Wall clock time and date at job start Tue Mar 31 2020 17:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42895 * 114.00106 * 2 1 4 4 C 1.53003 * 109.47007 * 180.02562 * 3 2 1 5 5 N 1.46897 * 109.47175 * 65.00226 * 4 3 2 6 6 C 1.48813 * 111.18681 * 52.66416 * 5 4 3 7 7 C 1.54933 * 103.35205 * 159.50572 * 6 5 4 8 8 C 1.54594 * 102.91997 * 322.69117 * 7 6 5 9 9 H 1.09011 * 110.39051 * 262.99616 * 8 7 6 10 10 N 1.46495 * 110.31120 * 140.87493 * 8 7 6 11 11 S 1.65604 * 120.00142 * 99.28216 * 10 8 7 12 12 O 1.42102 * 104.27531 * 181.07217 * 11 10 8 13 13 O 1.42102 * 104.27651 * 308.92603 * 11 10 8 14 14 C 1.81395 * 104.45051 * 64.99932 * 11 10 8 15 15 C 1.52997 * 109.47022 * 179.97438 * 14 11 10 16 16 C 1.52999 * 109.47744 * 300.00062 * 15 14 11 17 17 C 1.53000 * 109.47108 * 60.00464 * 15 14 11 18 18 C 1.50697 * 109.47038 * 180.02562 * 15 14 11 19 19 H 1.08002 * 120.00347 * 0.02562 * 18 15 14 20 20 C 1.37880 * 120.00281 * 180.02562 * 18 15 14 21 21 N 1.31512 * 119.99742 * 359.97438 * 20 18 15 22 22 Si 1.86799 * 120.00341 * 180.02562 * 20 18 15 23 23 H 1.48498 * 109.47473 * 89.99491 * 22 20 18 24 24 H 1.48500 * 109.46830 * 209.99877 * 22 20 18 25 25 H 1.48501 * 109.46747 * 329.99292 * 22 20 18 26 26 C 1.47905 * 111.00050 * 169.99751 * 5 4 3 27 27 H 1.09000 * 109.47320 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46728 * 299.99310 * 1 2 3 29 29 H 1.09000 * 109.47382 * 59.99383 * 1 2 3 30 30 H 1.08998 * 109.47230 * 60.00476 * 3 2 1 31 31 H 1.08998 * 109.47225 * 300.00441 * 3 2 1 32 32 H 1.09000 * 109.47560 * 304.99899 * 4 3 2 33 33 H 1.09011 * 109.47014 * 185.00001 * 4 3 2 34 34 H 1.08998 * 110.51915 * 41.07024 * 6 5 4 35 35 H 1.09009 * 110.83927 * 278.09443 * 6 5 4 36 36 H 1.08999 * 110.72416 * 204.32980 * 7 6 5 37 37 H 1.08999 * 110.72531 * 81.04521 * 7 6 5 38 38 H 0.97001 * 119.99865 * 279.28577 * 10 8 7 39 39 H 1.08993 * 109.47319 * 300.00320 * 14 11 10 40 40 H 1.08997 * 109.47138 * 60.00297 * 14 11 10 41 41 H 1.09006 * 109.46487 * 59.99626 * 16 15 14 42 42 H 1.08994 * 109.47393 * 179.97438 * 16 15 14 43 43 H 1.09000 * 109.46889 * 300.00385 * 16 15 14 44 44 H 1.09001 * 109.47275 * 59.99667 * 17 15 14 45 45 H 1.09004 * 109.47596 * 179.97438 * 17 15 14 46 46 H 1.09004 * 109.47032 * 299.99703 * 17 15 14 47 47 H 0.97002 * 120.00266 * 180.02562 * 21 20 18 48 48 H 1.09002 * 109.91668 * 94.80258 * 26 5 4 49 49 H 1.09002 * 109.91761 * 333.70433 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9769 0.5627 -1.2562 6 6 3.4169 1.2764 -2.4358 7 6 4.3652 0.8612 -3.5885 8 6 5.7487 0.8199 -2.9000 9 1 6.2862 1.7527 -3.0711 10 7 6.5305 -0.3149 -3.3972 11 16 7.6818 -0.0794 -4.5640 12 8 8.2035 -1.3784 -4.8087 13 8 7.0047 0.6421 -5.5839 14 6 8.9291 0.9673 -3.7646 15 6 10.0601 1.2583 -4.7530 16 6 10.7047 -0.0578 -5.1926 17 6 9.4945 1.9828 -5.9762 18 6 11.0966 2.1274 -4.0886 19 1 10.9623 2.4405 -3.0638 20 6 12.2164 2.5229 -4.7892 21 7 12.3801 2.1412 -6.0370 22 14 13.5015 3.5995 -3.9654 23 1 14.5200 2.7408 -3.3093 24 1 14.1585 4.4549 -4.9861 25 1 12.8476 4.4589 -2.9461 26 6 5.4466 0.6446 -1.4002 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.6887 1.8463 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 3.8515 0.5681 0.8409 33 1 3.9786 2.1765 0.0889 34 1 3.4491 2.3548 -2.2806 35 1 2.3974 0.9486 -2.6394 36 1 4.3528 1.6051 -4.3851 37 1 4.0966 -0.1224 -3.9737 38 1 6.3737 -1.2042 -3.0430 39 1 8.4699 1.9047 -3.4510 40 1 9.3323 0.4510 -2.8934 41 1 9.9551 -0.6868 -5.6730 42 1 11.5101 0.1496 -5.8971 43 1 11.1076 -0.5739 -4.3211 44 1 9.0353 2.9204 -5.6631 45 1 10.3003 2.1906 -6.6803 46 1 8.7450 1.3538 -6.4566 47 1 13.1681 2.4191 -6.5298 48 1 5.9073 -0.2726 -1.0333 49 1 5.8273 1.5001 -0.8422 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000556301351.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:29 Heat of formation + Delta-G solvation = -133.663572 kcal Electronic energy + Delta-G solvation = -28287.659331 eV Core-core repulsion = 24376.279372 eV Total energy + Delta-G solvation = -3911.379959 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.34673 -38.56165 -38.11407 -38.03820 -36.85812 -35.70323 -33.62359 -32.26715 -30.01297 -28.36332 -28.19522 -27.67752 -27.23464 -26.82302 -23.97919 -22.01958 -21.52593 -21.36516 -20.29634 -18.84901 -17.88042 -17.69396 -17.32898 -17.14297 -16.86024 -16.69224 -16.41866 -16.13612 -15.62835 -15.24837 -14.95036 -14.92280 -14.63941 -14.41246 -14.24765 -13.81577 -13.56843 -13.40656 -13.25828 -13.11044 -12.99134 -12.92756 -12.87756 -12.75912 -12.48728 -12.36906 -12.28715 -12.20124 -12.16153 -12.07927 -11.93210 -11.81360 -11.75110 -11.54406 -11.35720 -10.66910 -10.52159 -10.40871 -10.29907 -9.29342 -8.02033 -6.20526 -0.58416 1.44512 1.46397 1.54729 1.91512 2.44770 2.87062 2.89937 3.07670 3.20283 3.35630 3.54599 3.74862 3.98348 4.05222 4.10480 4.19009 4.26320 4.31813 4.39576 4.43702 4.51895 4.55182 4.58419 4.61726 4.66788 4.74048 4.87252 4.88528 4.90913 4.93199 4.97593 5.00666 5.05743 5.10209 5.19394 5.30978 5.40668 5.52109 5.65771 5.90899 5.98656 6.06698 6.12415 6.14703 6.35185 6.37841 6.84446 7.47689 8.97780 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.020451 B = 0.002711 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.799599 B =10324.120817 C =11096.722938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.404 6.404 3 C 0.059 3.941 4 C 0.044 3.956 5 N -0.521 5.521 6 C 0.040 3.960 7 C -0.140 4.140 8 C 0.135 3.865 9 H 0.099 0.901 10 N -1.103 6.103 11 S 2.612 3.388 12 O -0.995 6.995 13 O -0.987 6.987 14 C -0.586 4.586 15 C 0.069 3.931 16 C -0.161 4.161 17 C -0.159 4.159 18 C -0.515 4.515 19 H 0.064 0.936 20 C 0.016 3.984 21 N -0.908 5.908 22 Si 0.954 3.046 23 H -0.279 1.279 24 H -0.288 1.288 25 H -0.266 1.266 26 C 0.031 3.969 27 H 0.088 0.912 28 H 0.050 0.950 29 H 0.045 0.955 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.423 0.577 39 H 0.138 0.862 40 H 0.138 0.862 41 H 0.031 0.969 42 H 0.070 0.930 43 H 0.039 0.961 44 H 0.041 0.959 45 H 0.069 0.931 46 H 0.033 0.967 47 H 0.261 0.739 48 H 0.092 0.908 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.132 0.320 13.575 25.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.324 6.324 3 C -0.018 4.018 4 C -0.084 4.084 5 N -0.247 5.247 6 C -0.088 4.088 7 C -0.180 4.180 8 C 0.027 3.973 9 H 0.117 0.883 10 N -0.863 5.863 11 S 2.709 3.291 12 O -0.986 6.986 13 O -0.977 6.977 14 C -0.718 4.718 15 C 0.067 3.933 16 C -0.219 4.219 17 C -0.217 4.217 18 C -0.554 4.554 19 H 0.082 0.918 20 C -0.184 4.184 21 N -0.547 5.547 22 Si 0.781 3.219 23 H -0.205 1.205 24 H -0.214 1.214 25 H -0.190 1.190 26 C -0.099 4.099 27 H 0.107 0.893 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.101 0.899 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.103 0.897 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.260 0.740 39 H 0.156 0.844 40 H 0.156 0.844 41 H 0.050 0.950 42 H 0.089 0.911 43 H 0.058 0.942 44 H 0.061 0.939 45 H 0.088 0.912 46 H 0.052 0.948 47 H 0.070 0.930 48 H 0.110 0.890 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -21.108 -0.561 12.504 24.540 hybrid contribution 1.192 1.409 0.665 1.962 sum -19.916 0.848 13.169 23.891 Atomic orbital electron populations 1.22858 0.80316 1.03326 1.00520 1.87970 1.20550 1.28381 1.95467 1.22718 0.92979 0.84894 1.01179 1.22436 0.94100 0.98900 0.92964 1.64867 1.05799 1.51896 1.02107 1.23261 0.99047 0.97040 0.89404 1.23003 0.93966 1.02956 0.98096 1.21809 0.92762 0.88285 0.94469 0.88267 1.55523 1.52872 1.16976 1.60946 1.04780 0.74880 0.74704 0.74691 1.93507 1.80720 1.39694 1.84652 1.93511 1.72844 1.75449 1.55852 1.30458 1.13869 1.15315 1.12179 1.17919 0.90922 0.93719 0.90758 1.22219 1.01982 0.96365 1.01324 1.22200 0.99734 0.99604 1.00192 1.21289 1.04601 1.30749 0.98730 0.91761 1.25693 0.99877 0.97359 0.95430 1.69948 1.28625 1.45998 1.10131 0.85613 0.79277 0.78827 0.78223 1.20516 1.21388 1.19030 1.23243 0.89244 1.03333 0.94071 0.89348 0.93169 0.93655 0.91396 0.92567 0.89898 0.91292 0.92082 0.89697 0.90144 0.90858 0.74048 0.84408 0.84410 0.94986 0.91114 0.94161 0.93944 0.91212 0.94823 0.92983 0.88973 0.90921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.40 -7.25 10.65 -148.98 -1.59 -8.84 16 3 C 0.06 0.77 5.77 71.98 0.42 1.19 16 4 C 0.04 0.61 5.42 86.30 0.47 1.08 16 5 N -0.52 -9.33 5.35 -882.21 -4.72 -14.05 16 6 C 0.04 0.68 5.10 86.59 0.44 1.12 16 7 C -0.14 -2.99 6.78 31.80 0.22 -2.77 16 8 C 0.13 2.89 3.43 45.87 0.16 3.05 16 9 H 0.10 2.01 7.26 -2.38 -0.02 1.99 16 10 N -1.10 -27.90 5.32 -165.74 -0.88 -28.78 16 11 S 2.61 92.38 4.42 -56.49 -0.25 92.13 16 12 O -1.00 -41.32 15.70 -127.65 -2.00 -43.33 16 13 O -0.99 -39.79 15.44 -127.65 -1.97 -41.76 16 14 C -0.59 -21.31 4.92 71.98 0.35 -20.96 16 15 C 0.07 3.27 0.52 -52.93 -0.03 3.24 16 16 C -0.16 -8.00 7.77 71.98 0.56 -7.44 16 17 C -0.16 -7.80 7.78 71.98 0.56 -7.24 16 18 C -0.51 -26.31 8.01 25.60 0.21 -26.11 16 19 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 20 C 0.02 0.82 5.15 84.66 0.44 1.26 16 21 N -0.91 -50.11 9.35 21.45 0.20 -49.91 16 22 Si 0.95 41.70 29.54 68.60 2.03 43.73 16 23 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 24 H -0.29 -12.58 7.11 99.48 0.71 -11.88 16 25 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 26 C 0.03 0.53 6.46 86.44 0.56 1.09 16 27 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.05 0.44 8.14 -2.38 -0.02 0.42 16 29 H 0.04 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.06 0.67 6.54 -2.39 -0.02 0.65 16 32 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.07 0.74 7.81 -2.38 -0.02 0.72 16 34 H 0.06 0.84 8.01 -2.39 -0.02 0.82 16 35 H 0.08 1.42 7.59 -2.38 -0.02 1.40 16 36 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.07 1.72 8.06 -2.39 -0.02 1.70 16 38 H 0.42 9.38 8.66 -96.74 -0.84 8.54 16 39 H 0.14 4.32 7.50 -2.39 -0.02 4.30 16 40 H 0.14 4.47 8.14 -2.39 -0.02 4.45 16 41 H 0.03 1.52 5.46 -2.38 -0.01 1.51 16 42 H 0.07 3.84 6.07 -2.39 -0.01 3.83 16 43 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.07 3.75 6.07 -2.38 -0.01 3.74 16 46 H 0.03 1.57 5.47 -2.39 -0.01 1.56 16 47 H 0.26 13.81 8.31 -92.71 -0.77 13.03 16 48 H 0.09 1.60 7.78 -2.39 -0.02 1.58 16 49 H 0.07 1.03 7.57 -2.39 -0.02 1.01 16 Total: -1.00 -68.83 384.35 -3.50 -72.33 By element: Atomic # 1 Polarization: 29.31 SS G_CDS: 0.10 Total: 29.41 kcal Atomic # 6 Polarization: -56.52 SS G_CDS: 5.59 Total: -50.93 kcal Atomic # 7 Polarization: -87.34 SS G_CDS: -5.40 Total: -92.74 kcal Atomic # 8 Polarization: -88.36 SS G_CDS: -5.56 Total: -93.92 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Atomic # 16 Polarization: 92.38 SS G_CDS: -0.25 Total: 92.13 kcal Total: -68.83 -3.50 -72.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000556301351.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.338 kcal (2) G-P(sol) polarization free energy of solvation -68.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds