Wall clock time and date at job start Tue Mar 31 2020 18:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46956 * 2 1 4 4 N 1.46499 * 109.46920 * 119.99566 * 2 1 3 5 5 C 1.46501 * 119.99997 * 300.00261 * 4 2 1 6 6 C 1.50695 * 109.47201 * 269.99984 * 5 4 2 7 7 H 1.08003 * 120.00289 * 359.97438 * 6 5 4 8 8 C 1.37882 * 120.00354 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99439 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00384 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47305 * 89.99113 * 10 8 6 12 12 H 1.48496 * 109.47365 * 209.99588 * 10 8 6 13 13 H 1.48509 * 109.46914 * 329.99420 * 10 8 6 14 14 C 1.34781 * 120.00066 * 119.99906 * 4 2 1 15 15 O 1.21277 * 119.99839 * 179.97438 * 14 4 2 16 16 C 1.50694 * 119.99636 * 0.02562 * 14 4 2 17 17 N 1.46500 * 109.46960 * 179.97438 * 16 14 4 18 18 C 1.34784 * 120.00183 * 179.97438 * 17 16 14 19 19 O 1.21280 * 119.99622 * 359.97438 * 18 17 16 20 20 C 1.50698 * 120.00106 * 179.97438 * 18 17 16 21 21 C 1.50698 * 109.47224 * 179.97438 * 20 18 17 22 22 C 1.38269 * 119.94432 * 89.99865 * 21 20 18 23 23 C 1.38137 * 120.06013 * 180.02562 * 22 21 20 24 24 C 1.38737 * 119.94162 * 359.97438 * 23 22 21 25 25 O 1.35896 * 120.05545 * 180.02562 * 24 23 22 26 26 C 1.38734 * 119.88732 * 0.27760 * 24 23 22 27 27 C 1.38140 * 119.94299 * 359.46795 * 26 24 23 28 28 H 1.09002 * 109.47501 * 300.00463 * 1 2 3 29 29 H 1.09005 * 109.47016 * 60.00201 * 1 2 3 30 30 H 1.09006 * 109.47260 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47289 * 239.99933 * 2 1 3 32 32 H 1.08998 * 109.46976 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.46877 * 299.99358 * 3 2 1 34 34 H 1.08996 * 109.47176 * 59.99864 * 3 2 1 35 35 H 1.08997 * 109.47404 * 30.00183 * 5 4 2 36 36 H 1.09011 * 109.47078 * 149.99973 * 5 4 2 37 37 H 0.97001 * 120.00066 * 180.02562 * 9 8 6 38 38 H 1.08997 * 109.47648 * 59.99679 * 16 14 4 39 39 H 1.09005 * 109.47096 * 299.99037 * 16 14 4 40 40 H 0.97000 * 120.00465 * 359.97438 * 17 16 14 41 41 H 1.08997 * 109.47005 * 59.99785 * 20 18 17 42 42 H 1.09005 * 109.46704 * 299.99776 * 20 18 17 43 43 H 1.08008 * 119.96973 * 0.02562 * 22 21 20 44 44 H 1.07997 * 120.03660 * 179.97438 * 23 22 21 45 45 H 0.96700 * 114.00170 * 90.00174 * 25 24 23 46 46 H 1.07999 * 120.02623 * 179.72382 * 26 24 23 47 47 H 1.08003 * 119.97390 * 180.23377 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.6643 -0.1899 2.5268 6 6 2.7029 0.8020 2.9830 7 1 3.5430 1.0359 2.3458 8 6 2.5814 1.4103 4.2144 9 7 1.5587 1.1252 4.9905 10 14 3.8685 2.6404 4.7797 11 1 3.4747 4.0044 4.3440 12 1 3.9712 2.6042 6.2606 13 1 5.1829 2.2906 4.1836 14 6 2.7931 -1.7864 1.0727 15 8 3.1977 -2.3577 2.0630 16 6 3.1576 -2.3010 -0.2960 17 7 4.0002 -3.4918 -0.1615 18 6 4.4495 -4.1273 -1.2619 19 8 4.1559 -3.7134 -2.3634 20 6 5.3168 -5.3519 -1.1235 21 6 5.6802 -5.8674 -2.4922 22 6 6.8245 -5.4111 -3.1201 23 6 7.1596 -5.8816 -4.3749 24 6 6.3472 -6.8132 -5.0049 25 8 6.6749 -7.2780 -6.2391 26 6 5.1968 -7.2655 -4.3750 27 6 4.8689 -6.7958 -3.1179 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 3.1299 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 0.6903 0.2975 2.4844 36 1 1.6236 -1.0225 3.2293 37 1 1.4729 1.5534 5.8567 38 1 3.7028 -1.5302 -0.8407 39 1 2.2494 -2.5579 -0.8413 40 1 4.2348 -3.8231 0.7195 41 1 4.7725 -6.1228 -0.5781 42 1 6.2252 -5.0941 -0.5789 43 1 7.4568 -4.6861 -2.6291 44 1 8.0532 -5.5246 -4.8652 45 1 7.2337 -8.0671 -6.2267 46 1 4.5604 -7.9873 -4.8652 47 1 3.9755 -7.1504 -2.6255 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000547320788.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:45 Heat of formation + Delta-G solvation = -119.402265 kcal Electronic energy + Delta-G solvation = -28137.764959 eV Core-core repulsion = 24091.559465 eV Total energy + Delta-G solvation = -4046.205494 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.41654 -40.80169 -40.00887 -37.80652 -37.62069 -35.51861 -34.87413 -33.09351 -32.47981 -31.91711 -30.53779 -28.71948 -27.99712 -27.09667 -24.71519 -23.75579 -22.93596 -22.62945 -21.39367 -19.91874 -19.33344 -18.66796 -18.59393 -17.63369 -17.26541 -17.12370 -16.85355 -16.61649 -16.48251 -16.06596 -15.72806 -15.58757 -14.89660 -14.88072 -14.65341 -14.55878 -14.34330 -14.24170 -14.04104 -13.64701 -13.35513 -13.24562 -13.15139 -13.00211 -12.85611 -12.75999 -12.54217 -12.50873 -12.49545 -12.24414 -12.11115 -11.69187 -11.53499 -11.36353 -11.05212 -10.74418 -10.59579 -10.22373 -9.90577 -9.48756 -9.43115 -8.19116 -6.30223 0.24531 0.43773 1.37244 1.39202 1.48698 1.59153 1.69089 1.90149 2.36291 2.48337 2.77891 3.11206 3.32801 3.46693 3.70700 3.90798 3.92778 4.03304 4.10000 4.22933 4.31166 4.33384 4.38537 4.39546 4.44879 4.64715 4.74347 4.80292 4.86607 4.96556 4.98802 5.03548 5.09592 5.12157 5.19582 5.29647 5.33939 5.43040 5.48250 5.55035 5.62877 5.62935 5.84123 5.92529 6.10644 6.49283 6.66995 6.78593 6.88118 7.18318 7.23920 7.41301 8.88215 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019898 B = 0.002155 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.870058 B =12987.239596 C =13451.667965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.122 3.878 3 C -0.152 4.152 4 N -0.590 5.590 5 C 0.263 3.737 6 C -0.524 4.524 7 H 0.054 0.946 8 C 0.007 3.993 9 N -0.928 5.928 10 Si 0.960 3.040 11 H -0.267 1.267 12 H -0.284 1.284 13 H -0.273 1.273 14 C 0.495 3.505 15 O -0.583 6.583 16 C 0.112 3.888 17 N -0.715 5.715 18 C 0.517 3.483 19 O -0.573 6.573 20 C -0.095 4.095 21 C -0.086 4.086 22 C -0.099 4.099 23 C -0.156 4.156 24 C 0.094 3.906 25 O -0.512 6.512 26 C -0.155 4.155 27 C -0.097 4.097 28 H 0.042 0.958 29 H 0.095 0.905 30 H 0.057 0.943 31 H 0.109 0.891 32 H 0.044 0.956 33 H 0.088 0.912 34 H 0.047 0.953 35 H 0.028 0.972 36 H -0.001 1.001 37 H 0.265 0.735 38 H 0.101 0.899 39 H 0.108 0.892 40 H 0.415 0.585 41 H 0.130 0.870 42 H 0.128 0.872 43 H 0.136 0.864 44 H 0.139 0.861 45 H 0.409 0.591 46 H 0.140 0.860 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.397 -14.780 -18.408 24.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.019 3.981 3 C -0.210 4.210 4 N -0.321 5.321 5 C 0.143 3.857 6 C -0.563 4.563 7 H 0.072 0.928 8 C -0.191 4.191 9 N -0.568 5.568 10 Si 0.785 3.215 11 H -0.193 1.193 12 H -0.210 1.210 13 H -0.198 1.198 14 C 0.282 3.718 15 O -0.464 6.464 16 C -0.015 4.015 17 N -0.370 5.370 18 C 0.305 3.695 19 O -0.452 6.452 20 C -0.135 4.135 21 C -0.086 4.086 22 C -0.117 4.117 23 C -0.174 4.174 24 C 0.050 3.950 25 O -0.325 6.325 26 C -0.174 4.174 27 C -0.115 4.115 28 H 0.062 0.938 29 H 0.114 0.886 30 H 0.076 0.924 31 H 0.127 0.873 32 H 0.063 0.937 33 H 0.107 0.893 34 H 0.066 0.934 35 H 0.046 0.954 36 H 0.017 0.983 37 H 0.074 0.926 38 H 0.119 0.881 39 H 0.126 0.874 40 H 0.253 0.747 41 H 0.148 0.852 42 H 0.146 0.854 43 H 0.154 0.846 44 H 0.157 0.843 45 H 0.268 0.732 46 H 0.158 0.842 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 6.955 -14.238 -18.693 24.506 hybrid contribution 0.725 0.356 1.402 1.618 sum 7.680 -13.882 -17.291 23.467 Atomic orbital electron populations 1.22117 0.93949 1.02380 1.02984 1.21449 0.95549 0.94246 0.86810 1.22078 1.00704 0.95609 1.02615 1.48310 1.48648 1.26395 1.08716 1.18722 0.95399 0.92901 0.78724 1.21624 1.08957 1.23575 1.02164 0.92787 1.25765 0.97757 0.99040 0.96583 1.70043 1.31207 1.44449 1.11132 0.85529 0.79271 0.79401 0.77300 1.19258 1.20961 1.19833 1.20902 0.78681 0.80844 0.91332 1.90628 1.55220 1.59508 1.41065 1.21039 0.97419 0.89604 0.93433 1.45838 1.51916 1.28605 1.10673 1.21081 0.80034 0.85182 0.83160 1.90713 1.59460 1.68018 1.26987 1.20703 1.01534 0.95097 0.96125 1.19500 0.95580 0.97423 0.96105 1.21132 0.96923 0.98817 0.94800 1.21575 1.01091 0.99345 0.95434 1.18642 0.94673 0.96683 0.85048 1.84777 1.73282 1.50131 1.24342 1.21578 0.98109 1.02275 0.95391 1.21134 0.99101 0.96539 0.94732 0.93845 0.88625 0.92357 0.87292 0.93704 0.89307 0.93355 0.95369 0.98332 0.92636 0.88070 0.87376 0.74670 0.85163 0.85408 0.84581 0.84315 0.73161 0.84189 0.84339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.21 9.17 71.98 0.66 -3.55 16 2 C 0.12 3.68 3.17 44.99 0.14 3.82 16 3 C -0.15 -4.69 8.47 71.98 0.61 -4.08 16 4 N -0.59 -23.66 2.39 -802.15 -1.91 -25.57 16 5 C 0.26 13.51 4.59 85.63 0.39 13.91 16 6 C -0.52 -28.81 7.83 25.60 0.20 -28.61 16 7 H 0.05 2.95 7.63 -2.91 -0.02 2.93 16 8 C 0.01 0.40 5.46 84.66 0.46 0.87 16 9 N -0.93 -54.81 13.29 21.45 0.28 -54.53 16 10 Si 0.96 44.13 29.54 68.60 2.03 46.16 16 11 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 12 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 13 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 14 C 0.49 19.17 7.74 87.65 0.68 19.85 16 15 O -0.58 -27.23 15.25 -3.02 -0.05 -27.27 16 16 C 0.11 3.23 4.46 85.63 0.38 3.61 16 17 N -0.72 -18.50 5.53 -466.79 -2.58 -21.08 16 18 C 0.52 12.54 7.82 87.66 0.69 13.23 16 19 O -0.57 -17.97 16.03 -3.03 -0.05 -18.01 16 20 C -0.10 -1.53 5.83 29.10 0.17 -1.36 16 21 C -0.09 -1.61 4.37 -19.85 -0.09 -1.70 16 22 C -0.10 -1.84 9.69 22.25 0.22 -1.63 16 23 C -0.16 -2.86 9.99 22.37 0.22 -2.63 16 24 C 0.09 1.74 6.71 22.51 0.15 1.89 16 25 O -0.51 -8.10 13.50 -92.38 -1.25 -9.34 16 26 C -0.16 -2.78 9.99 22.37 0.22 -2.56 16 27 C -0.10 -1.76 9.69 22.25 0.22 -1.55 16 28 H 0.04 1.40 6.66 -2.39 -0.02 1.38 16 29 H 0.10 1.92 8.14 -2.38 -0.02 1.90 16 30 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 31 H 0.11 2.61 5.77 -2.39 -0.01 2.60 16 32 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.05 1.82 6.92 -2.39 -0.02 1.80 16 35 H 0.03 1.49 6.43 -2.39 -0.02 1.47 16 36 H 0.00 -0.08 7.42 -2.38 -0.02 -0.10 16 37 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 38 H 0.10 2.77 7.79 -2.39 -0.02 2.75 16 39 H 0.11 2.77 7.79 -2.38 -0.02 2.75 16 40 H 0.42 10.58 7.44 -92.71 -0.69 9.89 16 41 H 0.13 1.46 8.08 -2.39 -0.02 1.44 16 42 H 0.13 1.51 8.09 -2.38 -0.02 1.49 16 43 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16 44 H 0.14 2.08 8.06 -2.91 -0.02 2.05 16 45 H 0.41 2.12 9.06 -74.06 -0.67 1.45 16 46 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 47 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 Total: -1.00 -77.60 394.02 1.44 -76.15 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: -0.36 Total: 23.98 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: 5.33 Total: 9.51 kcal Atomic # 7 Polarization: -96.97 SS G_CDS: -4.21 Total: -101.18 kcal Atomic # 8 Polarization: -53.29 SS G_CDS: -1.34 Total: -54.63 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -77.60 1.44 -76.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547320788.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.247 kcal (2) G-P(sol) polarization free energy of solvation -77.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds