Wall clock time and date at job start Tue Mar 31 2020 17:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42895 * 114.00106 * 2 1 4 4 C 1.53003 * 109.47007 * 180.02562 * 3 2 1 5 5 N 1.46897 * 109.47175 * 65.00226 * 4 3 2 6 6 C 1.48813 * 111.18681 * 52.66416 * 5 4 3 7 7 C 1.54933 * 103.35205 * 159.50572 * 6 5 4 8 8 C 1.54594 * 102.91997 * 322.69117 * 7 6 5 9 9 H 1.09011 * 110.39051 * 262.99616 * 8 7 6 10 10 N 1.46495 * 110.31120 * 140.87493 * 8 7 6 11 11 S 1.65604 * 120.00142 * 99.28216 * 10 8 7 12 12 O 1.42102 * 104.27531 * 181.07217 * 11 10 8 13 13 O 1.42102 * 104.27651 * 308.92603 * 11 10 8 14 14 C 1.81395 * 104.45051 * 64.99932 * 11 10 8 15 15 C 1.52997 * 109.47022 * 179.97438 * 14 11 10 16 16 C 1.52999 * 109.47744 * 300.00062 * 15 14 11 17 17 C 1.53000 * 109.47108 * 60.00464 * 15 14 11 18 18 C 1.50697 * 109.47038 * 180.02562 * 15 14 11 19 19 H 1.08002 * 120.00347 * 0.02562 * 18 15 14 20 20 C 1.37880 * 120.00281 * 180.02562 * 18 15 14 21 21 N 1.31512 * 119.99742 * 359.97438 * 20 18 15 22 22 Si 1.86799 * 120.00341 * 180.02562 * 20 18 15 23 23 H 1.48498 * 109.47473 * 89.99491 * 22 20 18 24 24 H 1.48500 * 109.46830 * 209.99877 * 22 20 18 25 25 H 1.48501 * 109.46747 * 329.99292 * 22 20 18 26 26 C 1.47905 * 111.00050 * 169.99751 * 5 4 3 27 27 H 1.09000 * 109.47320 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46728 * 299.99310 * 1 2 3 29 29 H 1.09000 * 109.47382 * 59.99383 * 1 2 3 30 30 H 1.08998 * 109.47230 * 60.00476 * 3 2 1 31 31 H 1.08998 * 109.47225 * 300.00441 * 3 2 1 32 32 H 1.09000 * 109.47560 * 304.99899 * 4 3 2 33 33 H 1.09011 * 109.47014 * 185.00001 * 4 3 2 34 34 H 1.08998 * 110.51915 * 41.07024 * 6 5 4 35 35 H 1.09009 * 110.83927 * 278.09443 * 6 5 4 36 36 H 1.08999 * 110.72416 * 204.32980 * 7 6 5 37 37 H 1.08999 * 110.72531 * 81.04521 * 7 6 5 38 38 H 0.97001 * 119.99865 * 279.28577 * 10 8 7 39 39 H 1.08993 * 109.47319 * 300.00320 * 14 11 10 40 40 H 1.08997 * 109.47138 * 60.00297 * 14 11 10 41 41 H 1.09006 * 109.46487 * 59.99626 * 16 15 14 42 42 H 1.08994 * 109.47393 * 179.97438 * 16 15 14 43 43 H 1.09000 * 109.46889 * 300.00385 * 16 15 14 44 44 H 1.09001 * 109.47275 * 59.99667 * 17 15 14 45 45 H 1.09004 * 109.47596 * 179.97438 * 17 15 14 46 46 H 1.09004 * 109.47032 * 299.99703 * 17 15 14 47 47 H 0.97002 * 120.00266 * 180.02562 * 21 20 18 48 48 H 1.09002 * 109.91668 * 94.80258 * 26 5 4 49 49 H 1.09002 * 109.91761 * 333.70433 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9769 0.5627 -1.2562 6 6 3.4169 1.2764 -2.4358 7 6 4.3652 0.8612 -3.5885 8 6 5.7487 0.8199 -2.9000 9 1 6.2862 1.7527 -3.0711 10 7 6.5305 -0.3149 -3.3972 11 16 7.6818 -0.0794 -4.5640 12 8 8.2035 -1.3784 -4.8087 13 8 7.0047 0.6421 -5.5839 14 6 8.9291 0.9673 -3.7646 15 6 10.0601 1.2583 -4.7530 16 6 10.7047 -0.0578 -5.1926 17 6 9.4945 1.9828 -5.9762 18 6 11.0966 2.1274 -4.0886 19 1 10.9623 2.4405 -3.0638 20 6 12.2164 2.5229 -4.7892 21 7 12.3801 2.1412 -6.0370 22 14 13.5015 3.5995 -3.9654 23 1 14.5200 2.7408 -3.3093 24 1 14.1585 4.4549 -4.9861 25 1 12.8476 4.4589 -2.9461 26 6 5.4466 0.6446 -1.4002 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.6887 1.8463 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 3.8515 0.5681 0.8409 33 1 3.9786 2.1765 0.0889 34 1 3.4491 2.3548 -2.2806 35 1 2.3974 0.9486 -2.6394 36 1 4.3528 1.6051 -4.3851 37 1 4.0966 -0.1224 -3.9737 38 1 6.3737 -1.2042 -3.0430 39 1 8.4699 1.9047 -3.4510 40 1 9.3323 0.4510 -2.8934 41 1 9.9551 -0.6868 -5.6730 42 1 11.5101 0.1496 -5.8971 43 1 11.1076 -0.5739 -4.3211 44 1 9.0353 2.9204 -5.6631 45 1 10.3003 2.1906 -6.6803 46 1 8.7450 1.3538 -6.4566 47 1 13.1681 2.4191 -6.5298 48 1 5.9073 -0.2726 -1.0333 49 1 5.8273 1.5001 -0.8422 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000556301351.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:30 Heat of formation + Delta-G solvation = -108.736354 kcal Electronic energy + Delta-G solvation = -28286.578406 eV Core-core repulsion = 24376.279372 eV Total energy + Delta-G solvation = -3910.299034 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.58441 -37.90120 -36.49361 -36.27586 -35.29126 -34.75940 -31.67897 -31.44312 -29.29469 -27.47534 -26.64567 -26.23966 -25.71685 -25.23218 -23.30704 -21.09724 -20.80635 -19.66894 -18.82129 -17.41353 -16.95902 -16.62340 -16.26921 -16.01630 -15.68044 -15.28956 -15.04733 -14.89764 -14.73228 -14.31709 -14.20462 -13.40552 -13.11982 -13.00297 -12.81849 -12.58347 -12.51339 -12.32118 -12.20535 -12.04951 -11.79280 -11.52967 -11.40081 -11.34180 -11.19078 -11.07530 -11.06502 -10.92919 -10.88647 -10.69176 -10.38003 -10.27521 -10.11419 -9.95557 -9.65960 -9.64004 -9.23894 -8.67947 -8.60281 -8.41015 -6.04289 -4.16329 0.88061 3.20861 3.24666 3.32024 3.33605 3.45145 3.73678 4.25297 4.34711 4.43055 4.54206 4.70420 4.80419 4.82012 4.91679 4.98076 5.04013 5.05352 5.08114 5.19593 5.20976 5.24498 5.31365 5.36835 5.46675 5.56804 5.67471 5.72239 5.75952 5.83285 6.07110 6.22823 6.37308 6.64345 6.69919 6.71487 6.79508 6.90813 6.92960 7.02801 7.17827 7.31322 7.50170 7.66939 7.97789 8.09006 8.32286 8.82067 9.49030 10.96987 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.020451 B = 0.002711 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.799599 B =10324.120817 C =11096.722938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.375 6.375 3 C 0.061 3.939 4 C 0.046 3.954 5 N -0.506 5.506 6 C 0.032 3.968 7 C -0.136 4.136 8 C 0.146 3.854 9 H 0.093 0.907 10 N -1.120 6.120 11 S 2.592 3.408 12 O -0.965 6.965 13 O -0.962 6.962 14 C -0.583 4.583 15 C 0.082 3.918 16 C -0.164 4.164 17 C -0.163 4.163 18 C -0.502 4.502 19 H 0.058 0.942 20 C 0.064 3.936 21 N -0.883 5.883 22 Si 0.896 3.104 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.275 1.275 26 C 0.027 3.973 27 H 0.085 0.915 28 H 0.037 0.963 29 H 0.039 0.961 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.086 0.914 33 H 0.053 0.947 34 H 0.045 0.955 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.414 0.586 39 H 0.114 0.886 40 H 0.119 0.881 41 H 0.028 0.972 42 H 0.095 0.905 43 H 0.036 0.964 44 H 0.035 0.965 45 H 0.095 0.905 46 H 0.029 0.971 47 H 0.262 0.738 48 H 0.091 0.909 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.978 -0.634 11.410 23.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.293 6.293 3 C -0.016 4.016 4 C -0.082 4.082 5 N -0.231 5.231 6 C -0.095 4.095 7 C -0.176 4.176 8 C 0.037 3.963 9 H 0.111 0.889 10 N -0.876 5.876 11 S 2.690 3.310 12 O -0.955 6.955 13 O -0.952 6.952 14 C -0.717 4.717 15 C 0.080 3.920 16 C -0.222 4.222 17 C -0.221 4.221 18 C -0.541 4.541 19 H 0.076 0.924 20 C -0.138 4.138 21 N -0.521 5.521 22 Si 0.724 3.276 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.200 1.200 26 C -0.103 4.103 27 H 0.103 0.897 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.105 0.895 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.248 0.752 39 H 0.133 0.867 40 H 0.138 0.862 41 H 0.047 0.953 42 H 0.113 0.887 43 H 0.055 0.945 44 H 0.054 0.946 45 H 0.113 0.887 46 H 0.047 0.953 47 H 0.073 0.927 48 H 0.110 0.890 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -19.947 -1.514 10.327 22.512 hybrid contribution 0.918 1.731 1.325 2.366 sum -19.028 0.217 11.652 22.313 Atomic orbital electron populations 1.22736 0.81579 1.02739 0.99614 1.88019 1.18985 1.27051 1.95247 1.22625 0.93423 0.85402 1.00157 1.22365 0.93554 0.98270 0.94056 1.64879 1.05888 1.51003 1.01296 1.23321 0.99617 0.96209 0.90397 1.23006 0.93566 1.03609 0.97406 1.21510 0.92853 0.88895 0.93053 0.88946 1.55976 1.54141 1.15749 1.61733 1.05656 0.74911 0.75853 0.74582 1.93556 1.79804 1.38361 1.83780 1.93545 1.72442 1.75030 1.54186 1.30542 1.14895 1.13458 1.12786 1.17924 0.89528 0.94619 0.89956 1.22275 1.02551 0.95551 1.01784 1.22272 1.00539 0.99086 1.00218 1.20934 1.04063 1.30686 0.98415 0.92365 1.24944 0.97896 0.96050 0.94902 1.69801 1.28249 1.45063 1.09003 0.86537 0.81592 0.80382 0.79118 1.20646 1.21136 1.20010 1.23275 0.88942 1.02502 0.95556 0.89652 0.94435 0.94256 0.93048 0.93039 0.89536 0.92936 0.93628 0.89805 0.89765 0.89701 0.75223 0.86710 0.86243 0.95346 0.88658 0.94465 0.94559 0.88676 0.95251 0.92738 0.89048 0.92642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.37 -3.66 10.65 -35.23 -0.38 -4.04 16 3 C 0.06 0.47 5.77 37.16 0.21 0.68 16 4 C 0.05 0.38 5.42 -3.82 -0.02 0.36 16 5 N -0.51 -5.11 5.35 -230.20 -1.23 -6.34 16 6 C 0.03 0.31 5.10 -1.74 -0.01 0.30 16 7 C -0.14 -1.55 6.78 -24.87 -0.17 -1.72 16 8 C 0.15 1.72 3.43 -66.58 -0.23 1.50 16 9 H 0.09 1.06 7.26 -51.92 -0.38 0.68 16 10 N -1.12 -15.10 5.32 -3.74 -0.02 -15.12 16 11 S 2.59 47.21 4.42 -107.50 -0.47 46.73 16 12 O -0.96 -20.26 15.70 -57.54 -0.90 -21.17 16 13 O -0.96 -19.73 15.44 -57.54 -0.89 -20.62 16 14 C -0.58 -11.13 4.92 37.16 0.18 -10.95 16 15 C 0.08 1.97 0.52 -155.66 -0.08 1.89 16 16 C -0.16 -4.04 7.77 37.16 0.29 -3.75 16 17 C -0.16 -3.99 7.78 37.16 0.29 -3.70 16 18 C -0.50 -13.05 8.01 -34.44 -0.28 -13.33 16 19 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 20 C 0.06 1.69 5.15 -17.82 -0.09 1.60 16 21 N -0.88 -24.03 9.35 55.43 0.52 -23.51 16 22 Si 0.90 20.53 29.54 -169.99 -5.02 15.50 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 C 0.03 0.27 6.46 -2.75 -0.02 0.25 16 27 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.05 0.37 6.54 -51.93 -0.34 0.03 16 32 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.37 7.81 -51.92 -0.41 -0.04 16 34 H 0.05 0.38 8.01 -51.93 -0.42 -0.03 16 35 H 0.08 0.77 7.59 -51.92 -0.39 0.38 16 36 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.08 1.03 8.06 -51.93 -0.42 0.61 16 38 H 0.41 4.92 8.66 -34.47 -0.30 4.62 16 39 H 0.11 1.95 7.50 -51.93 -0.39 1.56 16 40 H 0.12 2.08 8.14 -51.93 -0.42 1.65 16 41 H 0.03 0.66 5.46 -51.93 -0.28 0.38 16 42 H 0.09 2.53 6.07 -51.93 -0.32 2.21 16 43 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.09 2.51 6.07 -51.93 -0.32 2.19 16 46 H 0.03 0.68 5.47 -51.93 -0.28 0.39 16 47 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 48 H 0.09 0.91 7.78 -51.93 -0.40 0.50 16 49 H 0.06 0.49 7.57 -51.93 -0.39 0.10 16 LS Contribution 384.35 15.07 5.79 5.79 Total: -1.00 -32.43 384.35 -9.79 -42.22 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -8.38 Total: 6.10 kcal Atomic # 6 Polarization: -26.75 SS G_CDS: 1.20 Total: -25.55 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: -0.73 Total: -44.97 kcal Atomic # 8 Polarization: -43.65 SS G_CDS: -2.17 Total: -45.82 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: 47.21 SS G_CDS: -0.47 Total: 46.73 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.43 -9.79 -42.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000556301351.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.520 kcal (2) G-P(sol) polarization free energy of solvation -32.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds