.93945 0.92748 0.88994 0.89117 0.74968 0.87598 0.87562 0.85598 0.85449 0.75676 0.85462 0.85625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 9.17 37.16 0.34 -1.96 16 2 C 0.13 2.04 3.17 -67.93 -0.22 1.83 16 3 C -0.16 -2.53 8.47 37.16 0.31 -2.21 16 4 N -0.58 -11.66 2.39 -167.47 -0.40 -12.06 16 5 C 0.25 6.06 4.59 -5.20 -0.02 6.04 16 6 C -0.52 -13.95 7.83 -34.44 -0.27 -14.22 16 7 H 0.06 1.57 7.63 -52.48 -0.40 1.17 16 8 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 9 N -0.89 -25.75 13.29 55.43 0.74 -25.01 16 10 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 14 C 0.50 9.71 7.74 -10.99 -0.09 9.62 16 15 O -0.54 -12.37 15.25 5.56 0.08 -12.29 16 16 C 0.10 1.50 4.46 -5.20 -0.02 1.48 16 17 N -0.71 -9.79 5.53 -61.47 -0.34 -10.13 16 18 C 0.51 6.72 7.82 -10.98 -0.09 6.64 16 19 O -0.54 -8.90 16.03 5.56 0.09 -8.81 16 20 C -0.10 -0.94 5.83 -29.04 -0.17 -1.11 16 21 C -0.07 -0.72 4.37 -104.60 -0.46 -1.18 16 22 C -0.09 -0.88 9.69 -39.61 -0.38 -1.27 16 23 C -0.14 -1.40 9.99 -39.43 -0.39 -1.80 16 24 C 0.10 0.99 6.71 -39.21 -0.26 0.73 16 25 O -0.50 -4.31 13.50 -19.41 -0.26 -4.58 16 26 C -0.14 -1.39 9.99 -39.43 -0.39 -1.78 16 27 C -0.09 -0.87 9.69 -39.61 -0.38 -1.26 16 28 H 0.07 1.13 6.66 -51.93 -0.35 0.78 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.08 1.03 5.77 -51.93 -0.30 0.73 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 1.55 6.92 -51.93 -0.36 1.19 16 35 H 0.04 0.92 6.43 -51.93 -0.33 0.59 16 36 H 0.04 1.20 7.42 -51.92 -0.39 0.81 16 37 H 0.26 7.19 8.31 -40.82 -0.34 6.86 16 38 H 0.09 1.37 7.79 -51.93 -0.40 0.96 16 39 H 0.09 1.28 7.79 -51.93 -0.40 0.87 16 40 H 0.41 5.48 7.44 -40.82 -0.30 5.18 16 41 H 0.11 0.74 8.08 -51.93 -0.42 0.32 16 42 H 0.11 0.77 8.09 -51.93 -0.42 0.35 16 43 H 0.13 1.08 8.06 -52.48 -0.42 0.65 16 44 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 45 H 0.39 1.31 9.06 45.56 0.41 1.72 16 46 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 47 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 LS Contribution 394.02 15.07 5.94 5.94 Total: -1.00 -34.90 394.02 -7.95 -42.84 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -6.18 Total: 6.68 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -2.59 Total: 1.10 kcal Atomic # 7 Polarization: -47.20 SS G_CDS: 0.00 Total: -47.21 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: -0.09 Total: -25.67 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.90 -7.95 -42.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547320788.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.620 kcal (2) G-P(sol) polarization free energy of solvation -34.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds