Wall clock time and date at job start Tue Mar 31 2020 17:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47125 * 2 1 4 4 H 1.09001 * 109.46678 * 180.43770 * 3 2 1 5 5 C 1.50692 * 109.47347 * 300.43925 * 3 2 1 6 6 H 1.08003 * 119.99840 * 120.00356 * 5 3 2 7 7 C 1.37874 * 120.00252 * 300.00351 * 5 3 2 8 8 N 1.31515 * 120.00091 * 180.02562 * 7 5 3 9 9 Si 1.86800 * 119.99930 * 359.97438 * 7 5 3 10 10 H 1.48496 * 109.47299 * 90.00123 * 9 7 5 11 11 H 1.48503 * 109.47121 * 210.00183 * 9 7 5 12 12 H 1.48498 * 109.47043 * 329.99911 * 9 7 5 13 13 N 1.46899 * 109.46746 * 60.44275 * 3 2 1 14 14 C 1.46897 * 110.99990 * 80.49224 * 13 3 2 15 15 H 1.08997 * 109.47718 * 329.58050 * 14 13 3 16 16 C 1.53004 * 109.47275 * 89.58096 * 14 13 3 17 17 C 1.50703 * 109.47301 * 209.57922 * 14 13 3 18 18 O 1.21294 * 119.99570 * 0.02562 * 17 14 13 19 19 N 1.34769 * 120.00324 * 179.97438 * 17 14 13 20 20 C 1.40105 * 120.00302 * 185.15296 * 19 17 14 21 21 C 1.38844 * 120.02084 * 214.23544 * 20 19 17 22 22 C 1.38130 * 120.03372 * 179.77215 * 21 20 19 23 23 C 1.38714 * 120.16142 * 0.54861 * 22 21 20 24 24 C 1.38985 * 119.93342 * 359.63843 * 23 22 21 25 25 C 1.38649 * 119.88916 * 0.12743 * 24 23 22 26 26 O 1.36119 * 120.78185 * 180.27014 * 24 23 22 27 27 C 1.43170 * 116.73177 * 342.80245 * 26 24 23 28 28 C 1.53462 * 108.24318 * 46.18871 * 27 26 24 29 29 O 1.36207 * 119.31346 * 179.55545 * 23 22 21 30 30 H 1.08998 * 109.47321 * 175.13629 * 1 2 3 31 31 H 1.08994 * 109.46899 * 295.14028 * 1 2 3 32 32 H 1.09003 * 109.46734 * 55.13193 * 1 2 3 33 33 H 1.09004 * 109.47026 * 240.00039 * 2 1 3 34 34 H 1.08998 * 109.46912 * 120.00287 * 2 1 3 35 35 H 0.97005 * 120.00086 * 179.97438 * 8 7 5 36 36 H 1.00904 * 110.99841 * 204.43940 * 13 3 2 37 37 H 1.09008 * 109.46877 * 59.99797 * 16 14 13 38 38 H 1.08998 * 109.47183 * 179.97438 * 16 14 13 39 39 H 1.08999 * 109.47204 * 300.00184 * 16 14 13 40 40 H 0.96998 * 120.00244 * 5.16124 * 19 17 14 41 41 H 1.07994 * 119.98167 * 0.04873 * 21 20 19 42 42 H 1.08004 * 119.91925 * 180.28649 * 22 21 20 43 43 H 1.07995 * 119.99614 * 179.97438 * 25 24 23 44 44 H 1.08995 * 109.71156 * 165.88346 * 27 26 24 45 45 H 1.08997 * 109.70792 * 286.50556 * 27 26 24 46 46 H 1.09007 * 109.70879 * 59.92345 * 28 27 26 47 47 H 1.09006 * 109.71407 * 180.54985 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1301 1.4424 -0.0079 5 6 1.5289 2.1561 -1.2249 6 1 0.9088 3.0340 -1.1190 7 6 1.8528 1.6883 -2.4807 8 7 1.4071 2.3113 -3.5497 9 14 2.9260 0.1703 -2.6639 10 1 2.0675 -1.0407 -2.7060 11 1 3.7086 0.2662 -3.9223 12 1 3.8550 0.0786 -1.5090 13 7 1.5591 2.1318 1.2048 14 6 2.3897 1.7977 2.3694 15 1 2.7870 0.7892 2.2551 16 6 3.5471 2.7930 2.4728 17 6 1.5526 1.8690 3.6205 18 8 0.3794 2.1683 3.5489 19 7 2.1073 1.5993 4.8188 20 6 1.3072 1.5596 5.9682 21 6 1.8192 1.9868 7.1861 22 6 1.0291 1.9522 8.3186 23 6 -0.2733 1.4805 8.2455 24 6 -0.7873 1.0486 7.0286 25 6 0.0045 1.0880 5.8911 26 8 -2.0647 0.5876 6.9361 27 6 -2.7049 0.2144 8.1611 28 6 -2.4489 1.3206 9.1935 29 8 -1.0342 1.4455 9.3747 30 1 -0.3634 -1.0239 -0.0871 31 1 -0.3633 0.4366 0.9303 32 1 -0.3633 0.5875 -0.8432 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 1.6354 1.9824 -4.4333 36 1 1.5236 3.1299 1.0604 37 1 3.1498 3.8017 2.5872 38 1 4.1632 2.5454 3.3372 39 1 4.1526 2.7415 1.5679 40 1 3.0606 1.4328 4.8855 41 1 2.8342 2.3505 7.2471 42 1 1.4277 2.2893 9.2640 43 1 -0.3930 0.7524 4.9447 44 1 -3.7770 0.1053 7.9973 45 1 -2.2899 -0.7272 8.5208 46 1 -2.8578 2.2637 8.8307 47 1 -2.9189 1.0556 10.1406 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564342883.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:44 Heat of formation + Delta-G solvation = -92.671238 kcal Electronic energy + Delta-G solvation = -29106.628120 eV Core-core repulsion = 25061.581771 eV Total energy + Delta-G solvation = -4045.046350 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.29360 -41.25445 -38.98226 -38.23733 -38.01351 -35.51204 -35.00158 -33.56658 -31.95159 -31.29179 -30.35231 -28.96214 -28.07943 -25.88908 -25.15422 -25.01123 -23.91983 -22.05160 -21.46247 -20.84424 -19.75849 -19.13341 -18.64646 -18.29838 -17.63879 -17.18405 -17.13088 -16.41250 -16.10896 -15.94837 -15.69499 -15.39561 -15.36039 -15.31746 -15.00007 -14.84159 -14.65582 -14.55686 -14.28827 -13.95597 -13.67055 -13.56481 -13.25328 -13.11923 -12.89306 -12.56366 -12.45764 -12.38716 -12.27771 -12.06994 -12.00747 -11.92698 -11.51803 -11.23643 -10.97115 -10.93227 -10.73946 -10.62345 -9.55131 -9.05642 -8.74253 -8.26604 -6.29448 0.16419 0.27481 1.33989 1.35677 1.46607 1.65566 1.90192 2.06794 2.33623 2.37308 2.72005 3.09005 3.29707 3.48392 3.67520 3.77864 3.93860 4.06399 4.10329 4.14016 4.16133 4.22178 4.35544 4.38451 4.43957 4.50331 4.58194 4.63245 4.74047 4.75283 4.83839 4.88533 4.95222 5.11267 5.13863 5.22747 5.26605 5.31183 5.31838 5.38363 5.63095 5.73998 5.76339 5.91299 5.98476 6.40750 6.45708 6.51880 6.69801 6.83015 7.26201 7.35294 8.90228 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.022080 B = 0.002584 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.805004 B =10834.888583 C =11542.018103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.116 4.116 3 C 0.197 3.803 4 H 0.010 0.990 5 C -0.507 4.507 6 H 0.034 0.966 7 C 0.016 3.984 8 N -0.949 5.949 9 Si 0.945 3.055 10 H -0.271 1.271 11 H -0.301 1.301 12 H -0.239 1.239 13 N -0.667 5.667 14 C 0.067 3.933 15 H 0.114 0.886 16 C -0.169 4.169 17 C 0.519 3.481 18 O -0.540 6.540 19 N -0.659 5.659 20 C 0.150 3.850 21 C -0.129 4.129 22 C -0.091 4.091 23 C 0.020 3.980 24 C 0.054 3.946 25 C -0.145 4.145 26 O -0.334 6.334 27 C 0.012 3.988 28 C 0.017 3.983 29 O -0.317 6.317 30 H 0.042 0.958 31 H 0.050 0.950 32 H 0.033 0.967 33 H 0.037 0.963 34 H 0.061 0.939 35 H 0.265 0.735 36 H 0.340 0.660 37 H 0.057 0.943 38 H 0.100 0.900 39 H 0.065 0.935 40 H 0.429 0.571 41 H 0.174 0.826 42 H 0.167 0.833 43 H 0.113 0.887 44 H 0.147 0.853 45 H 0.083 0.917 46 H 0.074 0.926 47 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.803 -4.947 30.087 30.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.154 4.154 3 C 0.088 3.912 4 H 0.028 0.972 5 C -0.545 4.545 6 H 0.053 0.947 7 C -0.181 4.181 8 N -0.589 5.589 9 Si 0.772 3.228 10 H -0.198 1.198 11 H -0.229 1.229 12 H -0.163 1.163 13 N -0.298 5.298 14 C -0.047 4.047 15 H 0.132 0.868 16 C -0.228 4.228 17 C 0.306 3.694 18 O -0.414 6.414 19 N -0.308 5.308 20 C 0.055 3.945 21 C -0.149 4.149 22 C -0.110 4.110 23 C -0.025 4.025 24 C 0.008 3.992 25 C -0.167 4.167 26 O -0.249 6.249 27 C -0.063 4.063 28 C -0.058 4.058 29 O -0.232 6.232 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.159 0.841 37 H 0.076 0.924 38 H 0.119 0.881 39 H 0.084 0.916 40 H 0.269 0.731 41 H 0.191 0.809 42 H 0.184 0.816 43 H 0.131 0.869 44 H 0.165 0.835 45 H 0.101 0.899 46 H 0.092 0.908 47 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 1.432 -5.224 29.935 30.421 hybrid contribution 0.703 -0.052 -1.253 1.438 sum 2.135 -5.275 28.681 29.241 Atomic orbital electron populations 1.21357 0.95871 0.98986 1.01315 1.21798 0.97238 0.97510 0.98873 1.19410 0.92956 0.91521 0.87317 0.97213 1.21161 1.30921 1.12040 0.90389 0.94742 1.25719 0.97105 0.99961 0.95318 1.70046 1.47569 1.42670 0.98631 0.85903 0.79493 0.79854 0.77507 1.19772 1.22854 1.16286 1.59978 1.53106 1.13766 1.02933 1.21569 0.91724 1.02526 0.88859 0.86793 1.22406 0.97409 0.98632 1.04368 1.21284 0.88140 0.74966 0.84985 1.90718 1.18544 1.45667 1.86507 1.43440 1.12451 1.70506 1.04451 1.17492 0.90689 0.98656 0.87655 1.21012 1.02488 1.01929 0.89434 1.20589 0.90393 0.99472 1.00510 1.19063 0.94141 1.04060 0.85257 1.18783 0.85925 1.00546 0.93918 1.20299 0.94290 1.04712 0.97361 1.86316 1.24149 1.79916 1.34523 1.23994 1.01014 0.98020 0.83240 1.23900 0.79117 0.99345 1.03397 1.86281 1.19447 1.89760 1.27709 0.93863 0.93087 0.94761 0.94504 0.92043 0.92638 0.84142 0.92415 0.88126 0.91591 0.73056 0.80863 0.81601 0.86931 0.83492 0.89866 0.90810 0.82374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.20 9.53 71.98 0.69 -4.52 16 2 C -0.12 -4.91 5.21 30.60 0.16 -4.75 16 3 C 0.20 8.79 1.73 44.17 0.08 8.86 16 4 H 0.01 0.45 6.54 -2.39 -0.02 0.43 16 5 C -0.51 -28.27 7.81 25.60 0.20 -28.07 16 6 H 0.03 2.18 7.93 -2.91 -0.02 2.16 16 7 C 0.02 0.94 5.45 84.65 0.46 1.40 16 8 N -0.95 -59.16 13.96 21.45 0.30 -58.86 16 9 Si 0.95 43.97 24.37 68.60 1.67 45.64 16 10 H -0.27 -12.32 6.87 99.48 0.68 -11.63 16 11 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 12 H -0.24 -9.91 6.53 99.48 0.65 -9.26 16 13 N -0.67 -26.72 4.89 -477.17 -2.33 -29.06 16 14 C 0.07 1.96 2.80 44.17 0.12 2.08 16 15 H 0.11 3.01 6.79 -2.39 -0.02 3.00 16 16 C -0.17 -3.76 9.05 71.98 0.65 -3.10 16 17 C 0.52 15.75 6.96 87.66 0.61 16.36 16 18 O -0.54 -22.05 14.19 -3.07 -0.04 -22.09 16 19 N -0.66 -14.12 5.27 -303.46 -1.60 -15.72 16 20 C 0.15 3.59 6.26 38.09 0.24 3.83 16 21 C -0.13 -2.17 9.96 22.39 0.22 -1.94 16 22 C -0.09 -1.61 9.95 22.36 0.22 -1.39 16 23 C 0.02 0.46 6.49 22.56 0.15 0.61 16 24 C 0.05 1.51 6.49 22.55 0.15 1.65 16 25 C -0.15 -4.45 8.57 22.49 0.19 -4.26 16 26 O -0.33 -9.05 10.42 -82.68 -0.86 -9.91 16 27 C 0.01 0.18 7.26 72.14 0.52 0.71 16 28 C 0.02 0.23 7.26 72.14 0.52 0.75 16 29 O -0.32 -6.22 10.42 -83.69 -0.87 -7.09 16 30 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.05 2.29 7.77 -2.39 -0.02 2.27 16 32 H 0.03 1.72 7.03 -2.39 -0.02 1.70 16 33 H 0.04 1.60 3.28 -2.38 -0.01 1.59 16 34 H 0.06 2.20 7.16 -2.39 -0.02 2.18 16 35 H 0.26 15.53 8.31 -92.70 -0.77 14.75 16 36 H 0.34 14.37 8.00 -89.69 -0.72 13.65 16 37 H 0.06 1.37 8.12 -2.38 -0.02 1.35 16 38 H 0.10 1.34 7.46 -2.39 -0.02 1.32 16 39 H 0.07 1.60 7.72 -2.39 -0.02 1.59 16 40 H 0.43 5.34 8.10 -92.71 -0.75 4.59 16 41 H 0.17 1.53 8.06 -2.91 -0.02 1.51 16 42 H 0.17 1.94 8.06 -2.91 -0.02 1.92 16 43 H 0.11 4.20 6.49 -2.91 -0.02 4.18 16 44 H 0.15 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 47 H 0.16 0.80 8.14 -2.38 -0.02 0.78 16 Total: -1.00 -79.93 372.34 0.91 -79.02 By element: Atomic # 1 Polarization: 30.39 SS G_CDS: -0.53 Total: 29.86 kcal Atomic # 6 Polarization: -16.96 SS G_CDS: 5.18 Total: -11.78 kcal Atomic # 7 Polarization: -100.01 SS G_CDS: -3.63 Total: -103.64 kcal Atomic # 8 Polarization: -37.32 SS G_CDS: -1.78 Total: -39.09 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 1.67 Total: 45.64 kcal Total: -79.93 0.91 -79.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564342883.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.652 kcal (2) G-P(sol) polarization free energy of solvation -79.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds