Wall clock time and date at job start Tue Mar 31 2020 17:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42894 * 113.99884 * 2 1 4 4 C 1.53005 * 109.46996 * 179.97438 * 3 2 1 5 5 N 1.46899 * 109.47000 * 65.00067 * 4 3 2 6 6 C 1.47846 * 110.99771 * 290.83993 * 5 4 3 7 7 C 1.54902 * 104.79512 * 213.63389 * 6 5 4 8 8 C 1.55143 * 101.65461 * 37.07663 * 7 6 5 9 9 H 1.08998 * 110.85430 * 82.78866 * 8 7 6 10 10 N 1.46494 * 110.70659 * 205.96466 * 8 7 6 11 11 S 1.65604 * 119.99590 * 258.59641 * 10 8 7 12 12 O 1.42100 * 104.27446 * 181.07429 * 11 10 8 13 13 O 1.42105 * 104.27746 * 308.92612 * 11 10 8 14 14 C 1.81394 * 104.45276 * 65.00001 * 11 10 8 15 15 C 1.52997 * 109.47220 * 180.02562 * 14 11 10 16 16 C 1.53005 * 109.46889 * 299.99580 * 15 14 11 17 17 C 1.53000 * 109.47331 * 59.99914 * 15 14 11 18 18 C 1.50701 * 109.47010 * 180.02562 * 15 14 11 19 19 H 1.07998 * 120.00106 * 357.68805 * 18 15 14 20 20 C 1.37881 * 120.00140 * 177.69470 * 18 15 14 21 21 N 1.31521 * 119.99635 * 6.57966 * 20 18 15 22 22 Si 1.86796 * 120.00152 * 186.58013 * 20 18 15 23 23 H 1.48499 * 109.47210 * 84.99330 * 22 20 18 24 24 H 1.48504 * 109.46962 * 204.99416 * 22 20 18 25 25 H 1.48501 * 109.47239 * 324.98979 * 22 20 18 26 26 C 1.47444 * 111.00099 * 170.00122 * 5 4 3 27 27 H 1.09005 * 109.47363 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47633 * 300.00505 * 1 2 3 29 29 H 1.09002 * 109.47292 * 60.00162 * 1 2 3 30 30 H 1.09001 * 109.47186 * 59.99803 * 3 2 1 31 31 H 1.08992 * 109.47530 * 299.99681 * 3 2 1 32 32 H 1.09006 * 109.46994 * 184.99867 * 4 3 2 33 33 H 1.08999 * 109.46886 * 304.99794 * 4 3 2 34 34 H 1.08991 * 110.37663 * 332.47099 * 6 5 4 35 35 H 1.09007 * 110.36855 * 94.80927 * 6 5 4 36 36 H 1.08999 * 110.99417 * 278.97992 * 7 6 5 37 37 H 1.09008 * 110.98930 * 155.16617 * 7 6 5 38 38 H 0.96992 * 120.00311 * 78.59381 * 10 8 7 39 39 H 1.09003 * 109.46704 * 300.00281 * 14 11 10 40 40 H 1.09000 * 109.47225 * 60.00010 * 14 11 10 41 41 H 1.08996 * 109.46540 * 66.67395 * 16 15 14 42 42 H 1.09000 * 109.46566 * 186.67100 * 16 15 14 43 43 H 1.08992 * 109.47326 * 306.67089 * 16 15 14 44 44 H 1.08995 * 109.46837 * 59.99897 * 17 15 14 45 45 H 1.08996 * 109.47087 * 179.97438 * 17 15 14 46 46 H 1.08998 * 109.46678 * 299.99996 * 17 15 14 47 47 H 0.96994 * 119.99331 * 180.02562 * 21 20 18 48 48 H 1.08995 * 109.88635 * 242.66703 * 26 5 4 49 49 H 1.09004 * 109.88754 * 3.85157 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9778 0.5622 -1.2543 6 6 3.5779 -0.8600 -1.3101 7 6 4.7186 -1.5614 -2.0887 8 6 5.9663 -0.7973 -1.5727 9 1 6.3035 -1.2039 -0.6192 10 7 7.0455 -0.8393 -2.5625 11 16 8.3061 -1.8956 -2.3686 12 8 9.1519 -1.6397 -3.4815 13 8 8.7544 -1.6662 -1.0398 14 6 7.5471 -3.5370 -2.5100 15 6 8.6230 -4.6123 -2.3458 16 6 9.6823 -4.4446 -3.4371 17 6 9.2799 -4.4708 -0.9713 18 6 7.9925 -5.9760 -2.4639 19 1 6.9252 -6.0674 -2.6012 20 6 8.7783 -7.1070 -2.3965 21 7 10.0556 -7.0036 -2.1005 22 14 8.0286 -8.7860 -2.7254 23 1 8.0247 -9.0486 -4.1870 24 1 8.8303 -9.8295 -2.0371 25 1 6.6349 -8.8148 -2.2135 26 6 5.4431 0.6438 -1.3967 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.6885 1.8463 0.8900 31 1 1.6886 1.8463 -0.8899 32 1 3.9784 2.1765 0.0902 33 1 3.8507 0.5685 0.8427 34 1 3.4965 -1.2711 -0.3039 35 1 2.6329 -0.9678 -1.8425 36 1 4.5966 -1.4290 -3.1637 37 1 4.7743 -2.6192 -1.8311 38 1 7.0217 -0.2484 -3.3313 39 1 6.7927 -3.6566 -1.7324 40 1 7.0788 -3.6377 -3.4891 41 1 10.2198 -3.5093 -3.2809 42 1 10.3834 -5.2781 -3.3940 43 1 9.1984 -4.4269 -4.4135 44 1 8.5252 -4.5903 -0.1940 45 1 10.0461 -5.2372 -0.8541 46 1 9.7360 -3.4845 -0.8864 47 1 10.6083 -7.7992 -2.0535 48 1 5.6978 1.2404 -2.2726 49 1 5.8784 1.0897 -0.5023 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000556301350.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:27 Heat of formation + Delta-G solvation = -112.343261 kcal Electronic energy + Delta-G solvation = -28520.904036 eV Core-core repulsion = 24610.448595 eV Total energy + Delta-G solvation = -3910.455441 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.55972 -37.88041 -36.50881 -36.26975 -35.31032 -34.69184 -31.70428 -31.45309 -29.14909 -27.44463 -26.61643 -26.36709 -25.71766 -25.22184 -22.86636 -21.25409 -20.87470 -19.64347 -18.86840 -17.41905 -16.88136 -16.78436 -16.13729 -16.00940 -15.66264 -15.30057 -14.99840 -14.79141 -14.73321 -14.22199 -13.88696 -13.51191 -13.11462 -13.08430 -12.90092 -12.50875 -12.43761 -12.23807 -12.06981 -12.01057 -11.84379 -11.71128 -11.44081 -11.37544 -11.11265 -11.04113 -11.01197 -10.89959 -10.84904 -10.70117 -10.37614 -10.30460 -10.08313 -9.94857 -9.66170 -9.61980 -9.21757 -8.70713 -8.49984 -8.37757 -6.03930 -4.15338 0.87681 3.17503 3.26484 3.33446 3.34988 3.50519 3.77936 4.30130 4.38900 4.42276 4.57492 4.77443 4.79713 4.91980 4.97602 4.99193 5.07438 5.14002 5.20566 5.25498 5.29065 5.32575 5.41955 5.43668 5.49910 5.61506 5.67972 5.76920 5.86203 5.98469 6.05388 6.29281 6.39156 6.69317 6.75192 6.78922 6.83690 6.89266 6.91371 7.03192 7.15152 7.31466 7.48944 7.67925 7.97868 8.10099 8.33796 8.83095 9.49820 10.97244 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014317 B = 0.003170 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.305647 B = 8829.511182 C =10261.493574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.386 6.386 3 C 0.065 3.935 4 C 0.048 3.952 5 N -0.526 5.526 6 C 0.057 3.943 7 C -0.157 4.157 8 C 0.129 3.871 9 H 0.100 0.900 10 N -1.119 6.119 11 S 2.592 3.408 12 O -0.965 6.965 13 O -0.966 6.966 14 C -0.580 4.580 15 C 0.083 3.917 16 C -0.161 4.161 17 C -0.164 4.164 18 C -0.502 4.502 19 H 0.059 0.941 20 C 0.065 3.935 21 N -0.882 5.882 22 Si 0.895 3.105 23 H -0.279 1.279 24 H -0.286 1.286 25 H -0.275 1.275 26 C 0.040 3.960 27 H 0.084 0.916 28 H 0.038 0.962 29 H 0.040 0.960 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.088 0.912 33 H 0.047 0.953 34 H 0.056 0.944 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.412 0.588 39 H 0.116 0.884 40 H 0.120 0.880 41 H 0.026 0.974 42 H 0.094 0.906 43 H 0.035 0.965 44 H 0.035 0.965 45 H 0.097 0.903 46 H 0.027 0.973 47 H 0.262 0.738 48 H 0.085 0.915 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.915 15.850 2.868 22.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.305 6.305 3 C -0.012 4.012 4 C -0.080 4.080 5 N -0.251 5.251 6 C -0.071 4.071 7 C -0.197 4.197 8 C 0.020 3.980 9 H 0.118 0.882 10 N -0.874 5.874 11 S 2.690 3.310 12 O -0.956 6.956 13 O -0.956 6.956 14 C -0.714 4.714 15 C 0.080 3.920 16 C -0.219 4.219 17 C -0.222 4.222 18 C -0.542 4.542 19 H 0.077 0.923 20 C -0.137 4.137 21 N -0.520 5.520 22 Si 0.723 3.277 23 H -0.205 1.205 24 H -0.212 1.212 25 H -0.200 1.200 26 C -0.090 4.090 27 H 0.103 0.897 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.106 0.894 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.246 0.754 39 H 0.135 0.865 40 H 0.138 0.862 41 H 0.045 0.955 42 H 0.112 0.888 43 H 0.054 0.946 44 H 0.054 0.946 45 H 0.116 0.884 46 H 0.045 0.955 47 H 0.073 0.927 48 H 0.103 0.897 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.950 16.033 2.823 22.103 hybrid contribution -0.923 -1.227 0.062 1.537 sum -15.874 14.806 2.885 21.898 Atomic orbital electron populations 1.22710 0.81335 1.02713 0.99718 1.87957 1.19427 1.27767 1.95346 1.22553 0.93308 0.85041 1.00268 1.22406 0.93864 1.00306 0.91468 1.63642 1.11237 1.16587 1.33684 1.22976 0.98230 0.85943 0.99914 1.23411 0.94251 1.00277 1.01722 1.21977 0.87306 0.96781 0.91986 0.88184 1.55834 1.40652 1.56086 1.34847 1.05641 0.73903 0.77035 0.74416 1.93558 1.63549 1.84635 1.53816 1.93540 1.78800 1.84668 1.38548 1.30561 1.12349 1.18610 1.09873 1.17922 0.88994 0.91730 0.93321 1.22213 1.00607 1.01317 0.97762 1.22312 1.02160 1.00710 0.97018 1.20939 0.93788 0.89087 1.50353 0.92267 1.24940 0.94980 0.99067 0.94742 1.69816 1.05515 1.29198 1.47520 0.86565 0.79138 0.83562 0.78456 1.20542 1.21218 1.19997 1.23066 0.87279 0.96173 1.02472 0.89704 0.94386 0.94143 0.93119 0.92405 0.89358 0.93468 0.92573 0.89601 0.89765 0.89821 0.75424 0.86542 0.86191 0.95541 0.88758 0.94552 0.94558 0.88415 0.95452 0.92721 0.89655 0.91887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.39 -3.55 8.04 -35.23 -0.28 -3.83 16 3 C 0.07 0.50 6.23 37.16 0.23 0.73 16 4 C 0.05 0.41 5.13 -3.82 -0.02 0.39 16 5 N -0.53 -5.30 5.16 -231.25 -1.19 -6.49 16 6 C 0.06 0.60 5.07 -2.30 -0.01 0.59 16 7 C -0.16 -1.75 6.76 -24.59 -0.17 -1.91 16 8 C 0.13 1.57 3.51 -66.11 -0.23 1.34 16 9 H 0.10 1.31 7.56 -51.93 -0.39 0.91 16 10 N -1.12 -15.08 5.47 -3.34 -0.02 -15.09 16 11 S 2.59 47.75 4.47 -107.50 -0.48 47.27 16 12 O -0.97 -20.28 15.84 -57.54 -0.91 -21.19 16 13 O -0.97 -20.25 15.07 -57.54 -0.87 -21.11 16 14 C -0.58 -11.20 5.01 37.16 0.19 -11.01 16 15 C 0.08 1.99 0.52 -155.66 -0.08 1.91 16 16 C -0.16 -3.98 7.58 37.16 0.28 -3.70 16 17 C -0.16 -4.06 7.80 37.16 0.29 -3.77 16 18 C -0.50 -13.14 8.01 -34.44 -0.28 -13.41 16 19 H 0.06 1.50 7.75 -52.49 -0.41 1.10 16 20 C 0.06 1.71 5.09 -17.82 -0.09 1.62 16 21 N -0.88 -24.10 9.39 55.43 0.52 -23.58 16 22 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 26 C 0.04 0.41 6.61 -2.84 -0.02 0.39 16 27 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.04 0.21 8.14 -51.93 -0.42 -0.22 16 29 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.09 0.61 8.03 -51.93 -0.42 0.19 16 33 H 0.05 0.43 7.85 -51.93 -0.41 0.02 16 34 H 0.06 0.62 7.21 -51.93 -0.37 0.25 16 35 H 0.09 0.92 7.60 -51.92 -0.39 0.52 16 36 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.08 0.94 7.66 -51.92 -0.40 0.54 16 38 H 0.41 4.70 8.61 -34.47 -0.30 4.41 16 39 H 0.12 2.03 7.66 -51.92 -0.40 1.63 16 40 H 0.12 2.11 8.14 -51.92 -0.42 1.68 16 41 H 0.03 0.62 5.96 -51.93 -0.31 0.31 16 42 H 0.09 2.50 5.99 -51.93 -0.31 2.19 16 43 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.10 2.61 6.01 -51.93 -0.31 2.29 16 46 H 0.03 0.64 5.46 -51.93 -0.28 0.36 16 47 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 48 H 0.09 0.84 7.82 -51.93 -0.41 0.43 16 49 H 0.06 0.62 7.55 -51.93 -0.39 0.23 16 LS Contribution 382.94 15.07 5.77 5.77 Total: -1.00 -32.02 382.94 -9.72 -41.74 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -8.44 Total: 6.45 kcal Atomic # 6 Polarization: -26.71 SS G_CDS: 1.21 Total: -25.51 kcal Atomic # 7 Polarization: -44.48 SS G_CDS: -0.69 Total: -45.17 kcal Atomic # 8 Polarization: -44.07 SS G_CDS: -2.06 Total: -46.14 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: 47.75 SS G_CDS: -0.48 Total: 47.27 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.02 -9.72 -41.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000556301350.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.603 kcal (2) G-P(sol) polarization free energy of solvation -32.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds