Wall clock time and date at job start Tue Mar 31 2020 17:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46838 * 2 1 4 4 H 1.08999 * 109.47239 * 54.82256 * 3 2 1 5 5 C 1.50698 * 109.47063 * 174.82132 * 3 2 1 6 6 H 1.07995 * 120.00178 * 120.00441 * 5 3 2 7 7 C 1.37882 * 120.00035 * 300.00089 * 5 3 2 8 8 N 1.31514 * 119.99521 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99873 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46962 * 90.00292 * 9 7 5 11 11 H 1.48504 * 109.47032 * 209.99935 * 9 7 5 12 12 H 1.48499 * 109.47435 * 329.99839 * 9 7 5 13 13 N 1.46897 * 109.47293 * 294.82237 * 3 2 1 14 14 C 1.46898 * 111.00129 * 155.61808 * 13 3 2 15 15 H 1.09002 * 109.47152 * 34.57872 * 14 13 3 16 16 C 1.53005 * 109.47504 * 274.57702 * 14 13 3 17 17 C 1.50701 * 109.47490 * 154.57648 * 14 13 3 18 18 O 1.21292 * 119.99441 * 359.72467 * 17 14 13 19 19 N 1.34771 * 120.00328 * 180.02562 * 17 14 13 20 20 C 1.40098 * 120.00025 * 175.30959 * 19 17 14 21 21 C 1.38846 * 120.02064 * 215.48517 * 20 19 17 22 22 C 1.38124 * 120.04006 * 179.77504 * 21 20 19 23 23 C 1.38713 * 120.16074 * 0.53667 * 22 21 20 24 24 C 1.38995 * 119.93206 * 359.65432 * 23 22 21 25 25 C 1.38640 * 119.88497 * 0.11207 * 24 23 22 26 26 O 1.36122 * 120.78232 * 180.26132 * 24 23 22 27 27 C 1.43165 * 116.72766 * 342.80087 * 26 24 23 28 28 C 1.53462 * 108.24913 * 46.19014 * 27 26 24 29 29 O 1.36205 * 119.32006 * 179.55903 * 23 22 21 30 30 H 1.09002 * 109.47005 * 186.19568 * 1 2 3 31 31 H 1.08998 * 109.47820 * 306.19479 * 1 2 3 32 32 H 1.09003 * 109.47014 * 66.20038 * 1 2 3 33 33 H 1.09001 * 109.47144 * 240.00249 * 2 1 3 34 34 H 1.08998 * 109.47212 * 119.99960 * 2 1 3 35 35 H 0.97007 * 119.99451 * 179.97438 * 8 7 5 36 36 H 1.00897 * 111.00147 * 31.66738 * 13 3 2 37 37 H 1.09003 * 109.46786 * 304.73877 * 16 14 13 38 38 H 1.09004 * 109.46770 * 64.73416 * 16 14 13 39 39 H 1.08996 * 109.47471 * 184.73706 * 16 14 13 40 40 H 0.96996 * 120.00244 * 355.30753 * 19 17 14 41 41 H 1.08004 * 119.97904 * 0.04885 * 21 20 19 42 42 H 1.08006 * 119.92356 * 180.28152 * 22 21 20 43 43 H 1.07997 * 119.99137 * 179.97438 * 25 24 23 44 44 H 1.09007 * 109.70679 * 165.87998 * 27 26 24 45 45 H 1.08998 * 109.71147 * 286.49751 * 27 26 24 46 46 H 1.08999 * 109.71136 * 59.92037 * 28 27 26 47 47 H 1.09007 * 109.71029 * 180.54735 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6028 1.9824 0.8400 5 6 3.5414 1.4445 0.1282 6 1 4.1490 1.8884 -0.6465 7 6 4.1396 0.8798 1.2348 8 7 3.3997 0.3398 2.1784 9 14 6.0008 0.8816 1.3933 10 1 6.4365 2.1152 2.0959 11 1 6.4327 -0.3086 2.1693 12 1 6.6130 0.8397 0.0410 13 7 1.6550 2.0980 -1.2570 14 6 1.5899 3.5562 -1.0919 15 1 2.3589 3.8770 -0.3892 16 6 0.2120 3.9477 -0.5539 17 6 1.8170 4.2233 -2.4240 18 8 2.0187 3.5503 -3.4126 19 7 1.8020 5.5678 -2.5156 20 6 2.1099 6.1905 -3.7323 21 6 2.7996 7.3955 -3.7409 22 6 3.1075 8.0075 -4.9403 23 6 2.7196 7.4267 -6.1388 24 6 2.0257 6.2224 -6.1333 25 6 1.7210 5.6061 -4.9293 26 8 1.6413 5.6345 -7.2993 27 6 1.6365 6.4628 -8.4670 28 6 2.9506 7.2548 -8.4998 29 8 3.0244 8.0494 -7.3112 30 1 -0.3633 -1.0217 0.1109 31 1 -0.3635 0.6068 0.8293 32 1 -0.3633 0.4147 -0.9403 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.8205 -0.0579 2.9567 36 1 0.7794 1.7337 -1.6014 37 1 -0.5610 3.5537 -1.2137 38 1 0.0816 3.5340 0.4462 39 1 0.1340 5.0340 -0.5108 40 1 1.5779 6.1044 -1.7393 41 1 3.0993 7.8525 -2.8093 42 1 3.6480 8.9425 -4.9449 43 1 1.1815 4.6706 -4.9230 44 1 1.5600 5.8405 -9.3587 45 1 0.7930 7.1518 -8.4255 46 1 3.7944 6.5657 -8.5344 47 1 2.9678 7.9022 -9.3766 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564342880.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:40 Heat of formation + Delta-G solvation = -75.291322 kcal Electronic energy + Delta-G solvation = -28937.619860 eV Core-core repulsion = 24893.327160 eV Total energy + Delta-G solvation = -4044.292700 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.37530 -40.00900 -37.73168 -37.33771 -36.33207 -34.27844 -33.20013 -31.55768 -31.10050 -30.20600 -28.81651 -27.91122 -26.13654 -24.98291 -23.99625 -23.10565 -22.45290 -20.96755 -19.89511 -19.65501 -18.80316 -17.97817 -17.42338 -16.52891 -16.26233 -16.08847 -15.49874 -15.14278 -15.02226 -14.67096 -14.52356 -14.48978 -14.07896 -13.93602 -13.67786 -13.45568 -13.31870 -12.93729 -12.67305 -12.58270 -12.29470 -12.04881 -11.88170 -11.75154 -11.49830 -11.28384 -11.17346 -10.93832 -10.84257 -10.66006 -10.62776 -9.96750 -9.92064 -9.79333 -9.64755 -9.23101 -9.07323 -8.53098 -8.36491 -7.75298 -7.24932 -5.98075 -4.02126 1.17921 1.26407 2.83173 2.94349 2.99567 3.31584 3.32563 3.39449 3.46220 3.72075 4.02183 4.45083 4.53180 4.56443 4.65291 4.91984 5.01786 5.09231 5.15353 5.15776 5.19646 5.30854 5.38053 5.43360 5.59518 5.73893 5.83087 5.91684 6.08847 6.14513 6.16694 6.17797 6.24755 6.31848 6.34830 6.42293 6.76115 6.83304 6.84398 7.05691 7.14140 7.32579 7.41157 7.58640 7.76852 7.91483 8.22427 8.36163 8.52041 8.72021 9.06858 9.63349 11.07006 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015680 B = 0.002674 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.248658 B =10467.468333 C =11097.745202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C 0.221 3.779 4 H 0.005 0.995 5 C -0.496 4.496 6 H 0.061 0.939 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.893 3.107 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.663 5.663 14 C 0.079 3.921 15 H 0.113 0.887 16 C -0.177 4.177 17 C 0.517 3.483 18 O -0.496 6.496 19 N -0.681 5.681 20 C 0.165 3.835 21 C -0.145 4.145 22 C -0.094 4.094 23 C 0.024 3.976 24 C 0.070 3.930 25 C -0.118 4.118 26 O -0.304 6.304 27 C 0.021 3.979 28 C 0.021 3.979 29 O -0.310 6.310 30 H 0.038 0.962 31 H 0.042 0.958 32 H 0.035 0.965 33 H 0.043 0.957 34 H 0.101 0.899 35 H 0.259 0.741 36 H 0.325 0.675 37 H 0.056 0.944 38 H 0.071 0.929 39 H 0.055 0.945 40 H 0.410 0.590 41 H 0.136 0.864 42 H 0.136 0.864 43 H 0.152 0.848 44 H 0.120 0.880 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.234 16.272 -14.470 22.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C 0.115 3.885 4 H 0.023 0.977 5 C -0.534 4.534 6 H 0.080 0.920 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.722 3.278 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.294 5.294 14 C -0.036 4.036 15 H 0.131 0.869 16 C -0.237 4.237 17 C 0.305 3.695 18 O -0.367 6.367 19 N -0.329 5.329 20 C 0.069 3.931 21 C -0.165 4.165 22 C -0.113 4.113 23 C -0.021 4.021 24 C 0.024 3.976 25 C -0.138 4.138 26 O -0.218 6.218 27 C -0.055 4.055 28 C -0.055 4.055 29 O -0.225 6.225 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.119 0.881 35 H 0.069 0.931 36 H 0.144 0.856 37 H 0.075 0.925 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.246 0.754 41 H 0.153 0.847 42 H 0.154 0.846 43 H 0.169 0.831 44 H 0.138 0.862 45 H 0.094 0.906 46 H 0.095 0.905 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.416 15.566 -15.265 22.465 hybrid contribution 0.156 0.316 0.817 0.890 sum -5.261 15.882 -14.448 22.106 Atomic orbital electron populations 1.21887 0.99565 0.99832 0.99487 1.21759 0.91252 1.00147 1.03262 1.19212 0.95464 0.90087 0.83768 0.97706 1.21244 0.91235 1.36621 1.04330 0.92029 1.24940 0.98112 0.95532 0.95811 1.69871 1.34732 1.39347 1.09638 0.86562 0.85830 0.77331 0.78103 1.20885 1.21342 1.19855 1.60329 1.36088 0.99411 1.33614 1.21360 0.97841 0.92418 0.91987 0.86890 1.22510 0.97276 1.01230 1.02642 1.21436 0.75180 0.80588 0.92335 1.90670 1.44769 1.63161 1.38069 1.43766 1.70347 1.07736 1.11042 1.17372 0.96881 0.93043 0.85770 1.20701 1.01180 0.96525 0.98138 1.20138 1.01266 1.01121 0.88761 1.18823 1.01789 0.94617 0.86868 1.18670 0.98608 0.93505 0.86794 1.20491 1.02847 1.02553 0.87954 1.86357 1.83621 1.37308 1.14523 1.23615 0.97957 0.95612 0.88322 1.23591 0.98119 0.96273 0.87523 1.86292 1.85793 1.37437 1.12982 0.94333 0.93889 0.94568 0.93852 0.88134 0.93071 0.85568 0.92450 0.90962 0.92595 0.75404 0.84661 0.84589 0.83087 0.86194 0.90605 0.90541 0.86279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 9.62 37.16 0.36 -2.48 16 2 C -0.13 -2.92 5.37 -26.73 -0.14 -3.07 16 3 C 0.22 5.31 1.85 -68.87 -0.13 5.19 16 4 H 0.01 0.14 7.19 -51.93 -0.37 -0.24 16 5 C -0.50 -13.50 8.46 -34.44 -0.29 -13.79 16 6 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 7 C 0.06 1.54 5.29 -17.82 -0.09 1.45 16 8 N -0.90 -24.94 11.29 55.43 0.63 -24.31 16 9 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 13 N -0.66 -14.04 5.53 -102.17 -0.57 -14.61 16 14 C 0.08 1.38 2.81 -68.86 -0.19 1.19 16 15 H 0.11 2.11 7.61 -51.93 -0.40 1.71 16 16 C -0.18 -2.43 9.10 37.16 0.34 -2.10 16 17 C 0.52 8.95 7.06 -10.99 -0.08 8.87 16 18 O -0.50 -10.48 13.92 5.55 0.08 -10.41 16 19 N -0.68 -9.09 5.24 -9.85 -0.05 -9.14 16 20 C 0.16 2.29 6.29 -83.66 -0.53 1.76 16 21 C -0.14 -1.66 9.96 -39.40 -0.39 -2.06 16 22 C -0.09 -1.08 9.95 -39.45 -0.39 -1.47 16 23 C 0.02 0.31 6.49 -39.13 -0.25 0.06 16 24 C 0.07 1.01 6.49 -39.15 -0.25 0.75 16 25 C -0.12 -1.83 8.61 -39.24 -0.34 -2.17 16 26 O -0.30 -4.08 10.42 -32.91 -0.34 -4.42 16 27 C 0.02 0.17 7.26 37.40 0.27 0.45 16 28 C 0.02 0.17 7.26 37.40 0.27 0.44 16 29 O -0.31 -3.57 10.42 -33.18 -0.35 -3.91 16 30 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.04 0.62 6.65 -51.93 -0.35 0.27 16 33 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 35 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 36 H 0.33 6.48 6.26 -39.29 -0.25 6.23 16 37 H 0.06 0.77 8.05 -51.93 -0.42 0.35 16 38 H 0.07 1.06 7.51 -51.93 -0.39 0.67 16 39 H 0.06 0.59 7.34 -51.93 -0.38 0.21 16 40 H 0.41 4.03 8.05 -40.82 -0.33 3.70 16 41 H 0.14 1.19 8.06 -52.48 -0.42 0.77 16 42 H 0.14 1.25 8.06 -52.48 -0.42 0.83 16 43 H 0.15 2.64 6.27 -52.49 -0.33 2.31 16 44 H 0.12 0.65 8.14 -51.92 -0.42 0.23 16 45 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 47 H 0.12 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 379.68 15.07 5.72 5.72 Total: -1.00 -33.01 379.68 -8.61 -41.62 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -6.87 Total: 10.00 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: -1.85 Total: -6.98 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: 0.01 Total: -48.06 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -0.61 Total: -18.75 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.01 -8.61 -41.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564342880.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.668 kcal (2) G-P(sol) polarization free energy of solvation -33.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds