Wall clock time and date at job start Tue Mar 31 2020 17:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46753 * 2 1 4 4 H 1.09001 * 109.47085 * 306.11348 * 3 2 1 5 5 C 1.50701 * 109.47111 * 186.11220 * 3 2 1 6 6 H 1.08002 * 119.99807 * 241.55960 * 5 3 2 7 7 C 1.37874 * 119.99807 * 61.56288 * 5 3 2 8 8 N 1.31516 * 119.99854 * 195.15942 * 7 5 3 9 9 Si 1.86798 * 120.00230 * 15.15100 * 7 5 3 10 10 H 1.48500 * 109.46860 * 94.39021 * 9 7 5 11 11 H 1.48498 * 109.47296 * 214.38579 * 9 7 5 12 12 H 1.48501 * 109.47084 * 334.39051 * 9 7 5 13 13 N 1.46900 * 109.47396 * 66.11287 * 3 2 1 14 14 C 1.46905 * 111.00104 * 268.66401 * 13 3 2 15 15 H 1.08995 * 109.47106 * 37.27162 * 14 13 3 16 16 C 1.53004 * 109.46711 * 277.27645 * 14 13 3 17 17 C 1.50702 * 109.47495 * 157.27752 * 14 13 3 18 18 O 1.21299 * 119.99650 * 359.97438 * 17 14 13 19 19 N 1.34765 * 120.00134 * 179.97438 * 17 14 13 20 20 C 1.40099 * 120.00083 * 185.18508 * 19 17 14 21 21 C 1.38850 * 120.01801 * 213.53928 * 20 19 17 22 22 C 1.38134 * 120.03596 * 179.76924 * 21 20 19 23 23 C 1.38706 * 120.16211 * 0.54573 * 22 21 20 24 24 C 1.38999 * 119.93530 * 359.63964 * 23 22 21 25 25 C 1.38649 * 119.88210 * 0.12831 * 24 23 22 26 26 O 1.36115 * 120.78732 * 180.26983 * 24 23 22 27 27 C 1.43165 * 116.72601 * 342.80248 * 26 24 23 28 28 C 1.53471 * 108.24776 * 46.19361 * 27 26 24 29 29 O 1.36199 * 119.32048 * 179.55663 * 23 22 21 30 30 H 1.09001 * 109.47342 * 294.56560 * 1 2 3 31 31 H 1.08998 * 109.47257 * 54.56998 * 1 2 3 32 32 H 1.09002 * 109.46783 * 174.57015 * 1 2 3 33 33 H 1.08993 * 109.47606 * 240.00035 * 2 1 3 34 34 H 1.09002 * 109.47061 * 119.99384 * 2 1 3 35 35 H 0.97002 * 120.00197 * 179.97438 * 8 7 5 36 36 H 1.00902 * 111.00623 * 144.70387 * 13 3 2 37 37 H 1.09003 * 109.47195 * 299.99793 * 16 14 13 38 38 H 1.08999 * 109.47353 * 59.99761 * 16 14 13 39 39 H 1.08998 * 109.46932 * 179.97438 * 16 14 13 40 40 H 0.97004 * 120.00191 * 5.17790 * 19 17 14 41 41 H 1.08000 * 119.98021 * 0.04394 * 21 20 19 42 42 H 1.07998 * 119.91822 * 180.27673 * 22 21 20 43 43 H 1.08000 * 119.99258 * 179.97438 * 25 24 23 44 44 H 1.09000 * 109.70721 * 165.88226 * 27 26 24 45 45 H 1.08998 * 109.71405 * 286.50298 * 27 26 24 46 46 H 1.08999 * 109.71020 * 59.91386 * 28 27 26 47 47 H 1.08998 * 109.70965 * 180.54915 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5899 1.9869 -0.8302 5 6 3.5393 1.4453 -0.1513 6 1 4.1599 1.8623 0.6281 7 6 4.1188 0.9156 -1.2847 8 7 5.4052 0.6424 -1.2992 9 14 3.0768 0.5858 -2.7995 10 1 3.1555 1.7504 -3.7175 11 1 3.5815 -0.6263 -3.4933 12 1 1.6650 0.3712 -2.3921 13 7 1.6744 2.0912 1.2663 14 6 0.3755 2.7684 1.1552 15 1 -0.2925 2.1733 0.5327 16 6 0.5717 4.1465 0.5201 17 6 -0.2265 2.9289 2.5275 18 8 0.3679 2.5188 3.5021 19 7 -1.4251 3.5278 2.6717 20 6 -1.9352 3.7747 3.9529 21 6 -3.3038 3.7155 4.1790 22 6 -3.8068 3.9542 5.4432 23 6 -2.9484 4.2647 6.4876 24 6 -1.5781 4.3285 6.2635 25 6 -1.0733 4.0841 4.9956 26 8 -0.7196 4.6263 7.2770 27 6 -1.2869 5.2288 8.4452 28 6 -2.5498 4.4442 8.8256 29 8 -3.4636 4.5057 7.7251 30 1 -0.3634 0.4272 0.9346 31 1 -0.3633 0.5957 -0.8373 32 1 -0.3633 -1.0231 -0.0972 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5137 0.8901 35 1 5.8128 0.2694 -2.0964 36 1 2.3930 2.7338 1.5642 37 1 1.2398 4.7418 1.1426 38 1 1.0071 4.0305 -0.4724 39 1 -0.3921 4.6489 0.4372 40 1 -1.9346 3.7881 1.8883 41 1 -3.9752 3.4782 3.3669 42 1 -4.8713 3.9032 5.6178 43 1 -0.0089 4.1337 4.8194 44 1 -0.5690 5.1894 9.2645 45 1 -1.5480 6.2658 8.2342 46 1 -2.2898 3.4056 9.0299 47 1 -3.0074 4.8898 9.7088 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564342884.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:48 Heat of formation + Delta-G solvation = -67.084641 kcal Electronic energy + Delta-G solvation = -29060.325900 eV Core-core repulsion = 25016.389069 eV Total energy + Delta-G solvation = -4043.936831 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.45343 -40.17174 -37.90003 -37.40543 -36.57752 -34.40754 -33.15436 -31.78838 -31.18409 -30.34910 -29.28747 -28.05909 -26.63234 -25.03862 -24.01920 -23.04408 -22.38897 -21.06312 -20.08243 -19.81195 -18.88535 -18.11933 -17.56190 -17.06055 -16.34972 -16.23398 -15.56110 -15.51436 -15.15209 -14.79095 -14.58353 -14.40962 -14.13857 -13.90706 -13.74922 -13.47019 -13.35537 -13.05005 -12.80698 -12.71386 -12.53561 -12.36709 -12.15097 -11.95191 -11.61579 -11.59640 -11.34122 -11.21410 -10.87061 -10.73754 -10.63820 -10.32810 -9.94545 -9.93430 -9.52297 -9.26653 -9.12730 -8.61709 -8.48573 -7.83362 -7.50474 -6.14441 -4.10122 1.08458 1.16982 2.75149 2.78620 2.91206 3.20266 3.24013 3.34576 3.35969 3.62870 3.96433 4.37468 4.45784 4.51237 4.60826 4.80821 4.88738 4.98045 4.98873 5.08258 5.14688 5.17348 5.28833 5.31472 5.39864 5.64119 5.71722 5.78218 5.93380 5.97758 5.99459 5.99680 6.15081 6.16469 6.20161 6.28594 6.61083 6.67113 6.68686 6.73191 6.92456 6.95601 7.24829 7.39706 7.41698 7.62261 7.91005 8.27898 8.36166 8.57439 8.94937 9.50309 10.98452 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.024686 B = 0.002473 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.990504 B =11320.070296 C =11830.973693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.114 4.114 3 C 0.196 3.804 4 H 0.002 0.998 5 C -0.529 4.529 6 H 0.077 0.923 7 C 0.078 3.922 8 N -0.889 5.889 9 Si 0.862 3.138 10 H -0.283 1.283 11 H -0.287 1.287 12 H -0.248 1.248 13 N -0.654 5.654 14 C 0.061 3.939 15 H 0.109 0.891 16 C -0.179 4.179 17 C 0.515 3.485 18 O -0.491 6.491 19 N -0.681 5.681 20 C 0.166 3.834 21 C -0.146 4.146 22 C -0.093 4.093 23 C 0.025 3.975 24 C 0.073 3.927 25 C -0.118 4.118 26 O -0.303 6.303 27 C 0.020 3.980 28 C 0.021 3.979 29 O -0.310 6.310 30 H 0.052 0.948 31 H 0.039 0.961 32 H 0.038 0.962 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.264 0.736 36 H 0.347 0.653 37 H 0.061 0.939 38 H 0.074 0.926 39 H 0.055 0.945 40 H 0.410 0.590 41 H 0.135 0.865 42 H 0.137 0.863 43 H 0.148 0.852 44 H 0.121 0.879 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.657 10.431 13.610 26.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.152 4.152 3 C 0.088 3.912 4 H 0.019 0.981 5 C -0.567 4.567 6 H 0.095 0.905 7 C -0.125 4.125 8 N -0.525 5.525 9 Si 0.689 3.311 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.172 1.172 13 N -0.286 5.286 14 C -0.054 4.054 15 H 0.127 0.873 16 C -0.238 4.238 17 C 0.302 3.698 18 O -0.361 6.361 19 N -0.328 5.328 20 C 0.071 3.929 21 C -0.167 4.167 22 C -0.112 4.112 23 C -0.020 4.020 24 C 0.027 3.973 25 C -0.139 4.139 26 O -0.217 6.217 27 C -0.055 4.055 28 C -0.055 4.055 29 O -0.225 6.225 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.167 0.833 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.074 0.926 40 H 0.246 0.754 41 H 0.153 0.847 42 H 0.154 0.846 43 H 0.166 0.834 44 H 0.139 0.861 45 H 0.095 0.905 46 H 0.095 0.905 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -20.201 9.454 14.492 26.599 hybrid contribution -0.371 0.673 -1.593 1.769 sum -20.572 10.127 12.899 26.309 Atomic orbital electron populations 1.21980 0.98994 0.99910 1.00168 1.21942 0.92460 0.99530 1.01270 1.19478 0.95991 0.90573 0.85199 0.98069 1.21081 0.89179 1.41140 1.05267 0.90463 1.24887 0.94769 0.94212 0.98657 1.69984 1.11443 1.42315 1.28795 0.87256 0.82492 0.77886 0.83477 1.20947 1.21274 1.17190 1.60238 1.01124 1.34141 1.33114 1.21728 0.96540 0.95646 0.91454 0.87314 1.22505 1.01966 0.96669 1.02685 1.21309 0.79789 0.75943 0.92718 1.90720 1.59881 1.44949 1.40598 1.43755 1.21690 1.61136 1.06238 1.17332 0.91701 0.98252 0.85646 1.20658 0.93531 1.05409 0.97117 1.20140 0.99493 1.01116 0.90421 1.18819 0.91079 1.05942 0.86198 1.18643 0.87715 1.01881 0.89046 1.20358 1.01782 1.02881 0.88879 1.86365 1.33979 1.76863 1.24532 1.23631 0.96972 0.96921 0.88004 1.23603 0.90936 1.01832 0.89131 1.86296 1.36226 1.87188 1.12764 0.92900 0.94157 0.94273 0.92828 0.91864 0.92615 0.83273 0.91953 0.90662 0.92596 0.75426 0.84720 0.84554 0.83426 0.86098 0.90532 0.90504 0.86212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 8.44 37.16 0.31 -2.41 16 2 C -0.11 -2.48 4.78 -26.73 -0.13 -2.61 16 3 C 0.20 4.42 1.62 -68.86 -0.11 4.30 16 4 H 0.00 0.04 5.82 -51.93 -0.30 -0.26 16 5 C -0.53 -14.37 9.05 -34.44 -0.31 -14.68 16 6 H 0.08 2.30 7.78 -52.49 -0.41 1.89 16 7 C 0.08 2.18 5.32 -17.82 -0.09 2.09 16 8 N -0.89 -26.65 13.96 55.43 0.77 -25.87 16 9 Si 0.86 20.45 25.70 -169.99 -4.37 16.08 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.25 -5.45 5.36 56.52 0.30 -5.15 16 13 N -0.65 -13.25 5.46 -102.16 -0.56 -13.81 16 14 C 0.06 0.95 2.03 -68.86 -0.14 0.81 16 15 H 0.11 1.62 4.99 -51.93 -0.26 1.36 16 16 C -0.18 -2.38 9.04 37.16 0.34 -2.04 16 17 C 0.52 8.08 6.96 -10.99 -0.08 8.01 16 18 O -0.49 -9.72 14.15 5.54 0.08 -9.65 16 19 N -0.68 -8.07 5.20 -9.85 -0.05 -8.12 16 20 C 0.17 2.10 6.27 -83.66 -0.52 1.57 16 21 C -0.15 -1.49 9.96 -39.39 -0.39 -1.89 16 22 C -0.09 -0.97 9.95 -39.45 -0.39 -1.36 16 23 C 0.02 0.30 6.49 -39.13 -0.25 0.05 16 24 C 0.07 0.99 6.49 -39.15 -0.25 0.74 16 25 C -0.12 -1.73 8.57 -39.23 -0.34 -2.06 16 26 O -0.30 -3.90 10.42 -32.89 -0.34 -4.24 16 27 C 0.02 0.16 7.26 37.40 0.27 0.43 16 28 C 0.02 0.15 7.26 37.40 0.27 0.43 16 29 O -0.31 -3.33 10.42 -33.16 -0.35 -3.68 16 30 H 0.05 0.91 6.34 -51.93 -0.33 0.58 16 31 H 0.04 0.66 7.84 -51.93 -0.41 0.25 16 32 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.05 1.22 4.56 -51.93 -0.24 0.98 16 34 H 0.06 1.46 8.14 -51.93 -0.42 1.04 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.35 7.31 7.87 -39.29 -0.31 7.00 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.07 1.09 7.35 -51.93 -0.38 0.71 16 39 H 0.06 0.55 7.69 -51.93 -0.40 0.15 16 40 H 0.41 3.40 8.40 -40.82 -0.34 3.06 16 41 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 42 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 43 H 0.15 2.46 6.44 -52.49 -0.34 2.12 16 44 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.12 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 370.88 15.07 5.59 5.59 Total: -1.00 -34.03 370.88 -7.80 -41.83 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -6.75 Total: 10.49 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: -1.82 Total: -8.62 kcal Atomic # 7 Polarization: -47.97 SS G_CDS: 0.16 Total: -47.80 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: -0.61 Total: -17.57 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -4.37 Total: 16.08 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.03 -7.80 -41.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564342884.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.252 kcal (2) G-P(sol) polarization free energy of solvation -34.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds