Wall clock time and date at job start Tue Mar 31 2020 17:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46838 * 2 1 4 4 H 1.08999 * 109.47239 * 54.82256 * 3 2 1 5 5 C 1.50698 * 109.47063 * 174.82132 * 3 2 1 6 6 H 1.07995 * 120.00178 * 120.00441 * 5 3 2 7 7 C 1.37882 * 120.00035 * 300.00089 * 5 3 2 8 8 N 1.31514 * 119.99521 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99873 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46962 * 90.00292 * 9 7 5 11 11 H 1.48504 * 109.47032 * 209.99935 * 9 7 5 12 12 H 1.48499 * 109.47435 * 329.99839 * 9 7 5 13 13 N 1.46897 * 109.47293 * 294.82237 * 3 2 1 14 14 C 1.46898 * 111.00129 * 155.61808 * 13 3 2 15 15 H 1.09002 * 109.47152 * 34.57872 * 14 13 3 16 16 C 1.53005 * 109.47504 * 274.57702 * 14 13 3 17 17 C 1.50701 * 109.47490 * 154.57648 * 14 13 3 18 18 O 1.21292 * 119.99441 * 359.72467 * 17 14 13 19 19 N 1.34771 * 120.00328 * 180.02562 * 17 14 13 20 20 C 1.40098 * 120.00025 * 175.30959 * 19 17 14 21 21 C 1.38846 * 120.02064 * 215.48517 * 20 19 17 22 22 C 1.38124 * 120.04006 * 179.77504 * 21 20 19 23 23 C 1.38713 * 120.16074 * 0.53667 * 22 21 20 24 24 C 1.38995 * 119.93206 * 359.65432 * 23 22 21 25 25 C 1.38640 * 119.88497 * 0.11207 * 24 23 22 26 26 O 1.36122 * 120.78232 * 180.26132 * 24 23 22 27 27 C 1.43165 * 116.72766 * 342.80087 * 26 24 23 28 28 C 1.53462 * 108.24913 * 46.19014 * 27 26 24 29 29 O 1.36205 * 119.32006 * 179.55903 * 23 22 21 30 30 H 1.09002 * 109.47005 * 186.19568 * 1 2 3 31 31 H 1.08998 * 109.47820 * 306.19479 * 1 2 3 32 32 H 1.09003 * 109.47014 * 66.20038 * 1 2 3 33 33 H 1.09001 * 109.47144 * 240.00249 * 2 1 3 34 34 H 1.08998 * 109.47212 * 119.99960 * 2 1 3 35 35 H 0.97007 * 119.99451 * 179.97438 * 8 7 5 36 36 H 1.00897 * 111.00147 * 31.66738 * 13 3 2 37 37 H 1.09003 * 109.46786 * 304.73877 * 16 14 13 38 38 H 1.09004 * 109.46770 * 64.73416 * 16 14 13 39 39 H 1.08996 * 109.47471 * 184.73706 * 16 14 13 40 40 H 0.96996 * 120.00244 * 355.30753 * 19 17 14 41 41 H 1.08004 * 119.97904 * 0.04885 * 21 20 19 42 42 H 1.08006 * 119.92356 * 180.28152 * 22 21 20 43 43 H 1.07997 * 119.99137 * 179.97438 * 25 24 23 44 44 H 1.09007 * 109.70679 * 165.87998 * 27 26 24 45 45 H 1.08998 * 109.71147 * 286.49751 * 27 26 24 46 46 H 1.08999 * 109.71136 * 59.92037 * 28 27 26 47 47 H 1.09007 * 109.71029 * 180.54735 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6028 1.9824 0.8400 5 6 3.5414 1.4445 0.1282 6 1 4.1490 1.8884 -0.6465 7 6 4.1396 0.8798 1.2348 8 7 3.3997 0.3398 2.1784 9 14 6.0008 0.8816 1.3933 10 1 6.4365 2.1152 2.0959 11 1 6.4327 -0.3086 2.1693 12 1 6.6130 0.8397 0.0410 13 7 1.6550 2.0980 -1.2570 14 6 1.5899 3.5562 -1.0919 15 1 2.3589 3.8770 -0.3892 16 6 0.2120 3.9477 -0.5539 17 6 1.8170 4.2233 -2.4240 18 8 2.0187 3.5503 -3.4126 19 7 1.8020 5.5678 -2.5156 20 6 2.1099 6.1905 -3.7323 21 6 2.7996 7.3955 -3.7409 22 6 3.1075 8.0075 -4.9403 23 6 2.7196 7.4267 -6.1388 24 6 2.0257 6.2224 -6.1333 25 6 1.7210 5.6061 -4.9293 26 8 1.6413 5.6345 -7.2993 27 6 1.6365 6.4628 -8.4670 28 6 2.9506 7.2548 -8.4998 29 8 3.0244 8.0494 -7.3112 30 1 -0.3633 -1.0217 0.1109 31 1 -0.3635 0.6068 0.8293 32 1 -0.3633 0.4147 -0.9403 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.8205 -0.0579 2.9567 36 1 0.7794 1.7337 -1.6014 37 1 -0.5610 3.5537 -1.2137 38 1 0.0816 3.5340 0.4462 39 1 0.1340 5.0340 -0.5108 40 1 1.5779 6.1044 -1.7393 41 1 3.0993 7.8525 -2.8093 42 1 3.6480 8.9425 -4.9449 43 1 1.1815 4.6706 -4.9230 44 1 1.5600 5.8405 -9.3587 45 1 0.7930 7.1518 -8.4255 46 1 3.7944 6.5657 -8.5344 47 1 2.9678 7.9022 -9.3766 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564342880.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:39 Heat of formation + Delta-G solvation = -98.368854 kcal Electronic energy + Delta-G solvation = -28938.620577 eV Core-core repulsion = 24893.327160 eV Total energy + Delta-G solvation = -4045.293417 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.29633 -41.24604 -38.91271 -38.23151 -37.91313 -35.50260 -34.90851 -33.38792 -31.94768 -31.23396 -30.22915 -28.96363 -27.98420 -25.94465 -25.22667 -24.56219 -23.78037 -21.89212 -21.49803 -21.16541 -19.75457 -18.92741 -18.47004 -18.26776 -17.68160 -17.25604 -16.73250 -16.41343 -16.16783 -16.06026 -15.81492 -15.55756 -15.37871 -15.05122 -15.00450 -14.65303 -14.43363 -14.28834 -14.19935 -13.62253 -13.53161 -13.46236 -13.18809 -13.08520 -12.99232 -12.76144 -12.56522 -12.44830 -12.25583 -12.00635 -11.97564 -11.70370 -11.52656 -11.47430 -11.01995 -10.90239 -10.63063 -10.42389 -9.55487 -8.96199 -8.75212 -8.06255 -6.17576 0.16176 0.27203 1.39613 1.42524 1.52931 1.63890 1.91444 2.06076 2.37434 2.44746 2.71121 3.18666 3.30046 3.63777 3.67899 3.79703 3.94605 4.06385 4.13929 4.16739 4.21887 4.29894 4.39194 4.50468 4.53343 4.58548 4.59164 4.71178 4.73710 4.77777 4.86780 4.89408 5.09026 5.12756 5.21210 5.25888 5.27763 5.31591 5.37926 5.60023 5.74645 5.77007 5.89025 5.90740 6.32516 6.40440 6.40844 6.58905 6.94996 6.96165 7.24827 7.51433 8.96147 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015680 B = 0.002674 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.248658 B =10467.468333 C =11097.745202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.123 4.123 3 C 0.232 3.768 4 H -0.010 1.010 5 C -0.514 4.514 6 H 0.040 0.960 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.949 3.051 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.281 1.281 13 N -0.678 5.678 14 C 0.078 3.922 15 H 0.100 0.900 16 C -0.166 4.166 17 C 0.520 3.480 18 O -0.542 6.542 19 N -0.660 5.660 20 C 0.145 3.855 21 C -0.132 4.132 22 C -0.092 4.092 23 C 0.021 3.979 24 C 0.054 3.946 25 C -0.143 4.143 26 O -0.332 6.332 27 C 0.012 3.988 28 C 0.016 3.984 29 O -0.317 6.317 30 H 0.054 0.946 31 H 0.046 0.954 32 H 0.053 0.947 33 H 0.027 0.973 34 H 0.071 0.929 35 H 0.261 0.739 36 H 0.331 0.669 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.093 0.907 40 H 0.428 0.572 41 H 0.169 0.831 42 H 0.166 0.834 43 H 0.121 0.879 44 H 0.149 0.851 45 H 0.084 0.916 46 H 0.073 0.927 47 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.236 18.750 -15.006 24.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.161 4.161 3 C 0.125 3.875 4 H 0.007 0.993 5 C -0.553 4.553 6 H 0.058 0.942 7 C -0.182 4.182 8 N -0.554 5.554 9 Si 0.775 3.225 10 H -0.198 1.198 11 H -0.207 1.207 12 H -0.206 1.206 13 N -0.311 5.311 14 C -0.037 4.037 15 H 0.117 0.883 16 C -0.225 4.225 17 C 0.308 3.692 18 O -0.417 6.417 19 N -0.309 5.309 20 C 0.051 3.949 21 C -0.152 4.152 22 C -0.111 4.111 23 C -0.024 4.024 24 C 0.009 3.991 25 C -0.164 4.164 26 O -0.247 6.247 27 C -0.062 4.062 28 C -0.059 4.059 29 O -0.232 6.232 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.046 0.954 34 H 0.090 0.910 35 H 0.071 0.929 36 H 0.151 0.849 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.112 0.888 40 H 0.268 0.732 41 H 0.186 0.814 42 H 0.183 0.817 43 H 0.139 0.861 44 H 0.167 0.833 45 H 0.103 0.897 46 H 0.091 0.909 47 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -5.438 18.103 -15.795 24.632 hybrid contribution 0.169 -0.380 0.834 0.932 sum -5.269 17.723 -14.961 23.784 Atomic orbital electron populations 1.21740 0.96024 1.01196 1.00580 1.21605 0.94450 0.99132 1.00954 1.18930 0.93661 0.90573 0.84384 0.99251 1.21440 0.93027 1.36848 1.03977 0.94194 1.25557 1.01802 0.95246 0.95579 1.69971 1.36022 1.39561 1.09856 0.85702 0.81382 0.77790 0.77599 1.19771 1.20713 1.20640 1.60144 1.36864 1.01743 1.32313 1.21372 0.99800 0.90372 0.92119 0.88253 1.22396 0.94601 1.03731 1.01792 1.21321 0.74693 0.81722 0.91447 1.90662 1.47194 1.64530 1.39317 1.43433 1.69178 1.06474 1.11821 1.17550 0.98185 0.94116 0.85085 1.21022 0.99413 0.95056 0.99682 1.20555 1.00562 1.01837 0.88112 1.19044 1.01206 0.94004 0.88157 1.18772 0.99318 0.94223 0.86829 1.20415 1.04249 1.02100 0.89619 1.86307 1.83734 1.39140 1.15495 1.24001 0.98569 0.96123 0.87515 1.23915 0.97609 0.96894 0.87471 1.86279 1.85526 1.38055 1.13339 0.92668 0.93534 0.92823 0.95420 0.91024 0.92949 0.84914 0.91868 0.91762 0.88837 0.73229 0.81355 0.81688 0.86097 0.83319 0.89749 0.90919 0.82317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.12 9.62 71.98 0.69 -4.43 16 2 C -0.12 -5.83 5.37 30.59 0.16 -5.67 16 3 C 0.23 11.44 1.85 44.17 0.08 11.52 16 4 H -0.01 -0.52 7.19 -2.39 -0.02 -0.53 16 5 C -0.51 -28.84 8.46 25.60 0.22 -28.63 16 6 H 0.04 2.36 7.81 -2.91 -0.02 2.34 16 7 C 0.02 0.93 5.29 84.66 0.45 1.38 16 8 N -0.91 -51.58 11.29 21.45 0.24 -51.34 16 9 Si 0.95 44.55 29.54 68.60 2.03 46.58 16 10 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 12 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 13 N -0.68 -29.46 5.53 -477.16 -2.64 -32.10 16 14 C 0.08 2.74 2.81 44.17 0.12 2.87 16 15 H 0.10 3.78 7.61 -2.39 -0.02 3.76 16 16 C -0.17 -4.35 9.10 71.98 0.66 -3.70 16 17 C 0.52 18.28 7.06 87.66 0.62 18.89 16 18 O -0.54 -23.97 13.92 -3.07 -0.04 -24.01 16 19 N -0.66 -17.14 5.24 -303.47 -1.59 -18.73 16 20 C 0.15 3.97 6.29 38.09 0.24 4.21 16 21 C -0.13 -2.71 9.96 22.39 0.22 -2.49 16 22 C -0.09 -1.89 9.95 22.36 0.22 -1.66 16 23 C 0.02 0.53 6.49 22.57 0.15 0.67 16 24 C 0.05 1.58 6.49 22.55 0.15 1.73 16 25 C -0.14 -4.61 8.61 22.49 0.19 -4.42 16 26 O -0.33 -9.09 10.42 -82.71 -0.86 -9.95 16 27 C 0.01 0.19 7.26 72.14 0.52 0.72 16 28 C 0.02 0.22 7.26 72.14 0.52 0.75 16 29 O -0.32 -6.66 10.42 -83.66 -0.87 -7.53 16 30 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.05 1.79 6.65 -2.39 -0.02 1.77 16 33 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.07 3.83 5.95 -2.39 -0.01 3.81 16 35 H 0.26 14.07 8.31 -92.70 -0.77 13.30 16 36 H 0.33 13.38 6.26 -89.70 -0.56 12.82 16 37 H 0.06 1.60 8.05 -2.39 -0.02 1.58 16 38 H 0.06 1.82 7.51 -2.39 -0.02 1.80 16 39 H 0.09 1.72 7.34 -2.39 -0.02 1.70 16 40 H 0.43 7.54 8.05 -92.71 -0.75 6.79 16 41 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 42 H 0.17 2.40 8.06 -2.91 -0.02 2.38 16 43 H 0.12 4.59 6.27 -2.91 -0.02 4.57 16 44 H 0.15 1.34 8.14 -2.38 -0.02 1.32 16 45 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.16 0.91 8.14 -2.38 -0.02 0.89 16 Total: -1.00 -75.40 379.68 1.18 -74.22 By element: Atomic # 1 Polarization: 31.44 SS G_CDS: -0.30 Total: 31.14 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: 5.22 Total: -8.26 kcal Atomic # 7 Polarization: -98.19 SS G_CDS: -3.99 Total: -102.17 kcal Atomic # 8 Polarization: -39.72 SS G_CDS: -1.78 Total: -41.50 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -75.40 1.18 -74.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564342880.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.154 kcal (2) G-P(sol) polarization free energy of solvation -75.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds