Wall clock time and date at job start Tue Mar 31 2020 17:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47163 * 2 1 4 4 H 1.09010 * 109.47125 * 179.81207 * 3 2 1 5 5 C 1.50704 * 109.46970 * 299.80398 * 3 2 1 6 6 H 1.08002 * 119.99575 * 116.28248 * 5 3 2 7 7 C 1.37881 * 120.00211 * 296.28072 * 5 3 2 8 8 N 1.31511 * 119.99938 * 353.05051 * 7 5 3 9 9 Si 1.86798 * 119.99898 * 173.04928 * 7 5 3 10 10 H 1.48494 * 109.47361 * 270.00144 * 9 7 5 11 11 H 1.48499 * 109.47010 * 30.00299 * 9 7 5 12 12 H 1.48499 * 109.47010 * 149.99945 * 9 7 5 13 13 N 1.46898 * 109.47403 * 59.80888 * 3 2 1 14 14 C 1.46898 * 111.00138 * 88.37121 * 13 3 2 15 15 C 1.50699 * 109.46875 * 185.19611 * 14 13 3 16 16 O 1.21281 * 120.00322 * 359.97438 * 15 14 13 17 17 N 1.34776 * 119.99907 * 180.02562 * 15 14 13 18 18 C 1.39953 * 120.00153 * 184.38358 * 17 15 14 19 19 C 1.38626 * 119.99719 * 332.22848 * 18 17 15 20 20 C 1.39506 * 119.77259 * 179.97438 * 19 18 17 21 21 C 1.47735 * 120.11553 * 180.02562 * 20 19 18 22 22 O 1.21479 * 120.00173 * 0.02562 * 21 20 19 23 23 O 1.34706 * 120.00433 * 180.02562 * 21 20 19 24 24 C 1.45197 * 117.00506 * 180.02562 * 23 21 20 25 25 C 1.39664 * 119.77166 * 0.02562 * 20 19 18 26 26 C 1.37971 * 119.98875 * 359.97438 * 25 20 19 27 27 C 1.38264 * 120.22875 * 359.72527 * 26 25 20 28 28 C 1.50696 * 119.88625 * 180.27045 * 27 26 25 29 29 H 1.09005 * 109.46738 * 305.06952 * 1 2 3 30 30 H 1.09003 * 109.47196 * 65.06422 * 1 2 3 31 31 H 1.09003 * 109.47335 * 185.07007 * 1 2 3 32 32 H 1.09005 * 109.47194 * 239.99955 * 2 1 3 33 33 H 1.08997 * 109.47126 * 119.99814 * 2 1 3 34 34 H 0.97006 * 120.00177 * 355.47185 * 8 7 5 35 35 H 1.00899 * 110.99902 * 212.32560 * 13 3 2 36 36 H 1.09000 * 109.47240 * 305.19484 * 14 13 3 37 37 H 1.09003 * 109.46825 * 65.19774 * 14 13 3 38 38 H 0.97006 * 119.99801 * 4.38264 * 17 15 14 39 39 H 1.07994 * 120.10810 * 359.97438 * 19 18 17 40 40 H 1.09002 * 109.47432 * 59.99825 * 24 23 21 41 41 H 1.09006 * 109.47712 * 179.97438 * 24 23 21 42 42 H 1.09002 * 109.46828 * 299.99793 * 24 23 21 43 43 H 1.08001 * 120.00837 * 180.02562 * 25 20 19 44 44 H 1.07997 * 119.88778 * 180.02562 * 26 25 20 45 45 H 1.08998 * 109.47468 * 270.27916 * 28 27 26 46 46 H 1.08999 * 109.46812 * 30.28144 * 28 27 26 47 47 H 1.09007 * 109.47016 * 150.27471 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1301 1.4425 0.0034 5 6 1.5416 2.1515 -1.2329 6 1 0.8718 2.9934 -1.1380 7 6 1.9407 1.7254 -2.4820 8 7 2.8598 0.7917 -2.5956 9 14 1.1760 2.4744 -4.0129 10 1 -0.0233 1.6898 -4.4016 11 1 0.7798 3.8778 -3.7323 12 1 2.1635 2.4511 -5.1216 13 7 1.5466 2.1364 1.1971 14 6 2.4685 1.9576 2.3267 15 6 1.8700 2.5724 3.5656 16 8 0.7828 3.1073 3.5126 17 7 2.5434 2.5288 4.7322 18 6 1.9496 3.0174 5.9016 19 6 0.9952 4.0200 5.8276 20 6 0.4059 4.5031 6.9962 21 6 -0.6125 5.5710 6.9261 22 8 -0.9385 6.0297 5.8496 23 8 -1.1796 6.0362 8.0560 24 6 -2.1729 7.0854 7.9115 25 6 0.7821 3.9737 8.2327 26 6 1.7331 2.9760 8.2951 27 6 2.3124 2.4930 7.1363 28 6 3.3459 1.3989 7.2131 29 1 -0.3633 0.5905 0.8412 30 1 -0.3634 0.4333 -0.9319 31 1 -0.3634 -1.0237 0.0908 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.3040 0.4494 -1.8041 35 1 1.3906 3.1154 1.0091 36 1 2.6363 0.8937 2.4939 37 1 3.4175 2.4443 2.1017 38 1 3.4396 2.1588 4.7614 39 1 0.7088 4.4256 4.8686 40 1 -2.9975 6.7231 7.2976 41 1 -2.5492 7.3676 8.8948 42 1 -1.7180 7.9530 7.4335 43 1 0.3281 4.3446 9.1398 44 1 2.0225 2.5675 9.2521 45 1 4.3369 1.8416 7.3132 46 1 3.1416 0.7662 8.0768 47 1 3.3065 0.7976 6.3047 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565173662.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:55 Heat of formation + Delta-G solvation = -93.534446 kcal Electronic energy + Delta-G solvation = -28421.200538 eV Core-core repulsion = 24376.116757 eV Total energy + Delta-G solvation = -4045.083781 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.02809 -40.25467 -38.62571 -36.59157 -36.40009 -34.96136 -32.98775 -32.83412 -30.90831 -30.10234 -28.78630 -27.42007 -26.78699 -24.65206 -23.51145 -23.26617 -22.72170 -20.90392 -20.45334 -19.32613 -18.50362 -17.69596 -17.21690 -16.52965 -16.47388 -16.37075 -15.69757 -15.48317 -14.89510 -14.60327 -14.28299 -13.95083 -13.92638 -13.76916 -13.66002 -13.52054 -13.43610 -13.08662 -12.82206 -12.40455 -12.34417 -12.11374 -11.97348 -11.86989 -11.66924 -11.64943 -11.13811 -11.01088 -10.78636 -10.73899 -10.56876 -10.20782 -10.12109 -10.03516 -9.72199 -9.52157 -9.07345 -8.54367 -8.37036 -8.28542 -7.48356 -6.38427 -4.10053 0.44997 1.11463 2.28221 2.42877 2.72189 2.94758 3.45254 3.46551 3.56847 3.62822 4.40088 4.47704 4.50411 4.65458 4.76923 4.84298 4.88016 4.95314 5.05018 5.13732 5.14707 5.22169 5.28632 5.34188 5.36613 5.58682 5.63011 5.66035 5.71388 5.89732 6.08017 6.11086 6.19706 6.24225 6.25843 6.44508 6.60157 6.74932 6.88894 7.01306 7.23174 7.26816 7.44926 7.56136 7.58958 7.80254 8.02166 8.17140 8.44547 8.53151 8.82738 9.59502 10.98060 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014010 B = 0.002573 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.131919 B =10880.993067 C =12351.676390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.106 4.106 3 C 0.205 3.795 4 H -0.005 1.005 5 C -0.595 4.595 6 H 0.056 0.944 7 C 0.025 3.975 8 N -0.910 5.910 9 Si 1.067 2.933 10 H -0.287 1.287 11 H -0.288 1.288 12 H -0.286 1.286 13 N -0.663 5.663 14 C 0.045 3.955 15 C 0.510 3.490 16 O -0.493 6.493 17 N -0.677 5.677 18 C 0.145 3.855 19 C -0.066 4.066 20 C -0.114 4.114 21 C 0.507 3.493 22 O -0.495 6.495 23 O -0.357 6.357 24 C 0.036 3.964 25 C -0.083 4.083 26 C -0.115 4.115 27 C -0.085 4.085 28 C -0.120 4.120 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.017 0.983 32 H 0.063 0.937 33 H 0.017 0.983 34 H 0.270 0.730 35 H 0.345 0.655 36 H 0.097 0.903 37 H 0.053 0.947 38 H 0.411 0.589 39 H 0.168 0.832 40 H 0.064 0.936 41 H 0.102 0.898 42 H 0.063 0.937 43 H 0.137 0.863 44 H 0.134 0.866 45 H 0.076 0.924 46 H 0.075 0.925 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.522 4.750 25.777 26.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.145 4.145 3 C 0.098 3.902 4 H 0.012 0.988 5 C -0.634 4.634 6 H 0.074 0.926 7 C -0.179 4.179 8 N -0.546 5.546 9 Si 0.896 3.104 10 H -0.213 1.213 11 H -0.214 1.214 12 H -0.212 1.212 13 N -0.295 5.295 14 C -0.088 4.088 15 C 0.298 3.702 16 O -0.365 6.365 17 N -0.324 5.324 18 C 0.049 3.951 19 C -0.086 4.086 20 C -0.116 4.116 21 C 0.351 3.649 22 O -0.382 6.382 23 O -0.274 6.274 24 C -0.057 4.057 25 C -0.102 4.102 26 C -0.134 4.134 27 C -0.088 4.088 28 C -0.177 4.177 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.036 0.964 32 H 0.081 0.919 33 H 0.036 0.964 34 H 0.081 0.919 35 H 0.164 0.836 36 H 0.115 0.885 37 H 0.071 0.929 38 H 0.248 0.752 39 H 0.185 0.815 40 H 0.083 0.917 41 H 0.120 0.880 42 H 0.082 0.918 43 H 0.155 0.845 44 H 0.152 0.848 45 H 0.095 0.905 46 H 0.094 0.906 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.824 4.658 23.820 24.285 hybrid contribution 1.049 0.532 1.456 1.872 sum 0.225 5.191 25.276 25.805 Atomic orbital electron populations 1.21432 0.96384 0.97664 1.02388 1.21505 0.96506 0.98054 0.98448 1.19286 0.92478 0.91595 0.86876 0.98782 1.22005 1.31990 1.17741 0.91617 0.92589 1.25697 0.95570 0.95504 1.01143 1.70774 1.23233 1.26999 1.33620 0.83568 0.75959 0.75594 0.75322 1.21320 1.21448 1.21215 1.60324 1.44948 1.18797 1.05471 1.21807 0.95362 1.01256 0.90383 1.21388 0.85378 0.79098 0.84290 1.90672 1.20303 1.41168 1.84331 1.43706 1.19523 1.62514 1.06637 1.17461 0.97037 0.94659 0.85899 1.21745 0.94072 0.93047 0.99742 1.18912 0.99453 0.98594 0.94639 1.21194 0.80279 0.81394 0.82008 1.90893 1.60518 1.57140 1.29676 1.86515 1.53163 1.52396 1.35369 1.23282 0.90121 0.88734 1.03593 1.21357 0.96249 0.95701 0.96867 1.20786 0.97311 0.97657 0.97605 1.19952 0.99413 0.97588 0.91829 1.20830 0.97068 0.96242 1.03569 0.92700 0.92536 0.96429 0.91892 0.96431 0.91872 0.83573 0.88536 0.92882 0.75213 0.81519 0.91712 0.87998 0.91788 0.84522 0.84836 0.90533 0.90612 0.91192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.73 9.48 37.16 0.35 -2.38 16 2 C -0.11 -2.47 5.51 -26.73 -0.15 -2.62 16 3 C 0.21 4.93 1.94 -68.86 -0.13 4.80 16 4 H -0.01 -0.13 7.22 -51.92 -0.37 -0.51 16 5 C -0.60 -16.06 7.36 -34.44 -0.25 -16.32 16 6 H 0.06 1.55 7.61 -52.49 -0.40 1.15 16 7 C 0.03 0.70 5.23 -17.82 -0.09 0.61 16 8 N -0.91 -26.32 12.83 55.43 0.71 -25.61 16 9 Si 1.07 25.00 29.91 -169.99 -5.08 19.91 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 12 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 13 N -0.66 -13.99 4.99 -109.22 -0.54 -14.54 16 14 C 0.05 0.73 5.93 -4.98 -0.03 0.70 16 15 C 0.51 8.03 7.76 -10.99 -0.09 7.95 16 16 O -0.49 -9.72 13.33 5.56 0.07 -9.65 16 17 N -0.68 -7.95 4.90 -9.89 -0.05 -8.00 16 18 C 0.14 1.79 6.40 -83.74 -0.54 1.25 16 19 C -0.07 -0.97 8.31 -38.97 -0.32 -1.29 16 20 C -0.11 -1.48 5.87 -105.01 -0.62 -2.10 16 21 C 0.51 7.05 7.90 34.61 0.27 7.33 16 22 O -0.49 -8.53 16.13 -19.25 -0.31 -8.84 16 23 O -0.36 -3.94 9.81 -40.51 -0.40 -4.34 16 24 C 0.04 0.29 10.56 101.05 1.07 1.36 16 25 C -0.08 -0.80 9.61 -39.15 -0.38 -1.18 16 26 C -0.12 -0.96 9.67 -39.67 -0.38 -1.35 16 27 C -0.08 -0.79 5.90 -104.35 -0.62 -1.41 16 28 C -0.12 -0.75 9.44 36.00 0.34 -0.41 16 29 H 0.05 1.24 7.44 -51.93 -0.39 0.86 16 30 H 0.06 1.37 7.41 -51.93 -0.38 0.98 16 31 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 1.60 6.19 -51.93 -0.32 1.28 16 33 H 0.02 0.36 7.62 -51.93 -0.40 -0.03 16 34 H 0.27 7.72 6.08 -40.82 -0.25 7.47 16 35 H 0.35 7.65 8.06 -39.29 -0.32 7.34 16 36 H 0.10 1.46 7.59 -51.93 -0.39 1.06 16 37 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.41 3.39 7.53 -40.82 -0.31 3.08 16 39 H 0.17 2.99 5.26 -52.49 -0.28 2.71 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.14 1.04 7.61 -52.49 -0.40 0.64 16 44 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 45 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 47 H 0.07 0.44 7.03 -51.93 -0.37 0.08 16 LS Contribution 387.73 15.07 5.84 5.84 Total: -1.00 -33.89 387.73 -8.06 -41.95 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -6.74 Total: 8.32 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -1.56 Total: -5.06 kcal Atomic # 7 Polarization: -48.27 SS G_CDS: 0.12 Total: -48.15 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -0.63 Total: -22.82 kcal Atomic # 14 Polarization: 25.00 SS G_CDS: -5.08 Total: 19.91 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.89 -8.06 -41.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565173662.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.581 kcal (2) G-P(sol) polarization free energy of solvation -33.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds