Wall clock time and date at job start Tue Mar 31 2020 17:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47125 * 2 1 4 4 H 1.09001 * 109.46678 * 180.43770 * 3 2 1 5 5 C 1.50692 * 109.47347 * 300.43925 * 3 2 1 6 6 H 1.08003 * 119.99840 * 120.00356 * 5 3 2 7 7 C 1.37874 * 120.00252 * 300.00351 * 5 3 2 8 8 N 1.31515 * 120.00091 * 180.02562 * 7 5 3 9 9 Si 1.86800 * 119.99930 * 359.97438 * 7 5 3 10 10 H 1.48496 * 109.47299 * 90.00123 * 9 7 5 11 11 H 1.48503 * 109.47121 * 210.00183 * 9 7 5 12 12 H 1.48498 * 109.47043 * 329.99911 * 9 7 5 13 13 N 1.46899 * 109.46746 * 60.44275 * 3 2 1 14 14 C 1.46897 * 110.99990 * 80.49224 * 13 3 2 15 15 H 1.08997 * 109.47718 * 329.58050 * 14 13 3 16 16 C 1.53004 * 109.47275 * 89.58096 * 14 13 3 17 17 C 1.50703 * 109.47301 * 209.57922 * 14 13 3 18 18 O 1.21294 * 119.99570 * 0.02562 * 17 14 13 19 19 N 1.34769 * 120.00324 * 179.97438 * 17 14 13 20 20 C 1.40105 * 120.00302 * 185.15296 * 19 17 14 21 21 C 1.38844 * 120.02084 * 214.23544 * 20 19 17 22 22 C 1.38130 * 120.03372 * 179.77215 * 21 20 19 23 23 C 1.38714 * 120.16142 * 0.54861 * 22 21 20 24 24 C 1.38985 * 119.93342 * 359.63843 * 23 22 21 25 25 C 1.38649 * 119.88916 * 0.12743 * 24 23 22 26 26 O 1.36119 * 120.78185 * 180.27014 * 24 23 22 27 27 C 1.43170 * 116.73177 * 342.80245 * 26 24 23 28 28 C 1.53462 * 108.24318 * 46.18871 * 27 26 24 29 29 O 1.36207 * 119.31346 * 179.55545 * 23 22 21 30 30 H 1.08998 * 109.47321 * 175.13629 * 1 2 3 31 31 H 1.08994 * 109.46899 * 295.14028 * 1 2 3 32 32 H 1.09003 * 109.46734 * 55.13193 * 1 2 3 33 33 H 1.09004 * 109.47026 * 240.00039 * 2 1 3 34 34 H 1.08998 * 109.46912 * 120.00287 * 2 1 3 35 35 H 0.97005 * 120.00086 * 179.97438 * 8 7 5 36 36 H 1.00904 * 110.99841 * 204.43940 * 13 3 2 37 37 H 1.09008 * 109.46877 * 59.99797 * 16 14 13 38 38 H 1.08998 * 109.47183 * 179.97438 * 16 14 13 39 39 H 1.08999 * 109.47204 * 300.00184 * 16 14 13 40 40 H 0.96998 * 120.00244 * 5.16124 * 19 17 14 41 41 H 1.07994 * 119.98167 * 0.04873 * 21 20 19 42 42 H 1.08004 * 119.91925 * 180.28649 * 22 21 20 43 43 H 1.07995 * 119.99614 * 179.97438 * 25 24 23 44 44 H 1.08995 * 109.71156 * 165.88346 * 27 26 24 45 45 H 1.08997 * 109.70792 * 286.50556 * 27 26 24 46 46 H 1.09007 * 109.70879 * 59.92345 * 28 27 26 47 47 H 1.09006 * 109.71407 * 180.54985 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1301 1.4424 -0.0079 5 6 1.5289 2.1561 -1.2249 6 1 0.9088 3.0340 -1.1190 7 6 1.8528 1.6883 -2.4807 8 7 1.4071 2.3113 -3.5497 9 14 2.9260 0.1703 -2.6639 10 1 2.0675 -1.0407 -2.7060 11 1 3.7086 0.2662 -3.9223 12 1 3.8550 0.0786 -1.5090 13 7 1.5591 2.1318 1.2048 14 6 2.3897 1.7977 2.3694 15 1 2.7870 0.7892 2.2551 16 6 3.5471 2.7930 2.4728 17 6 1.5526 1.8690 3.6205 18 8 0.3794 2.1683 3.5489 19 7 2.1073 1.5993 4.8188 20 6 1.3072 1.5596 5.9682 21 6 1.8192 1.9868 7.1861 22 6 1.0291 1.9522 8.3186 23 6 -0.2733 1.4805 8.2455 24 6 -0.7873 1.0486 7.0286 25 6 0.0045 1.0880 5.8911 26 8 -2.0647 0.5876 6.9361 27 6 -2.7049 0.2144 8.1611 28 6 -2.4489 1.3206 9.1935 29 8 -1.0342 1.4455 9.3747 30 1 -0.3634 -1.0239 -0.0871 31 1 -0.3633 0.4366 0.9303 32 1 -0.3633 0.5875 -0.8432 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 1.6354 1.9824 -4.4333 36 1 1.5236 3.1299 1.0604 37 1 3.1498 3.8017 2.5872 38 1 4.1632 2.5454 3.3372 39 1 4.1526 2.7415 1.5679 40 1 3.0606 1.4328 4.8855 41 1 2.8342 2.3505 7.2471 42 1 1.4277 2.2893 9.2640 43 1 -0.3930 0.7524 4.9447 44 1 -3.7770 0.1053 7.9973 45 1 -2.2899 -0.7272 8.5208 46 1 -2.8578 2.2637 8.8307 47 1 -2.9189 1.0556 10.1406 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564342883.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:45 Heat of formation + Delta-G solvation = -66.946296 kcal Electronic energy + Delta-G solvation = -29105.512603 eV Core-core repulsion = 25061.581771 eV Total energy + Delta-G solvation = -4043.930832 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.44476 -40.14061 -37.86829 -37.39633 -36.54796 -34.40072 -33.39262 -31.63252 -31.17564 -30.31085 -28.99923 -27.99533 -26.30741 -25.02347 -24.07144 -23.13922 -22.92501 -21.13384 -20.21269 -19.27072 -18.87190 -18.10528 -17.59796 -16.85822 -16.28637 -16.13461 -15.63102 -15.47452 -15.14990 -14.81156 -14.57506 -14.36236 -14.17523 -13.97818 -13.66343 -13.54332 -13.46299 -13.11211 -12.80757 -12.72777 -12.62293 -12.27477 -12.17520 -11.96174 -11.57788 -11.32592 -11.25683 -11.01251 -10.72262 -10.63507 -10.54133 -10.24553 -10.07985 -9.92949 -9.46386 -9.32280 -8.99006 -8.61346 -8.58534 -7.83280 -7.51625 -6.10312 -4.09200 1.08979 1.17546 2.76030 2.80393 2.91133 3.20754 3.25825 3.32955 3.36203 3.63300 3.97162 4.36800 4.46437 4.51917 4.61564 4.79900 4.88137 4.95281 4.99059 5.08841 5.15223 5.20390 5.25842 5.30090 5.35598 5.63928 5.72631 5.73151 5.91252 6.00201 6.09540 6.15537 6.18122 6.22678 6.24977 6.46539 6.66838 6.69042 6.74328 6.90462 7.13467 7.19558 7.25614 7.40553 7.53629 7.60733 7.85444 8.26658 8.37309 8.58517 8.95719 9.51278 11.02538 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.022080 B = 0.002584 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.805004 B =10834.888583 C =11542.018103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.114 4.114 3 C 0.189 3.811 4 H 0.001 0.999 5 C -0.510 4.510 6 H 0.080 0.920 7 C 0.074 3.926 8 N -0.897 5.897 9 Si 0.886 3.114 10 H -0.277 1.277 11 H -0.298 1.298 12 H -0.269 1.269 13 N -0.651 5.651 14 C 0.068 3.932 15 H 0.100 0.900 16 C -0.177 4.177 17 C 0.515 3.485 18 O -0.489 6.489 19 N -0.682 5.682 20 C 0.165 3.835 21 C -0.146 4.146 22 C -0.093 4.093 23 C 0.025 3.975 24 C 0.073 3.927 25 C -0.117 4.117 26 O -0.303 6.303 27 C 0.020 3.980 28 C 0.021 3.979 29 O -0.310 6.310 30 H 0.019 0.981 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.042 0.958 34 H 0.028 0.972 35 H 0.264 0.736 36 H 0.348 0.652 37 H 0.063 0.937 38 H 0.056 0.944 39 H 0.073 0.927 40 H 0.409 0.591 41 H 0.135 0.865 42 H 0.136 0.864 43 H 0.149 0.851 44 H 0.121 0.879 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.319 -3.544 26.486 26.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.152 4.152 3 C 0.080 3.920 4 H 0.019 0.981 5 C -0.549 4.549 6 H 0.098 0.902 7 C -0.128 4.128 8 N -0.534 5.534 9 Si 0.716 3.284 10 H -0.204 1.204 11 H -0.226 1.226 12 H -0.194 1.194 13 N -0.282 5.282 14 C -0.047 4.047 15 H 0.118 0.882 16 C -0.236 4.236 17 C 0.302 3.698 18 O -0.359 6.359 19 N -0.329 5.329 20 C 0.070 3.930 21 C -0.167 4.167 22 C -0.112 4.112 23 C -0.020 4.020 24 C 0.027 3.973 25 C -0.138 4.138 26 O -0.217 6.217 27 C -0.055 4.055 28 C -0.055 4.055 29 O -0.225 6.225 30 H 0.038 0.962 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.060 0.940 34 H 0.047 0.953 35 H 0.074 0.926 36 H 0.168 0.832 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.092 0.908 40 H 0.245 0.755 41 H 0.152 0.848 42 H 0.154 0.846 43 H 0.166 0.834 44 H 0.139 0.861 45 H 0.095 0.905 46 H 0.095 0.905 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.094 -3.803 26.260 26.557 hybrid contribution 1.623 -0.551 -0.289 1.738 sum 0.529 -4.355 25.971 26.339 Atomic orbital electron populations 1.21487 0.95257 0.98329 1.03341 1.21796 0.97769 0.98015 0.97651 1.19622 0.92886 0.91335 0.88155 0.98136 1.20932 1.32416 1.13335 0.88181 0.90153 1.24876 0.95497 0.96676 0.95777 1.69884 1.45228 1.40355 0.97979 0.86885 0.80846 0.83918 0.76735 1.20381 1.22574 1.19447 1.60127 1.51181 1.14474 1.02448 1.21466 0.91454 1.00962 0.90799 0.88203 1.22481 0.98444 0.99929 1.02768 1.21305 0.88958 0.75565 0.83969 1.90719 1.16419 1.43015 1.85723 1.43772 1.11591 1.71863 1.05721 1.17329 0.91222 0.97811 0.86625 1.20649 1.01052 1.03961 0.91036 1.20138 0.91196 1.00723 0.99183 1.18821 0.93217 1.04427 0.85551 1.18646 0.85584 0.99625 0.93424 1.20381 0.92632 1.02525 0.98265 1.86372 1.24030 1.79687 1.31619 1.23630 0.99837 0.97567 0.84497 1.23604 0.80539 0.99672 1.01684 1.86297 1.17962 1.89931 1.28290 0.96207 0.92380 0.91182 0.93978 0.95335 0.92577 0.83225 0.91800 0.92531 0.90814 0.75471 0.84764 0.84571 0.83361 0.86092 0.90535 0.90509 0.86215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.79 9.53 37.16 0.35 -2.44 16 2 C -0.11 -2.51 5.21 -26.73 -0.14 -2.65 16 3 C 0.19 4.25 1.73 -68.87 -0.12 4.13 16 4 H 0.00 0.03 6.54 -51.93 -0.34 -0.31 16 5 C -0.51 -13.76 7.81 -34.45 -0.27 -14.03 16 6 H 0.08 2.38 7.93 -52.48 -0.42 1.96 16 7 C 0.07 2.08 5.45 -17.82 -0.10 1.98 16 8 N -0.90 -26.87 13.96 55.43 0.77 -26.09 16 9 Si 0.89 21.54 24.37 -169.99 -4.14 17.40 16 10 H -0.28 -6.67 6.87 56.52 0.39 -6.28 16 11 H -0.30 -7.29 7.11 56.52 0.40 -6.89 16 12 H -0.27 -6.19 6.53 56.52 0.37 -5.82 16 13 N -0.65 -12.94 4.89 -102.17 -0.50 -13.44 16 14 C 0.07 1.05 2.80 -68.86 -0.19 0.86 16 15 H 0.10 1.48 6.79 -51.93 -0.35 1.13 16 16 C -0.18 -2.21 9.05 37.16 0.34 -1.87 16 17 C 0.52 8.01 6.96 -10.99 -0.08 7.93 16 18 O -0.49 -9.62 14.19 5.55 0.08 -9.54 16 19 N -0.68 -8.03 5.27 -9.85 -0.05 -8.08 16 20 C 0.17 2.09 6.26 -83.66 -0.52 1.57 16 21 C -0.15 -1.48 9.96 -39.40 -0.39 -1.87 16 22 C -0.09 -0.97 9.95 -39.45 -0.39 -1.36 16 23 C 0.02 0.30 6.49 -39.13 -0.25 0.05 16 24 C 0.07 1.00 6.49 -39.15 -0.25 0.75 16 25 C -0.12 -1.74 8.57 -39.23 -0.34 -2.07 16 26 O -0.30 -3.96 10.42 -32.90 -0.34 -4.31 16 27 C 0.02 0.17 7.26 37.40 0.27 0.44 16 28 C 0.02 0.16 7.26 37.40 0.27 0.43 16 29 O -0.31 -3.35 10.42 -33.18 -0.35 -3.69 16 30 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 1.28 7.77 -51.93 -0.40 0.88 16 32 H 0.07 1.72 7.03 -51.93 -0.37 1.35 16 33 H 0.04 0.97 3.28 -51.93 -0.17 0.80 16 34 H 0.03 0.55 7.16 -51.93 -0.37 0.18 16 35 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.35 7.07 8.00 -39.29 -0.31 6.76 16 37 H 0.06 0.81 8.12 -51.92 -0.42 0.39 16 38 H 0.06 0.51 7.46 -51.93 -0.39 0.12 16 39 H 0.07 1.00 7.72 -51.93 -0.40 0.59 16 40 H 0.41 3.36 8.10 -40.82 -0.33 3.03 16 41 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 42 H 0.14 1.10 8.06 -52.48 -0.42 0.68 16 43 H 0.15 2.54 6.49 -52.49 -0.34 2.20 16 44 H 0.12 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.12 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 372.34 15.07 5.61 5.61 Total: -1.00 -33.85 372.34 -7.49 -41.34 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -6.76 Total: 8.98 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: -1.81 Total: -8.17 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: 0.22 Total: -47.61 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: -0.61 Total: -17.54 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.14 Total: 17.40 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.85 -7.49 -41.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564342883.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.608 kcal (2) G-P(sol) polarization free energy of solvation -33.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds