Wall clock time and date at job start Tue Mar 31 2020 17:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46634 * 2 1 4 4 H 1.09001 * 109.47104 * 301.41671 * 3 2 1 5 5 C 1.50699 * 109.46911 * 181.41721 * 3 2 1 6 6 H 1.08000 * 120.00017 * 246.35703 * 5 3 2 7 7 C 1.37878 * 120.00073 * 66.35223 * 5 3 2 8 8 N 1.31512 * 120.00096 * 191.64617 * 7 5 3 9 9 Si 1.86803 * 119.99888 * 11.64777 * 7 5 3 10 10 H 1.48498 * 109.47255 * 94.79730 * 9 7 5 11 11 H 1.48499 * 109.46819 * 214.79518 * 9 7 5 12 12 H 1.48493 * 109.47094 * 334.79305 * 9 7 5 13 13 N 1.46901 * 109.46976 * 61.41796 * 3 2 1 14 14 C 1.46892 * 110.99861 * 259.84212 * 13 3 2 15 15 C 1.50707 * 109.47032 * 175.38560 * 14 13 3 16 16 O 1.21291 * 119.99691 * 359.97438 * 15 14 13 17 17 N 1.34773 * 119.99858 * 179.97438 * 15 14 13 18 18 C 1.39960 * 119.99684 * 184.46661 * 17 15 14 19 19 C 1.38622 * 120.00262 * 325.98661 * 18 17 15 20 20 C 1.39505 * 119.77885 * 179.97438 * 19 18 17 21 21 C 1.47735 * 120.11805 * 180.02562 * 20 19 18 22 22 O 1.21474 * 120.00024 * 359.97438 * 21 20 19 23 23 O 1.34714 * 120.00333 * 179.97438 * 21 20 19 24 24 C 1.45199 * 117.00334 * 180.02562 * 23 21 20 25 25 C 1.39668 * 119.76341 * 359.97438 * 20 19 18 26 26 C 1.37969 * 119.99536 * 0.02562 * 25 20 19 27 27 C 1.38265 * 120.22216 * 359.71857 * 26 25 20 28 28 C 1.50704 * 119.87971 * 180.27579 * 27 26 25 29 29 H 1.08994 * 109.47097 * 296.51624 * 1 2 3 30 30 H 1.08996 * 109.47529 * 56.52412 * 1 2 3 31 31 H 1.09009 * 109.46479 * 176.52150 * 1 2 3 32 32 H 1.09008 * 109.47030 * 240.00519 * 2 1 3 33 33 H 1.08991 * 109.47512 * 120.00283 * 2 1 3 34 34 H 0.96999 * 120.00572 * 180.02562 * 8 7 5 35 35 H 1.00905 * 110.99811 * 135.88227 * 13 3 2 36 36 H 1.09007 * 109.47478 * 295.38106 * 14 13 3 37 37 H 1.08994 * 109.47536 * 55.38752 * 14 13 3 38 38 H 0.96996 * 120.00317 * 4.47844 * 17 15 14 39 39 H 1.08005 * 120.10816 * 359.97438 * 19 18 17 40 40 H 1.08993 * 109.47030 * 60.00115 * 24 23 21 41 41 H 1.08998 * 109.46506 * 180.02562 * 24 23 21 42 42 H 1.08996 * 109.46884 * 299.99647 * 24 23 21 43 43 H 1.08003 * 120.00148 * 180.02562 * 25 20 19 44 44 H 1.07990 * 119.88961 * 180.02562 * 26 25 20 45 45 H 1.09001 * 109.46969 * 270.27312 * 28 27 26 46 46 H 1.08996 * 109.46890 * 30.27747 * 28 27 26 47 47 H 1.09003 * 109.46715 * 150.27863 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6560 1.9637 -0.8770 5 6 3.5465 1.4428 -0.0351 6 1 4.1064 1.8109 0.8119 7 6 4.2102 0.9730 -1.1486 8 7 5.5066 0.7572 -1.0991 9 14 3.2680 0.6430 -2.7275 10 1 3.3516 1.8330 -3.6118 11 1 3.8581 -0.5307 -3.4199 12 1 1.8454 0.3642 -2.4059 13 7 1.5784 2.1250 1.2162 14 6 0.4077 2.9667 0.9354 15 6 -0.1050 3.5597 2.2226 16 8 0.4500 3.3056 3.2707 17 7 -1.1801 4.3723 2.2090 18 6 -1.5999 4.9972 3.3888 19 6 -1.4611 4.3466 4.6050 20 6 -1.8807 4.9741 5.7783 21 6 -1.7358 4.2879 7.0785 22 8 -1.2511 3.1751 7.1274 23 8 -2.1412 4.8962 8.2101 24 6 -1.9677 4.1629 9.4513 25 6 -2.4372 6.2538 5.7193 26 6 -2.5708 6.8925 4.5037 27 6 -2.1500 6.2724 3.3417 28 6 -2.2939 6.9797 2.0188 29 1 -0.3633 0.4588 0.9195 30 1 -0.3634 0.5668 -0.8571 31 1 -0.3632 -1.0259 -0.0624 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 5.9736 0.4270 -1.8825 35 1 2.3219 2.6664 1.6314 36 1 0.6918 3.7686 0.2538 37 1 -0.3742 2.3608 0.4778 38 1 -1.6631 4.5239 1.3816 39 1 -1.0297 3.3573 4.6441 40 1 -0.9103 3.9440 9.5992 41 1 -2.3344 4.7646 10.2829 42 1 -2.5288 3.2297 9.4033 43 1 -2.7628 6.7433 6.6253 44 1 -3.0009 7.8821 4.4602 45 1 -3.2647 6.7423 1.5836 46 1 -2.2179 8.0561 2.1722 47 1 -1.5033 6.6520 1.3438 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565173661.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:52 Heat of formation + Delta-G solvation = -111.928510 kcal Electronic energy + Delta-G solvation = -28456.289958 eV Core-core repulsion = 24410.408550 eV Total energy + Delta-G solvation = -4045.881408 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.97730 -41.28817 -39.65869 -38.03923 -37.58540 -35.97057 -34.50692 -33.77591 -33.08325 -31.21150 -29.74004 -29.48449 -27.81600 -26.71391 -24.44705 -24.05106 -23.56049 -21.79231 -21.56465 -21.40584 -19.54500 -19.12974 -18.37249 -17.87564 -17.46959 -17.31592 -17.24043 -16.63124 -16.30226 -15.84381 -15.80894 -15.20077 -15.15540 -14.85089 -14.75186 -14.63637 -14.47366 -14.32890 -14.11806 -13.72877 -13.45688 -13.39337 -13.08324 -13.02883 -12.93553 -12.72363 -12.62365 -12.61680 -12.44475 -12.08262 -11.88971 -11.78216 -11.75592 -11.46576 -11.20867 -11.05850 -10.86432 -10.58955 -9.88870 -9.23948 -9.11827 -8.31462 -6.35507 -0.42428 0.23870 1.31855 1.36929 1.38881 1.50711 1.55565 1.61567 1.95814 2.35747 2.70539 3.03252 3.52233 3.60961 3.71187 3.84138 3.91334 4.12382 4.26788 4.27717 4.28401 4.34659 4.38237 4.43426 4.48997 4.53954 4.63157 4.65858 4.73886 4.83320 4.86181 4.87658 5.05517 5.20454 5.23762 5.24848 5.25279 5.28120 5.35164 5.38782 5.43262 5.53462 5.79160 5.87994 5.94946 6.34263 6.41861 6.59970 6.64710 6.78956 7.13329 7.30958 8.85545 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015630 B = 0.002563 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.021187 B =10923.510184 C =11897.711389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.115 4.115 3 C 0.201 3.799 4 H 0.023 0.977 5 C -0.540 4.540 6 H 0.027 0.973 7 C 0.015 3.985 8 N -0.946 5.946 9 Si 0.936 3.064 10 H -0.273 1.273 11 H -0.290 1.290 12 H -0.214 1.214 13 N -0.677 5.677 14 C 0.041 3.959 15 C 0.512 3.488 16 O -0.546 6.546 17 N -0.658 5.658 18 C 0.121 3.879 19 C -0.083 4.083 20 C -0.141 4.141 21 C 0.506 3.494 22 O -0.544 6.544 23 O -0.350 6.350 24 C 0.028 3.972 25 C -0.065 4.065 26 C -0.108 4.108 27 C -0.064 4.064 28 C -0.122 4.122 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.046 0.954 33 H 0.034 0.966 34 H 0.266 0.734 35 H 0.335 0.665 36 H 0.080 0.920 37 H 0.125 0.875 38 H 0.430 0.570 39 H 0.115 0.885 40 H 0.056 0.944 41 H 0.143 0.857 42 H 0.061 0.939 43 H 0.163 0.837 44 H 0.178 0.822 45 H 0.100 0.900 46 H 0.095 0.905 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.170 16.967 8.829 32.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.154 4.154 3 C 0.092 3.908 4 H 0.040 0.960 5 C -0.578 4.578 6 H 0.046 0.954 7 C -0.184 4.184 8 N -0.586 5.586 9 Si 0.759 3.241 10 H -0.199 1.199 11 H -0.216 1.216 12 H -0.136 1.136 13 N -0.309 5.309 14 C -0.091 4.091 15 C 0.300 3.700 16 O -0.422 6.422 17 N -0.306 5.306 18 C 0.026 3.974 19 C -0.104 4.104 20 C -0.143 4.143 21 C 0.353 3.647 22 O -0.436 6.436 23 O -0.266 6.266 24 C -0.065 4.065 25 C -0.083 4.083 26 C -0.126 4.126 27 C -0.067 4.067 28 C -0.178 4.178 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.053 0.947 34 H 0.075 0.925 35 H 0.153 0.847 36 H 0.098 0.902 37 H 0.143 0.857 38 H 0.271 0.729 39 H 0.133 0.867 40 H 0.075 0.925 41 H 0.161 0.839 42 H 0.080 0.920 43 H 0.180 0.820 44 H 0.195 0.805 45 H 0.118 0.882 46 H 0.114 0.886 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -25.816 15.820 9.697 31.793 hybrid contribution 1.282 -0.324 -0.919 1.611 sum -24.534 15.497 8.778 30.317 Atomic orbital electron populations 1.21784 0.95004 1.01474 1.01493 1.21851 0.96032 0.97881 0.99606 1.19354 0.91951 0.91981 0.87512 0.95975 1.21537 0.91685 1.42760 1.01841 0.95439 1.25921 0.95593 0.93966 1.02875 1.70121 1.10914 1.46401 1.31133 0.86056 0.81950 0.77875 0.78260 1.19857 1.21579 1.13596 1.60206 1.08958 1.32988 1.28720 1.22081 0.96605 0.97775 0.92681 1.21320 0.79323 0.77600 0.91741 1.90739 1.58528 1.58702 1.34212 1.43332 1.29681 1.46616 1.10991 1.17543 1.00968 0.92954 0.85897 1.21267 0.97285 1.00287 0.91585 1.18971 1.08550 0.97769 0.88970 1.21568 0.73771 0.83586 0.85796 1.90861 1.42944 1.21784 1.87995 1.86506 1.75864 1.48076 1.16113 1.23611 1.02569 0.98119 0.82194 1.21693 0.94607 0.91503 1.00528 1.21324 0.99825 1.01684 0.89760 1.20425 0.96873 0.90420 0.98943 1.20978 1.03842 1.01456 0.91511 0.92530 0.92023 0.92683 0.93521 0.94660 0.92512 0.84668 0.90197 0.85712 0.72941 0.86744 0.92532 0.83892 0.92048 0.81973 0.80477 0.88153 0.88627 0.91277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.53 8.58 71.98 0.62 -3.91 16 2 C -0.12 -4.89 4.95 30.60 0.15 -4.74 16 3 C 0.20 9.07 1.80 44.17 0.08 9.15 16 4 H 0.02 0.94 6.29 -2.39 -0.02 0.93 16 5 C -0.54 -30.84 9.01 25.60 0.23 -30.61 16 6 H 0.03 1.79 7.71 -2.91 -0.02 1.76 16 7 C 0.01 0.83 5.39 84.66 0.46 1.29 16 8 N -0.95 -59.49 13.96 21.45 0.30 -59.19 16 9 Si 0.94 41.90 25.80 68.60 1.77 43.67 16 10 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 11 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 12 H -0.21 -8.32 5.28 99.48 0.53 -7.80 16 13 N -0.68 -28.19 5.55 -499.46 -2.77 -30.96 16 14 C 0.04 1.21 5.43 85.56 0.46 1.68 16 15 C 0.51 15.75 7.73 87.66 0.68 16.43 16 16 O -0.55 -22.74 13.67 -3.06 -0.04 -22.78 16 17 N -0.66 -14.04 4.75 -303.59 -1.44 -15.48 16 18 C 0.12 2.79 6.29 38.11 0.24 3.03 16 19 C -0.08 -2.53 8.25 22.67 0.19 -2.34 16 20 C -0.14 -3.65 5.87 -20.12 -0.12 -3.77 16 21 C 0.51 14.63 7.90 70.33 0.56 15.18 16 22 O -0.54 -20.31 16.13 19.92 0.32 -19.99 16 23 O -0.35 -7.50 9.81 -56.24 -0.55 -8.05 16 24 C 0.03 0.44 10.56 113.37 1.20 1.64 16 25 C -0.06 -1.07 9.61 22.55 0.22 -0.85 16 26 C -0.11 -1.30 9.67 22.21 0.21 -1.08 16 27 C -0.06 -0.95 5.90 -19.68 -0.12 -1.06 16 28 C -0.12 -0.89 9.46 71.24 0.67 -0.21 16 29 H 0.06 1.82 6.61 -2.39 -0.02 1.80 16 30 H 0.06 1.70 7.99 -2.39 -0.02 1.68 16 31 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 32 H 0.05 2.01 4.77 -2.38 -0.01 2.00 16 33 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 35 H 0.34 15.58 7.82 -89.69 -0.70 14.88 16 36 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 37 H 0.13 3.09 5.82 -2.39 -0.01 3.08 16 38 H 0.43 5.39 7.81 -92.71 -0.72 4.66 16 39 H 0.11 4.50 5.73 -2.91 -0.02 4.48 16 40 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.14 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.06 0.99 8.14 -2.39 -0.02 0.98 16 43 H 0.16 1.81 7.61 -2.91 -0.02 1.79 16 44 H 0.18 0.67 8.06 -2.92 -0.02 0.65 16 45 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 46 H 0.09 0.39 8.08 -2.39 -0.02 0.37 16 47 H 0.07 0.58 7.14 -2.39 -0.02 0.56 16 Total: -1.00 -84.98 382.33 2.72 -82.25 By element: Atomic # 1 Polarization: 31.30 SS G_CDS: -0.59 Total: 30.71 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: 5.73 Total: -0.18 kcal Atomic # 7 Polarization: -101.72 SS G_CDS: -3.91 Total: -105.63 kcal Atomic # 8 Polarization: -50.55 SS G_CDS: -0.27 Total: -50.82 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 1.77 Total: 43.67 kcal Total: -84.98 2.72 -82.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565173661.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.676 kcal (2) G-P(sol) polarization free energy of solvation -84.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds