Wall clock time and date at job start Tue Mar 31 2020 17:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46753 * 2 1 4 4 H 1.09001 * 109.47085 * 306.11348 * 3 2 1 5 5 C 1.50701 * 109.47111 * 186.11220 * 3 2 1 6 6 H 1.08002 * 119.99807 * 241.55960 * 5 3 2 7 7 C 1.37874 * 119.99807 * 61.56288 * 5 3 2 8 8 N 1.31516 * 119.99854 * 195.15942 * 7 5 3 9 9 Si 1.86798 * 120.00230 * 15.15100 * 7 5 3 10 10 H 1.48500 * 109.46860 * 94.39021 * 9 7 5 11 11 H 1.48498 * 109.47296 * 214.38579 * 9 7 5 12 12 H 1.48501 * 109.47084 * 334.39051 * 9 7 5 13 13 N 1.46900 * 109.47396 * 66.11287 * 3 2 1 14 14 C 1.46905 * 111.00104 * 268.66401 * 13 3 2 15 15 H 1.08995 * 109.47106 * 37.27162 * 14 13 3 16 16 C 1.53004 * 109.46711 * 277.27645 * 14 13 3 17 17 C 1.50702 * 109.47495 * 157.27752 * 14 13 3 18 18 O 1.21299 * 119.99650 * 359.97438 * 17 14 13 19 19 N 1.34765 * 120.00134 * 179.97438 * 17 14 13 20 20 C 1.40099 * 120.00083 * 185.18508 * 19 17 14 21 21 C 1.38850 * 120.01801 * 213.53928 * 20 19 17 22 22 C 1.38134 * 120.03596 * 179.76924 * 21 20 19 23 23 C 1.38706 * 120.16211 * 0.54573 * 22 21 20 24 24 C 1.38999 * 119.93530 * 359.63964 * 23 22 21 25 25 C 1.38649 * 119.88210 * 0.12831 * 24 23 22 26 26 O 1.36115 * 120.78732 * 180.26983 * 24 23 22 27 27 C 1.43165 * 116.72601 * 342.80248 * 26 24 23 28 28 C 1.53471 * 108.24776 * 46.19361 * 27 26 24 29 29 O 1.36199 * 119.32048 * 179.55663 * 23 22 21 30 30 H 1.09001 * 109.47342 * 294.56560 * 1 2 3 31 31 H 1.08998 * 109.47257 * 54.56998 * 1 2 3 32 32 H 1.09002 * 109.46783 * 174.57015 * 1 2 3 33 33 H 1.08993 * 109.47606 * 240.00035 * 2 1 3 34 34 H 1.09002 * 109.47061 * 119.99384 * 2 1 3 35 35 H 0.97002 * 120.00197 * 179.97438 * 8 7 5 36 36 H 1.00902 * 111.00623 * 144.70387 * 13 3 2 37 37 H 1.09003 * 109.47195 * 299.99793 * 16 14 13 38 38 H 1.08999 * 109.47353 * 59.99761 * 16 14 13 39 39 H 1.08998 * 109.46932 * 179.97438 * 16 14 13 40 40 H 0.97004 * 120.00191 * 5.17790 * 19 17 14 41 41 H 1.08000 * 119.98021 * 0.04394 * 21 20 19 42 42 H 1.07998 * 119.91822 * 180.27673 * 22 21 20 43 43 H 1.08000 * 119.99258 * 179.97438 * 25 24 23 44 44 H 1.09000 * 109.70721 * 165.88226 * 27 26 24 45 45 H 1.08998 * 109.71405 * 286.50298 * 27 26 24 46 46 H 1.08999 * 109.71020 * 59.91386 * 28 27 26 47 47 H 1.08998 * 109.70965 * 180.54915 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5899 1.9869 -0.8302 5 6 3.5393 1.4453 -0.1513 6 1 4.1599 1.8623 0.6281 7 6 4.1188 0.9156 -1.2847 8 7 5.4052 0.6424 -1.2992 9 14 3.0768 0.5858 -2.7995 10 1 3.1555 1.7504 -3.7175 11 1 3.5815 -0.6263 -3.4933 12 1 1.6650 0.3712 -2.3921 13 7 1.6744 2.0912 1.2663 14 6 0.3755 2.7684 1.1552 15 1 -0.2925 2.1733 0.5327 16 6 0.5717 4.1465 0.5201 17 6 -0.2265 2.9289 2.5275 18 8 0.3679 2.5188 3.5021 19 7 -1.4251 3.5278 2.6717 20 6 -1.9352 3.7747 3.9529 21 6 -3.3038 3.7155 4.1790 22 6 -3.8068 3.9542 5.4432 23 6 -2.9484 4.2647 6.4876 24 6 -1.5781 4.3285 6.2635 25 6 -1.0733 4.0841 4.9956 26 8 -0.7196 4.6263 7.2770 27 6 -1.2869 5.2288 8.4452 28 6 -2.5498 4.4442 8.8256 29 8 -3.4636 4.5057 7.7251 30 1 -0.3634 0.4272 0.9346 31 1 -0.3633 0.5957 -0.8373 32 1 -0.3633 -1.0231 -0.0972 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5137 0.8901 35 1 5.8128 0.2694 -2.0964 36 1 2.3930 2.7338 1.5642 37 1 1.2398 4.7418 1.1426 38 1 1.0071 4.0305 -0.4724 39 1 -0.3921 4.6489 0.4372 40 1 -1.9346 3.7881 1.8883 41 1 -3.9752 3.4782 3.3669 42 1 -4.8713 3.9032 5.6178 43 1 -0.0089 4.1337 4.8194 44 1 -0.5690 5.1894 9.2645 45 1 -1.5480 6.2658 8.2342 46 1 -2.2898 3.4056 9.0299 47 1 -3.0074 4.8898 9.7088 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564342884.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:47 Heat of formation + Delta-G solvation = -93.220924 kcal Electronic energy + Delta-G solvation = -29061.459254 eV Core-core repulsion = 25016.389069 eV Total energy + Delta-G solvation = -4045.070186 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.30203 -41.30001 -39.01854 -38.24152 -38.00763 -35.50994 -34.86483 -33.58474 -31.95704 -31.36497 -30.62109 -29.02099 -28.28619 -25.92234 -25.15875 -24.38490 -23.72510 -21.93823 -21.51110 -21.22682 -19.77145 -19.30561 -18.70691 -18.30918 -17.75255 -17.19983 -17.01587 -16.40503 -16.14246 -15.95856 -15.83982 -15.38796 -15.31638 -15.05504 -14.98841 -14.76254 -14.60814 -14.33989 -14.18662 -13.96016 -13.70696 -13.55340 -13.45334 -13.14537 -13.07291 -12.66949 -12.61646 -12.43961 -12.39176 -12.01581 -11.86387 -11.76045 -11.50950 -11.18138 -11.04972 -10.93740 -10.73281 -10.52347 -9.55321 -9.08004 -8.74174 -8.30310 -6.31137 0.15701 0.27176 1.37519 1.40102 1.51143 1.62501 1.89142 2.06541 2.36805 2.37243 2.71627 3.03487 3.29453 3.51943 3.67246 3.75003 3.93840 4.06239 4.12039 4.13743 4.17262 4.21976 4.38540 4.44976 4.49235 4.50178 4.56516 4.58115 4.73334 4.74414 4.80321 4.87729 4.90229 5.13444 5.19768 5.21059 5.24478 5.24850 5.31191 5.34633 5.55506 5.75363 5.80724 5.90902 5.99207 6.40419 6.43618 6.48478 6.69771 6.82766 7.23186 7.33925 8.86739 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.024686 B = 0.002473 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.990504 B =11320.070296 C =11830.973693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.117 4.117 3 C 0.205 3.795 4 H 0.017 0.983 5 C -0.535 4.535 6 H 0.028 0.972 7 C 0.017 3.983 8 N -0.944 5.944 9 Si 0.932 3.068 10 H -0.276 1.276 11 H -0.290 1.290 12 H -0.213 1.213 13 N -0.671 5.671 14 C 0.061 3.939 15 H 0.128 0.872 16 C -0.173 4.173 17 C 0.519 3.481 18 O -0.543 6.543 19 N -0.658 5.658 20 C 0.150 3.850 21 C -0.129 4.129 22 C -0.090 4.090 23 C 0.020 3.980 24 C 0.054 3.946 25 C -0.146 4.146 26 O -0.334 6.334 27 C 0.012 3.988 28 C 0.017 3.983 29 O -0.317 6.317 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.045 0.955 34 H 0.036 0.964 35 H 0.265 0.735 36 H 0.336 0.664 37 H 0.050 0.950 38 H 0.066 0.934 39 H 0.099 0.901 40 H 0.430 0.570 41 H 0.174 0.826 42 H 0.167 0.833 43 H 0.113 0.887 44 H 0.148 0.852 45 H 0.083 0.917 46 H 0.073 0.927 47 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.723 11.016 12.776 30.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.155 4.155 3 C 0.096 3.904 4 H 0.035 0.965 5 C -0.573 4.573 6 H 0.047 0.953 7 C -0.181 4.181 8 N -0.583 5.583 9 Si 0.755 3.245 10 H -0.202 1.202 11 H -0.216 1.216 12 H -0.135 1.135 13 N -0.302 5.302 14 C -0.052 4.052 15 H 0.146 0.854 16 C -0.232 4.232 17 C 0.307 3.693 18 O -0.417 6.417 19 N -0.307 5.307 20 C 0.055 3.945 21 C -0.149 4.149 22 C -0.109 4.109 23 C -0.025 4.025 24 C 0.008 3.992 25 C -0.167 4.167 26 O -0.249 6.249 27 C -0.063 4.063 28 C -0.058 4.058 29 O -0.232 6.232 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.055 0.945 35 H 0.074 0.926 36 H 0.154 0.846 37 H 0.069 0.931 38 H 0.085 0.915 39 H 0.117 0.883 40 H 0.270 0.730 41 H 0.191 0.809 42 H 0.184 0.816 43 H 0.131 0.869 44 H 0.165 0.835 45 H 0.102 0.898 46 H 0.092 0.908 47 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -25.342 10.079 13.664 30.505 hybrid contribution 1.242 0.568 -1.100 1.753 sum -24.101 10.647 12.564 29.190 Atomic orbital electron populations 1.21884 0.95157 1.01784 1.01354 1.21881 0.95903 0.98147 0.99618 1.19300 0.92667 0.91751 0.86670 0.96513 1.21399 0.91802 1.40141 1.03976 0.95349 1.25859 0.96018 0.94011 1.02260 1.70146 1.13932 1.44323 1.29909 0.86142 0.82260 0.77614 0.78514 1.20152 1.21643 1.13538 1.60127 1.02818 1.35193 1.32067 1.21819 0.94351 0.96982 0.92071 0.85430 1.22441 1.04091 0.95253 1.01428 1.21253 0.80499 0.75658 0.91923 1.90719 1.61512 1.47511 1.41972 1.43411 1.20454 1.59745 1.07055 1.17492 0.92650 0.99151 0.85201 1.21018 0.92512 1.03215 0.98155 1.20586 1.00745 0.99670 0.89915 1.19063 0.90542 1.05527 0.87382 1.18781 0.88710 1.02722 0.88958 1.20292 1.00583 1.05222 0.90607 1.86311 1.35401 1.77386 1.25796 1.23997 0.98078 0.97053 0.87135 1.23902 0.90599 1.02012 0.89261 1.86279 1.37103 1.86984 1.12825 0.92542 0.91852 0.92379 0.93656 0.94527 0.92582 0.84603 0.93101 0.91482 0.88254 0.72987 0.80857 0.81588 0.86863 0.83478 0.89837 0.90826 0.82366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.61 8.44 71.98 0.61 -4.00 16 2 C -0.12 -4.97 4.78 30.59 0.15 -4.83 16 3 C 0.21 9.20 1.62 44.17 0.07 9.27 16 4 H 0.02 0.72 5.82 -2.39 -0.01 0.71 16 5 C -0.54 -30.35 9.05 25.60 0.23 -30.12 16 6 H 0.03 1.83 7.78 -2.91 -0.02 1.80 16 7 C 0.02 0.96 5.32 84.65 0.45 1.41 16 8 N -0.94 -59.14 13.96 21.45 0.30 -58.84 16 9 Si 0.93 41.93 25.70 68.60 1.76 43.69 16 10 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 11 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 12 H -0.21 -8.33 5.36 99.48 0.53 -7.80 16 13 N -0.67 -27.74 5.46 -477.14 -2.61 -30.35 16 14 C 0.06 1.84 2.03 44.17 0.09 1.93 16 15 H 0.13 3.34 4.99 -2.39 -0.01 3.33 16 16 C -0.17 -4.26 9.04 71.98 0.65 -3.61 16 17 C 0.52 16.02 6.96 87.66 0.61 16.63 16 18 O -0.54 -22.42 14.15 -3.09 -0.04 -22.47 16 19 N -0.66 -14.23 5.20 -303.47 -1.58 -15.81 16 20 C 0.15 3.59 6.27 38.09 0.24 3.83 16 21 C -0.13 -2.19 9.96 22.39 0.22 -1.97 16 22 C -0.09 -1.61 9.95 22.36 0.22 -1.38 16 23 C 0.02 0.46 6.49 22.56 0.15 0.61 16 24 C 0.05 1.50 6.49 22.55 0.15 1.64 16 25 C -0.15 -4.44 8.57 22.49 0.19 -4.24 16 26 O -0.33 -8.97 10.42 -82.64 -0.86 -9.83 16 27 C 0.01 0.18 7.26 72.14 0.52 0.70 16 28 C 0.02 0.22 7.26 72.14 0.52 0.75 16 29 O -0.32 -6.20 10.42 -83.60 -0.87 -7.07 16 30 H 0.06 1.76 6.34 -2.39 -0.02 1.75 16 31 H 0.06 1.74 7.84 -2.39 -0.02 1.72 16 32 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.04 1.97 4.56 -2.39 -0.01 1.96 16 34 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 36 H 0.34 15.05 7.87 -89.69 -0.71 14.34 16 37 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.07 1.79 7.35 -2.39 -0.02 1.77 16 39 H 0.10 1.56 7.69 -2.39 -0.02 1.54 16 40 H 0.43 5.43 8.40 -92.71 -0.78 4.65 16 41 H 0.17 1.57 8.06 -2.91 -0.02 1.54 16 42 H 0.17 1.95 8.06 -2.91 -0.02 1.93 16 43 H 0.11 4.17 6.44 -2.91 -0.02 4.15 16 44 H 0.15 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.16 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -81.38 370.88 0.54 -80.84 By element: Atomic # 1 Polarization: 33.84 SS G_CDS: -0.64 Total: 33.20 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: 5.08 Total: -13.37 kcal Atomic # 7 Polarization: -101.11 SS G_CDS: -3.88 Total: -105.00 kcal Atomic # 8 Polarization: -37.59 SS G_CDS: -1.78 Total: -39.37 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 1.76 Total: 43.69 kcal Total: -81.38 0.54 -80.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564342884.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.383 kcal (2) G-P(sol) polarization free energy of solvation -81.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds