Wall clock time and date at job start Tue Mar 31 2020 17:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46634 * 2 1 4 4 H 1.09001 * 109.47104 * 301.41671 * 3 2 1 5 5 C 1.50699 * 109.46911 * 181.41721 * 3 2 1 6 6 H 1.08000 * 120.00017 * 246.35703 * 5 3 2 7 7 C 1.37878 * 120.00073 * 66.35223 * 5 3 2 8 8 N 1.31512 * 120.00096 * 191.64617 * 7 5 3 9 9 Si 1.86803 * 119.99888 * 11.64777 * 7 5 3 10 10 H 1.48498 * 109.47255 * 94.79730 * 9 7 5 11 11 H 1.48499 * 109.46819 * 214.79518 * 9 7 5 12 12 H 1.48493 * 109.47094 * 334.79305 * 9 7 5 13 13 N 1.46901 * 109.46976 * 61.41796 * 3 2 1 14 14 C 1.46892 * 110.99861 * 259.84212 * 13 3 2 15 15 C 1.50707 * 109.47032 * 175.38560 * 14 13 3 16 16 O 1.21291 * 119.99691 * 359.97438 * 15 14 13 17 17 N 1.34773 * 119.99858 * 179.97438 * 15 14 13 18 18 C 1.39960 * 119.99684 * 184.46661 * 17 15 14 19 19 C 1.38622 * 120.00262 * 325.98661 * 18 17 15 20 20 C 1.39505 * 119.77885 * 179.97438 * 19 18 17 21 21 C 1.47735 * 120.11805 * 180.02562 * 20 19 18 22 22 O 1.21474 * 120.00024 * 359.97438 * 21 20 19 23 23 O 1.34714 * 120.00333 * 179.97438 * 21 20 19 24 24 C 1.45199 * 117.00334 * 180.02562 * 23 21 20 25 25 C 1.39668 * 119.76341 * 359.97438 * 20 19 18 26 26 C 1.37969 * 119.99536 * 0.02562 * 25 20 19 27 27 C 1.38265 * 120.22216 * 359.71857 * 26 25 20 28 28 C 1.50704 * 119.87971 * 180.27579 * 27 26 25 29 29 H 1.08994 * 109.47097 * 296.51624 * 1 2 3 30 30 H 1.08996 * 109.47529 * 56.52412 * 1 2 3 31 31 H 1.09009 * 109.46479 * 176.52150 * 1 2 3 32 32 H 1.09008 * 109.47030 * 240.00519 * 2 1 3 33 33 H 1.08991 * 109.47512 * 120.00283 * 2 1 3 34 34 H 0.96999 * 120.00572 * 180.02562 * 8 7 5 35 35 H 1.00905 * 110.99811 * 135.88227 * 13 3 2 36 36 H 1.09007 * 109.47478 * 295.38106 * 14 13 3 37 37 H 1.08994 * 109.47536 * 55.38752 * 14 13 3 38 38 H 0.96996 * 120.00317 * 4.47844 * 17 15 14 39 39 H 1.08005 * 120.10816 * 359.97438 * 19 18 17 40 40 H 1.08993 * 109.47030 * 60.00115 * 24 23 21 41 41 H 1.08998 * 109.46506 * 180.02562 * 24 23 21 42 42 H 1.08996 * 109.46884 * 299.99647 * 24 23 21 43 43 H 1.08003 * 120.00148 * 180.02562 * 25 20 19 44 44 H 1.07990 * 119.88961 * 180.02562 * 26 25 20 45 45 H 1.09001 * 109.46969 * 270.27312 * 28 27 26 46 46 H 1.08996 * 109.46890 * 30.27747 * 28 27 26 47 47 H 1.09003 * 109.46715 * 150.27863 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6560 1.9637 -0.8770 5 6 3.5465 1.4428 -0.0351 6 1 4.1064 1.8109 0.8119 7 6 4.2102 0.9730 -1.1486 8 7 5.5066 0.7572 -1.0991 9 14 3.2680 0.6430 -2.7275 10 1 3.3516 1.8330 -3.6118 11 1 3.8581 -0.5307 -3.4199 12 1 1.8454 0.3642 -2.4059 13 7 1.5784 2.1250 1.2162 14 6 0.4077 2.9667 0.9354 15 6 -0.1050 3.5597 2.2226 16 8 0.4500 3.3056 3.2707 17 7 -1.1801 4.3723 2.2090 18 6 -1.5999 4.9972 3.3888 19 6 -1.4611 4.3466 4.6050 20 6 -1.8807 4.9741 5.7783 21 6 -1.7358 4.2879 7.0785 22 8 -1.2511 3.1751 7.1274 23 8 -2.1412 4.8962 8.2101 24 6 -1.9677 4.1629 9.4513 25 6 -2.4372 6.2538 5.7193 26 6 -2.5708 6.8925 4.5037 27 6 -2.1500 6.2724 3.3417 28 6 -2.2939 6.9797 2.0188 29 1 -0.3633 0.4588 0.9195 30 1 -0.3634 0.5668 -0.8571 31 1 -0.3632 -1.0259 -0.0624 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 5.9736 0.4270 -1.8825 35 1 2.3219 2.6664 1.6314 36 1 0.6918 3.7686 0.2538 37 1 -0.3742 2.3608 0.4778 38 1 -1.6631 4.5239 1.3816 39 1 -1.0297 3.3573 4.6441 40 1 -0.9103 3.9440 9.5992 41 1 -2.3344 4.7646 10.2829 42 1 -2.5288 3.2297 9.4033 43 1 -2.7628 6.7433 6.6253 44 1 -3.0009 7.8821 4.4602 45 1 -3.2647 6.7423 1.5836 46 1 -2.2179 8.0561 2.1722 47 1 -1.5033 6.6520 1.3438 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565173661.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:52 Heat of formation + Delta-G solvation = -86.654402 kcal Electronic energy + Delta-G solvation = -28455.193990 eV Core-core repulsion = 24410.408550 eV Total energy + Delta-G solvation = -4044.785440 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.00460 -40.23815 -38.63404 -36.59241 -36.39824 -34.92789 -32.99646 -32.52174 -31.48734 -30.18346 -28.78620 -28.13430 -27.04428 -25.22038 -23.32724 -22.84554 -22.36408 -20.88984 -20.41338 -19.71674 -18.52548 -17.55731 -17.13024 -16.59611 -16.50792 -16.28310 -15.88465 -15.51775 -15.35372 -14.57765 -14.30624 -14.18799 -13.91371 -13.69401 -13.68766 -13.52083 -13.42887 -12.92546 -12.81398 -12.58885 -12.36585 -12.29900 -12.14390 -11.98152 -11.71415 -11.68620 -11.51770 -11.00868 -10.89420 -10.75517 -10.72206 -10.51385 -10.44085 -9.93831 -9.62192 -9.35074 -9.12762 -9.07743 -8.53575 -8.33126 -7.53864 -6.14972 -4.13289 0.44703 1.10155 2.28785 2.42877 2.73595 2.96282 3.22574 3.33208 3.34143 3.55511 4.35776 4.40165 4.48318 4.66083 4.77819 4.83101 4.88148 4.95871 5.04913 5.09743 5.14320 5.19186 5.23203 5.29067 5.37608 5.58811 5.60201 5.66198 5.71204 5.90002 6.00315 6.02857 6.07793 6.10764 6.18489 6.21607 6.24889 6.55572 6.70712 6.73771 6.95890 6.97503 7.27107 7.40148 7.58621 7.58920 7.86493 8.18463 8.29875 8.55214 8.93031 9.48355 10.97916 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015630 B = 0.002563 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.021187 B =10923.510184 C =11897.711389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.112 4.112 3 C 0.193 3.807 4 H 0.005 0.995 5 C -0.533 4.533 6 H 0.078 0.922 7 C 0.077 3.923 8 N -0.891 5.891 9 Si 0.865 3.135 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.248 1.248 13 N -0.663 5.663 14 C 0.040 3.960 15 C 0.510 3.490 16 O -0.494 6.494 17 N -0.680 5.680 18 C 0.143 3.857 19 C -0.055 4.055 20 C -0.116 4.116 21 C 0.507 3.493 22 O -0.495 6.495 23 O -0.358 6.358 24 C 0.036 3.964 25 C -0.079 4.079 26 C -0.117 4.117 27 C -0.080 4.080 28 C -0.121 4.121 29 H 0.055 0.945 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.264 0.736 35 H 0.350 0.650 36 H 0.056 0.944 37 H 0.101 0.899 38 H 0.411 0.589 39 H 0.159 0.841 40 H 0.064 0.936 41 H 0.102 0.898 42 H 0.063 0.937 43 H 0.137 0.863 44 H 0.134 0.866 45 H 0.076 0.924 46 H 0.075 0.925 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.788 14.078 10.615 28.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.151 4.151 3 C 0.085 3.915 4 H 0.023 0.977 5 C -0.571 4.571 6 H 0.096 0.904 7 C -0.126 4.126 8 N -0.528 5.528 9 Si 0.692 3.308 10 H -0.209 1.209 11 H -0.212 1.212 12 H -0.172 1.172 13 N -0.296 5.296 14 C -0.093 4.093 15 C 0.297 3.703 16 O -0.365 6.365 17 N -0.328 5.328 18 C 0.048 3.952 19 C -0.076 4.076 20 C -0.118 4.118 21 C 0.351 3.649 22 O -0.382 6.382 23 O -0.274 6.274 24 C -0.057 4.057 25 C -0.098 4.098 26 C -0.136 4.136 27 C -0.083 4.083 28 C -0.177 4.177 29 H 0.074 0.926 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.170 0.830 36 H 0.074 0.926 37 H 0.119 0.881 38 H 0.247 0.753 39 H 0.177 0.823 40 H 0.083 0.917 41 H 0.120 0.880 42 H 0.082 0.918 43 H 0.155 0.845 44 H 0.152 0.848 45 H 0.095 0.905 46 H 0.093 0.907 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -21.349 12.877 11.482 27.449 hybrid contribution -0.077 0.451 -1.653 1.715 sum -21.426 13.328 9.829 27.080 Atomic orbital electron populations 1.21884 0.98720 0.99711 1.00361 1.21912 0.92721 0.99295 1.01145 1.19499 0.95273 0.90671 0.86069 0.97694 1.21218 0.88823 1.43599 1.03412 0.90406 1.24918 0.94712 0.94256 0.98754 1.69952 1.08552 1.44437 1.29853 0.87188 0.81845 0.78009 0.83807 1.20870 1.21214 1.17191 1.60293 1.08108 1.31546 1.29623 1.21978 0.98047 0.97228 0.92030 1.21377 0.78759 0.77444 0.92676 1.90730 1.56563 1.56586 1.32622 1.43685 1.30988 1.47976 1.10107 1.17397 0.99468 0.91544 0.86812 1.21500 0.95361 1.01262 0.89432 1.18891 1.06634 0.96135 0.90094 1.21189 0.74858 0.84157 0.84660 1.90893 1.40449 1.19617 1.87288 1.86517 1.76660 1.48272 1.15995 1.23281 1.02759 0.97250 0.82433 1.21365 0.96563 0.93270 0.98621 1.20801 1.01334 1.00382 0.91047 1.20008 0.99496 0.92027 0.96772 1.20837 1.02642 1.00687 0.93559 0.92600 0.94456 0.94475 0.92939 0.91983 0.92575 0.83007 0.92623 0.88118 0.75274 0.82323 0.91682 0.88000 0.91798 0.84479 0.84820 0.90539 0.90655 0.91100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 8.58 37.16 0.32 -2.32 16 2 C -0.11 -2.44 4.95 -26.73 -0.13 -2.57 16 3 C 0.19 4.39 1.80 -68.86 -0.12 4.27 16 4 H 0.01 0.12 6.29 -51.93 -0.33 -0.21 16 5 C -0.53 -14.59 9.01 -34.44 -0.31 -14.90 16 6 H 0.08 2.35 7.71 -52.49 -0.40 1.94 16 7 C 0.08 2.16 5.39 -17.82 -0.10 2.06 16 8 N -0.89 -26.84 13.96 55.43 0.77 -26.07 16 9 Si 0.86 20.50 25.80 -169.99 -4.39 16.12 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.25 -5.45 5.28 56.52 0.30 -5.15 16 13 N -0.66 -13.52 5.55 -109.22 -0.61 -14.13 16 14 C 0.04 0.62 5.43 -4.98 -0.03 0.60 16 15 C 0.51 7.78 7.73 -10.98 -0.08 7.70 16 16 O -0.49 -9.61 13.67 5.55 0.08 -9.53 16 17 N -0.68 -7.68 4.75 -9.89 -0.05 -7.73 16 18 C 0.14 1.71 6.29 -83.74 -0.53 1.18 16 19 C -0.06 -0.79 8.25 -38.97 -0.32 -1.11 16 20 C -0.12 -1.47 5.87 -105.01 -0.62 -2.09 16 21 C 0.51 6.94 7.90 34.61 0.27 7.21 16 22 O -0.49 -8.41 16.13 -19.25 -0.31 -8.72 16 23 O -0.36 -3.88 9.81 -40.53 -0.40 -4.28 16 24 C 0.04 0.29 10.56 101.05 1.07 1.36 16 25 C -0.08 -0.75 9.61 -39.15 -0.38 -1.13 16 26 C -0.12 -0.95 9.67 -39.67 -0.38 -1.34 16 27 C -0.08 -0.73 5.90 -104.34 -0.62 -1.35 16 28 C -0.12 -0.74 9.46 36.01 0.34 -0.40 16 29 H 0.06 0.96 6.61 -51.93 -0.34 0.62 16 30 H 0.04 0.61 7.99 -51.93 -0.41 0.19 16 31 H 0.04 0.60 8.14 -51.92 -0.42 0.17 16 32 H 0.05 1.18 4.77 -51.92 -0.25 0.93 16 33 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.35 7.65 7.82 -39.29 -0.31 7.34 16 36 H 0.06 0.79 8.14 -51.92 -0.42 0.36 16 37 H 0.10 1.41 5.82 -51.93 -0.30 1.11 16 38 H 0.41 3.17 7.81 -40.82 -0.32 2.85 16 39 H 0.16 2.78 5.73 -52.48 -0.30 2.48 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.14 1.01 7.61 -52.48 -0.40 0.61 16 44 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 45 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 47 H 0.07 0.45 7.14 -51.93 -0.37 0.08 16 LS Contribution 382.33 15.07 5.76 5.76 Total: -1.00 -34.71 382.33 -7.53 -42.23 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -6.78 Total: 9.17 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: -1.61 Total: -2.83 kcal Atomic # 7 Polarization: -48.05 SS G_CDS: 0.12 Total: -47.93 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -0.63 Total: -22.53 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.39 Total: 16.12 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.71 -7.53 -42.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565173661.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.421 kcal (2) G-P(sol) polarization free energy of solvation -34.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds