Wall clock time and date at job start Tue Mar 31 2020 17:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42894 * 113.99884 * 2 1 4 4 C 1.53005 * 109.46996 * 179.97438 * 3 2 1 5 5 N 1.46899 * 109.47000 * 65.00067 * 4 3 2 6 6 C 1.47846 * 110.99771 * 290.83993 * 5 4 3 7 7 C 1.54902 * 104.79512 * 213.63389 * 6 5 4 8 8 C 1.55143 * 101.65461 * 37.07663 * 7 6 5 9 9 H 1.08998 * 110.85430 * 82.78866 * 8 7 6 10 10 N 1.46494 * 110.70659 * 205.96466 * 8 7 6 11 11 S 1.65604 * 119.99590 * 258.59641 * 10 8 7 12 12 O 1.42100 * 104.27446 * 181.07429 * 11 10 8 13 13 O 1.42105 * 104.27746 * 308.92612 * 11 10 8 14 14 C 1.81394 * 104.45276 * 65.00001 * 11 10 8 15 15 C 1.52997 * 109.47220 * 180.02562 * 14 11 10 16 16 C 1.53005 * 109.46889 * 299.99580 * 15 14 11 17 17 C 1.53000 * 109.47331 * 59.99914 * 15 14 11 18 18 C 1.50701 * 109.47010 * 180.02562 * 15 14 11 19 19 H 1.07998 * 120.00106 * 357.68805 * 18 15 14 20 20 C 1.37881 * 120.00140 * 177.69470 * 18 15 14 21 21 N 1.31521 * 119.99635 * 6.57966 * 20 18 15 22 22 Si 1.86796 * 120.00152 * 186.58013 * 20 18 15 23 23 H 1.48499 * 109.47210 * 84.99330 * 22 20 18 24 24 H 1.48504 * 109.46962 * 204.99416 * 22 20 18 25 25 H 1.48501 * 109.47239 * 324.98979 * 22 20 18 26 26 C 1.47444 * 111.00099 * 170.00122 * 5 4 3 27 27 H 1.09005 * 109.47363 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47633 * 300.00505 * 1 2 3 29 29 H 1.09002 * 109.47292 * 60.00162 * 1 2 3 30 30 H 1.09001 * 109.47186 * 59.99803 * 3 2 1 31 31 H 1.08992 * 109.47530 * 299.99681 * 3 2 1 32 32 H 1.09006 * 109.46994 * 184.99867 * 4 3 2 33 33 H 1.08999 * 109.46886 * 304.99794 * 4 3 2 34 34 H 1.08991 * 110.37663 * 332.47099 * 6 5 4 35 35 H 1.09007 * 110.36855 * 94.80927 * 6 5 4 36 36 H 1.08999 * 110.99417 * 278.97992 * 7 6 5 37 37 H 1.09008 * 110.98930 * 155.16617 * 7 6 5 38 38 H 0.96992 * 120.00311 * 78.59381 * 10 8 7 39 39 H 1.09003 * 109.46704 * 300.00281 * 14 11 10 40 40 H 1.09000 * 109.47225 * 60.00010 * 14 11 10 41 41 H 1.08996 * 109.46540 * 66.67395 * 16 15 14 42 42 H 1.09000 * 109.46566 * 186.67100 * 16 15 14 43 43 H 1.08992 * 109.47326 * 306.67089 * 16 15 14 44 44 H 1.08995 * 109.46837 * 59.99897 * 17 15 14 45 45 H 1.08996 * 109.47087 * 179.97438 * 17 15 14 46 46 H 1.08998 * 109.46678 * 299.99996 * 17 15 14 47 47 H 0.96994 * 119.99331 * 180.02562 * 21 20 18 48 48 H 1.08995 * 109.88635 * 242.66703 * 26 5 4 49 49 H 1.09004 * 109.88754 * 3.85157 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9778 0.5622 -1.2543 6 6 3.5779 -0.8600 -1.3101 7 6 4.7186 -1.5614 -2.0887 8 6 5.9663 -0.7973 -1.5727 9 1 6.3035 -1.2039 -0.6192 10 7 7.0455 -0.8393 -2.5625 11 16 8.3061 -1.8956 -2.3686 12 8 9.1519 -1.6397 -3.4815 13 8 8.7544 -1.6662 -1.0398 14 6 7.5471 -3.5370 -2.5100 15 6 8.6230 -4.6123 -2.3458 16 6 9.6823 -4.4446 -3.4371 17 6 9.2799 -4.4708 -0.9713 18 6 7.9925 -5.9760 -2.4639 19 1 6.9252 -6.0674 -2.6012 20 6 8.7783 -7.1070 -2.3965 21 7 10.0556 -7.0036 -2.1005 22 14 8.0286 -8.7860 -2.7254 23 1 8.0247 -9.0486 -4.1870 24 1 8.8303 -9.8295 -2.0371 25 1 6.6349 -8.8148 -2.2135 26 6 5.4431 0.6438 -1.3967 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.6885 1.8463 0.8900 31 1 1.6886 1.8463 -0.8899 32 1 3.9784 2.1765 0.0902 33 1 3.8507 0.5685 0.8427 34 1 3.4965 -1.2711 -0.3039 35 1 2.6329 -0.9678 -1.8425 36 1 4.5966 -1.4290 -3.1637 37 1 4.7743 -2.6192 -1.8311 38 1 7.0217 -0.2484 -3.3313 39 1 6.7927 -3.6566 -1.7324 40 1 7.0788 -3.6377 -3.4891 41 1 10.2198 -3.5093 -3.2809 42 1 10.3834 -5.2781 -3.3940 43 1 9.1984 -4.4269 -4.4135 44 1 8.5252 -4.5903 -0.1940 45 1 10.0461 -5.2372 -0.8541 46 1 9.7360 -3.4845 -0.8864 47 1 10.6083 -7.7992 -2.0535 48 1 5.6978 1.2404 -2.2726 49 1 5.8784 1.0897 -0.5023 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000556301350.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:26 Heat of formation + Delta-G solvation = -136.313996 kcal Electronic energy + Delta-G solvation = -28521.943485 eV Core-core repulsion = 24610.448595 eV Total energy + Delta-G solvation = -3911.494890 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.36408 -38.54978 -38.12703 -38.07285 -36.90360 -35.66580 -33.64236 -32.31171 -29.91751 -28.39606 -28.17595 -27.69469 -27.24061 -26.93853 -23.55717 -22.19483 -21.68968 -21.34938 -20.37354 -18.87878 -17.88275 -17.73757 -17.41472 -17.04801 -16.89518 -16.70139 -16.47617 -16.05084 -15.60002 -15.14775 -14.99208 -14.70368 -14.61941 -14.42727 -14.28731 -13.80560 -13.74361 -13.50379 -13.25413 -13.10918 -13.03936 -12.86482 -12.79177 -12.67661 -12.59814 -12.47961 -12.40267 -12.21974 -12.17388 -12.09805 -11.89899 -11.85089 -11.63670 -11.56777 -11.35927 -10.70542 -10.51818 -10.39030 -10.29003 -9.28523 -8.03235 -6.21090 -0.60791 1.44837 1.46600 1.54411 1.86658 2.44715 2.85377 2.96696 3.01314 3.18858 3.29995 3.59599 3.73180 3.96518 4.01575 4.13001 4.18146 4.34072 4.36362 4.45248 4.49071 4.53102 4.59344 4.60693 4.66293 4.69995 4.76461 4.84784 4.87090 4.92879 4.93637 4.98160 5.04522 5.07886 5.11974 5.23362 5.35791 5.39420 5.49632 5.65277 5.96648 5.97482 6.10032 6.11734 6.14876 6.33288 6.35151 6.83660 7.46975 8.96584 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014317 B = 0.003170 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.305647 B = 8829.511182 C =10261.493574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.410 6.410 3 C 0.066 3.934 4 C 0.044 3.956 5 N -0.528 5.528 6 C 0.064 3.936 7 C -0.156 4.156 8 C 0.120 3.880 9 H 0.091 0.909 10 N -1.100 6.100 11 S 2.613 3.387 12 O -0.992 6.992 13 O -0.992 6.992 14 C -0.584 4.584 15 C 0.071 3.929 16 C -0.158 4.158 17 C -0.161 4.161 18 C -0.517 4.517 19 H 0.064 0.936 20 C 0.018 3.982 21 N -0.907 5.907 22 Si 0.953 3.047 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.267 1.267 26 C 0.042 3.958 27 H 0.088 0.912 28 H 0.048 0.952 29 H 0.046 0.954 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.105 0.895 33 H 0.039 0.961 34 H 0.048 0.952 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.425 0.575 39 H 0.134 0.866 40 H 0.139 0.861 41 H 0.028 0.972 42 H 0.070 0.930 43 H 0.043 0.957 44 H 0.038 0.962 45 H 0.073 0.927 46 H 0.031 0.969 47 H 0.261 0.739 48 H 0.095 0.905 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.009 16.859 2.612 24.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.329 6.329 3 C -0.011 4.011 4 C -0.084 4.084 5 N -0.253 5.253 6 C -0.064 4.064 7 C -0.195 4.195 8 C 0.012 3.988 9 H 0.109 0.891 10 N -0.860 5.860 11 S 2.710 3.290 12 O -0.982 6.982 13 O -0.982 6.982 14 C -0.716 4.716 15 C 0.069 3.931 16 C -0.216 4.216 17 C -0.218 4.218 18 C -0.556 4.556 19 H 0.082 0.918 20 C -0.181 4.181 21 N -0.546 5.546 22 Si 0.779 3.221 23 H -0.202 1.202 24 H -0.214 1.214 25 H -0.192 1.192 26 C -0.087 4.087 27 H 0.106 0.894 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.123 0.877 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.104 0.896 36 H 0.110 0.890 37 H 0.100 0.900 38 H 0.262 0.738 39 H 0.152 0.848 40 H 0.157 0.843 41 H 0.047 0.953 42 H 0.089 0.911 43 H 0.062 0.938 44 H 0.058 0.942 45 H 0.091 0.909 46 H 0.050 0.950 47 H 0.071 0.929 48 H 0.113 0.887 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.057 17.047 2.560 24.250 hybrid contribution -0.319 -1.474 0.169 1.518 sum -17.375 15.573 2.729 23.491 Atomic orbital electron populations 1.22822 0.80189 1.03259 1.00518 1.87919 1.20803 1.28683 1.95523 1.22593 0.92657 0.84729 1.01113 1.22531 0.94645 1.00855 0.90379 1.63687 1.10789 1.16145 1.34689 1.22877 0.97926 0.86261 0.99323 1.23417 0.93782 1.00103 1.02228 1.22166 0.87018 0.98479 0.91166 0.89143 1.55326 1.39971 1.54932 1.35735 1.04730 0.74108 0.76898 0.73256 1.93516 1.65194 1.84960 1.54562 1.93504 1.79826 1.84972 1.39916 1.30492 1.11410 1.17989 1.11733 1.17902 0.90008 0.92814 0.92395 1.22158 1.00559 1.00357 0.98561 1.22245 1.01658 1.00043 0.97902 1.21297 0.94136 0.90219 1.49978 0.91766 1.25673 0.95379 1.02360 0.94732 1.69956 1.06573 1.29817 1.48252 0.85646 0.78588 0.79630 0.78209 1.20249 1.21424 1.19178 1.23075 0.87534 0.94872 1.03264 0.89380 0.93346 0.93545 0.91503 0.92257 0.87661 0.94264 0.93353 0.89620 0.89015 0.90017 0.73812 0.84770 0.84299 0.95325 0.91149 0.93819 0.94248 0.90866 0.95020 0.92929 0.88694 0.91251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 113.37 1.25 1.57 16 2 O -0.41 -6.90 8.04 -148.98 -1.20 -8.10 16 3 C 0.07 0.88 6.23 71.98 0.45 1.33 16 4 C 0.04 0.66 5.13 86.31 0.44 1.10 16 5 N -0.53 -9.51 5.16 -885.53 -4.57 -14.08 16 6 C 0.06 1.24 5.07 86.77 0.44 1.68 16 7 C -0.16 -3.16 6.76 31.98 0.22 -2.94 16 8 C 0.12 2.71 3.51 46.17 0.16 2.87 16 9 H 0.09 2.24 7.56 -2.39 -0.02 2.23 16 10 N -1.10 -27.49 5.47 -164.49 -0.90 -28.39 16 11 S 2.61 93.34 4.47 -56.49 -0.25 93.09 16 12 O -0.99 -40.78 15.84 -127.65 -2.02 -42.80 16 13 O -0.99 -40.96 15.07 -127.65 -1.92 -42.89 16 14 C -0.58 -21.73 5.01 71.98 0.36 -21.37 16 15 C 0.07 3.40 0.52 -52.93 -0.03 3.37 16 16 C -0.16 -7.86 7.58 71.98 0.55 -7.32 16 17 C -0.16 -8.01 7.80 71.98 0.56 -7.44 16 18 C -0.52 -26.76 8.01 25.60 0.20 -26.56 16 19 H 0.06 3.18 7.75 -2.91 -0.02 3.15 16 20 C 0.02 0.95 5.09 84.65 0.43 1.38 16 21 N -0.91 -50.30 9.39 21.45 0.20 -50.10 16 22 Si 0.95 42.01 29.54 68.60 2.03 44.04 16 23 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 24 H -0.29 -12.69 7.11 99.48 0.71 -11.99 16 25 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 26 C 0.04 0.78 6.61 86.65 0.57 1.35 16 27 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 28 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.11 1.19 8.03 -2.38 -0.02 1.17 16 33 H 0.04 0.65 7.85 -2.39 -0.02 0.64 16 34 H 0.05 1.02 7.21 -2.39 -0.02 1.00 16 35 H 0.09 1.68 7.60 -2.38 -0.02 1.67 16 36 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.08 1.69 7.66 -2.38 -0.02 1.67 16 38 H 0.43 8.68 8.61 -96.75 -0.83 7.85 16 39 H 0.13 4.46 7.66 -2.39 -0.02 4.44 16 40 H 0.14 4.59 8.14 -2.39 -0.02 4.57 16 41 H 0.03 1.36 5.96 -2.39 -0.01 1.34 16 42 H 0.07 3.81 5.99 -2.39 -0.01 3.80 16 43 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 44 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.07 4.00 6.01 -2.39 -0.01 3.98 16 46 H 0.03 1.50 5.46 -2.39 -0.01 1.49 16 47 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 48 H 0.09 1.59 7.82 -2.39 -0.02 1.57 16 49 H 0.07 1.21 7.55 -2.38 -0.02 1.19 16 Total: -1.00 -67.59 382.94 -2.93 -70.52 By element: Atomic # 1 Polarization: 29.58 SS G_CDS: 0.10 Total: 29.68 kcal Atomic # 6 Polarization: -56.58 SS G_CDS: 5.61 Total: -50.97 kcal Atomic # 7 Polarization: -87.30 SS G_CDS: -5.27 Total: -92.57 kcal Atomic # 8 Polarization: -88.64 SS G_CDS: -5.14 Total: -93.78 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Atomic # 16 Polarization: 93.34 SS G_CDS: -0.25 Total: 93.09 kcal Total: -67.59 -2.93 -70.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000556301350.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.793 kcal (2) G-P(sol) polarization free energy of solvation -67.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds