Wall clock time and date at job start Tue Mar 31 2020 17:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47163 * 2 1 4 4 H 1.09010 * 109.47125 * 179.81207 * 3 2 1 5 5 C 1.50704 * 109.46970 * 299.80398 * 3 2 1 6 6 H 1.08002 * 119.99575 * 116.28248 * 5 3 2 7 7 C 1.37881 * 120.00211 * 296.28072 * 5 3 2 8 8 N 1.31511 * 119.99938 * 353.05051 * 7 5 3 9 9 Si 1.86798 * 119.99898 * 173.04928 * 7 5 3 10 10 H 1.48494 * 109.47361 * 270.00144 * 9 7 5 11 11 H 1.48499 * 109.47010 * 30.00299 * 9 7 5 12 12 H 1.48499 * 109.47010 * 149.99945 * 9 7 5 13 13 N 1.46898 * 109.47403 * 59.80888 * 3 2 1 14 14 C 1.46898 * 111.00138 * 88.37121 * 13 3 2 15 15 C 1.50699 * 109.46875 * 185.19611 * 14 13 3 16 16 O 1.21281 * 120.00322 * 359.97438 * 15 14 13 17 17 N 1.34776 * 119.99907 * 180.02562 * 15 14 13 18 18 C 1.39953 * 120.00153 * 184.38358 * 17 15 14 19 19 C 1.38626 * 119.99719 * 332.22848 * 18 17 15 20 20 C 1.39506 * 119.77259 * 179.97438 * 19 18 17 21 21 C 1.47735 * 120.11553 * 180.02562 * 20 19 18 22 22 O 1.21479 * 120.00173 * 0.02562 * 21 20 19 23 23 O 1.34706 * 120.00433 * 180.02562 * 21 20 19 24 24 C 1.45197 * 117.00506 * 180.02562 * 23 21 20 25 25 C 1.39664 * 119.77166 * 0.02562 * 20 19 18 26 26 C 1.37971 * 119.98875 * 359.97438 * 25 20 19 27 27 C 1.38264 * 120.22875 * 359.72527 * 26 25 20 28 28 C 1.50696 * 119.88625 * 180.27045 * 27 26 25 29 29 H 1.09005 * 109.46738 * 305.06952 * 1 2 3 30 30 H 1.09003 * 109.47196 * 65.06422 * 1 2 3 31 31 H 1.09003 * 109.47335 * 185.07007 * 1 2 3 32 32 H 1.09005 * 109.47194 * 239.99955 * 2 1 3 33 33 H 1.08997 * 109.47126 * 119.99814 * 2 1 3 34 34 H 0.97006 * 120.00177 * 355.47185 * 8 7 5 35 35 H 1.00899 * 110.99902 * 212.32560 * 13 3 2 36 36 H 1.09000 * 109.47240 * 305.19484 * 14 13 3 37 37 H 1.09003 * 109.46825 * 65.19774 * 14 13 3 38 38 H 0.97006 * 119.99801 * 4.38264 * 17 15 14 39 39 H 1.07994 * 120.10810 * 359.97438 * 19 18 17 40 40 H 1.09002 * 109.47432 * 59.99825 * 24 23 21 41 41 H 1.09006 * 109.47712 * 179.97438 * 24 23 21 42 42 H 1.09002 * 109.46828 * 299.99793 * 24 23 21 43 43 H 1.08001 * 120.00837 * 180.02562 * 25 20 19 44 44 H 1.07997 * 119.88778 * 180.02562 * 26 25 20 45 45 H 1.08998 * 109.47468 * 270.27916 * 28 27 26 46 46 H 1.08999 * 109.46812 * 30.28144 * 28 27 26 47 47 H 1.09007 * 109.47016 * 150.27471 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1301 1.4425 0.0034 5 6 1.5416 2.1515 -1.2329 6 1 0.8718 2.9934 -1.1380 7 6 1.9407 1.7254 -2.4820 8 7 2.8598 0.7917 -2.5956 9 14 1.1760 2.4744 -4.0129 10 1 -0.0233 1.6898 -4.4016 11 1 0.7798 3.8778 -3.7323 12 1 2.1635 2.4511 -5.1216 13 7 1.5466 2.1364 1.1971 14 6 2.4685 1.9576 2.3267 15 6 1.8700 2.5724 3.5656 16 8 0.7828 3.1073 3.5126 17 7 2.5434 2.5288 4.7322 18 6 1.9496 3.0174 5.9016 19 6 0.9952 4.0200 5.8276 20 6 0.4059 4.5031 6.9962 21 6 -0.6125 5.5710 6.9261 22 8 -0.9385 6.0297 5.8496 23 8 -1.1796 6.0362 8.0560 24 6 -2.1729 7.0854 7.9115 25 6 0.7821 3.9737 8.2327 26 6 1.7331 2.9760 8.2951 27 6 2.3124 2.4930 7.1363 28 6 3.3459 1.3989 7.2131 29 1 -0.3633 0.5905 0.8412 30 1 -0.3634 0.4333 -0.9319 31 1 -0.3634 -1.0237 0.0908 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.3040 0.4494 -1.8041 35 1 1.3906 3.1154 1.0091 36 1 2.6363 0.8937 2.4939 37 1 3.4175 2.4443 2.1017 38 1 3.4396 2.1588 4.7614 39 1 0.7088 4.4256 4.8686 40 1 -2.9975 6.7231 7.2976 41 1 -2.5492 7.3676 8.8948 42 1 -1.7180 7.9530 7.4335 43 1 0.3281 4.3446 9.1398 44 1 2.0225 2.5675 9.2521 45 1 4.3369 1.8416 7.3132 46 1 3.1416 0.7662 8.0768 47 1 3.3065 0.7976 6.3047 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565173662.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:54 Heat of formation + Delta-G solvation = -115.850075 kcal Electronic energy + Delta-G solvation = -28422.168216 eV Core-core repulsion = 24376.116757 eV Total energy + Delta-G solvation = -4046.051459 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.03273 -41.32648 -39.67812 -38.18089 -37.59782 -36.03348 -34.67138 -33.78845 -32.72178 -31.18303 -29.52108 -28.83193 -27.72210 -26.37374 -25.37474 -24.22911 -23.66101 -21.84050 -21.65771 -21.14499 -19.52461 -19.26255 -18.40591 -17.80458 -17.47784 -17.39722 -16.96455 -16.33358 -16.06911 -15.96344 -15.82841 -15.57695 -15.12606 -14.87199 -14.79636 -14.66546 -14.51472 -14.36872 -13.91530 -13.54326 -13.51079 -13.36947 -13.09426 -13.04955 -12.98503 -12.73247 -12.65896 -12.48921 -12.02542 -11.97123 -11.90622 -11.90032 -11.80242 -11.61890 -11.58316 -10.82079 -10.58467 -10.42444 -9.90646 -9.25242 -9.14751 -8.57541 -6.28875 -0.44278 0.22246 1.28193 1.53495 1.54242 1.56842 1.59829 1.77905 1.89531 2.56048 2.69353 3.19678 3.48953 3.58154 3.64436 3.82853 3.89216 4.11661 4.22454 4.26516 4.27122 4.27271 4.32533 4.37482 4.44078 4.56148 4.64259 4.70617 4.74235 4.82093 4.85639 5.00311 5.03518 5.16658 5.21919 5.22553 5.25854 5.33201 5.35837 5.39860 5.52373 5.68423 5.85140 5.86178 6.05658 6.27451 6.48088 6.54356 6.58947 6.75428 7.05591 7.46719 8.79890 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014010 B = 0.002573 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.131919 B =10880.993067 C =12351.676390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.101 4.101 3 C 0.211 3.789 4 H -0.021 1.021 5 C -0.603 4.603 6 H 0.041 0.959 7 C -0.017 4.017 8 N -0.930 5.930 9 Si 1.107 2.893 10 H -0.278 1.278 11 H -0.278 1.278 12 H -0.283 1.283 13 N -0.671 5.671 14 C 0.046 3.954 15 C 0.514 3.486 16 O -0.541 6.541 17 N -0.656 5.656 18 C 0.122 3.878 19 C -0.095 4.095 20 C -0.139 4.139 21 C 0.506 3.494 22 O -0.544 6.544 23 O -0.349 6.349 24 C 0.028 3.972 25 C -0.067 4.067 26 C -0.106 4.106 27 C -0.068 4.068 28 C -0.122 4.122 29 H 0.050 0.950 30 H 0.031 0.969 31 H 0.042 0.958 32 H 0.039 0.961 33 H 0.042 0.958 34 H 0.262 0.738 35 H 0.335 0.665 36 H 0.115 0.885 37 H 0.071 0.929 38 H 0.430 0.570 39 H 0.124 0.876 40 H 0.057 0.943 41 H 0.143 0.857 42 H 0.060 0.940 43 H 0.163 0.837 44 H 0.179 0.821 45 H 0.098 0.902 46 H 0.097 0.903 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.497 3.578 29.233 29.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.140 4.140 3 C 0.102 3.898 4 H -0.003 1.003 5 C -0.642 4.642 6 H 0.059 0.941 7 C -0.217 4.217 8 N -0.568 5.568 9 Si 0.930 3.070 10 H -0.203 1.203 11 H -0.204 1.204 12 H -0.209 1.209 13 N -0.302 5.302 14 C -0.086 4.086 15 C 0.302 3.698 16 O -0.416 6.416 17 N -0.303 5.303 18 C 0.027 3.973 19 C -0.116 4.116 20 C -0.141 4.141 21 C 0.353 3.647 22 O -0.436 6.436 23 O -0.265 6.265 24 C -0.065 4.065 25 C -0.086 4.086 26 C -0.124 4.124 27 C -0.071 4.071 28 C -0.178 4.178 29 H 0.069 0.931 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.152 0.848 36 H 0.133 0.867 37 H 0.089 0.911 38 H 0.270 0.730 39 H 0.142 0.858 40 H 0.075 0.925 41 H 0.161 0.839 42 H 0.079 0.921 43 H 0.181 0.819 44 H 0.196 0.804 45 H 0.116 0.884 46 H 0.116 0.884 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.190 3.470 27.355 27.575 hybrid contribution 0.765 0.925 0.590 1.337 sum 0.955 4.395 27.945 28.304 Atomic orbital electron populations 1.21316 0.95866 0.98920 1.00795 1.21403 0.96842 0.97299 0.98456 1.19107 0.91339 0.92193 0.87135 1.00329 1.22265 1.31315 1.17424 0.93175 0.94072 1.26843 0.95474 0.95419 1.03950 1.70868 1.24390 1.28238 1.33284 0.83042 0.75635 0.75602 0.72702 1.20344 1.20367 1.20865 1.60211 1.46553 1.17818 1.05620 1.21866 0.95022 1.02688 0.89056 1.21196 0.84832 0.78583 0.85155 1.90690 1.22481 1.43317 1.85122 1.43348 1.19903 1.61546 1.05542 1.17610 0.97583 0.95122 0.87007 1.21494 0.96301 0.95016 0.98766 1.18988 1.00127 0.99365 0.95600 1.21558 0.80067 0.81163 0.81925 1.90863 1.62288 1.58936 1.31464 1.86503 1.53370 1.52860 1.33799 1.23616 0.89179 0.87732 1.05971 1.21696 0.95730 0.95035 0.96115 1.21320 0.95708 0.96317 0.99014 1.20378 0.98912 0.97223 0.90541 1.20975 0.96879 0.95358 1.04601 0.93143 0.94980 0.93891 0.94207 0.93903 0.92706 0.84779 0.86703 0.91090 0.73033 0.85835 0.92457 0.83863 0.92122 0.81938 0.80398 0.88392 0.88378 0.91284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.01 9.48 71.98 0.68 -4.33 16 2 C -0.10 -4.69 5.51 30.59 0.17 -4.53 16 3 C 0.21 10.29 1.94 44.17 0.09 10.37 16 4 H -0.02 -1.06 7.22 -2.38 -0.02 -1.08 16 5 C -0.60 -33.39 7.36 25.60 0.19 -33.20 16 6 H 0.04 2.35 7.61 -2.91 -0.02 2.33 16 7 C -0.02 -0.96 5.23 84.66 0.44 -0.51 16 8 N -0.93 -54.60 12.83 21.45 0.28 -54.32 16 9 Si 1.11 50.91 29.91 68.60 2.05 52.96 16 10 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 11 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 13 N -0.67 -28.98 4.99 -499.45 -2.49 -31.47 16 14 C 0.05 1.50 5.93 85.56 0.51 2.00 16 15 C 0.51 16.50 7.76 87.66 0.68 17.18 16 16 O -0.54 -22.68 13.33 -3.03 -0.04 -22.72 16 17 N -0.66 -14.93 4.90 -303.61 -1.49 -16.41 16 18 C 0.12 2.91 6.40 38.11 0.24 3.16 16 19 C -0.10 -2.95 8.31 22.67 0.19 -2.76 16 20 C -0.14 -3.66 5.87 -20.12 -0.12 -3.78 16 21 C 0.51 14.76 7.90 70.33 0.56 15.32 16 22 O -0.54 -20.45 16.13 19.91 0.32 -20.13 16 23 O -0.35 -7.54 9.81 -56.16 -0.55 -8.09 16 24 C 0.03 0.44 10.56 113.37 1.20 1.64 16 25 C -0.07 -1.13 9.61 22.55 0.22 -0.91 16 26 C -0.11 -1.30 9.67 22.21 0.21 -1.09 16 27 C -0.07 -1.04 5.90 -19.69 -0.12 -1.16 16 28 C -0.12 -0.95 9.44 71.23 0.67 -0.28 16 29 H 0.05 2.29 7.44 -2.38 -0.02 2.27 16 30 H 0.03 1.56 7.41 -2.39 -0.02 1.54 16 31 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.04 2.03 6.19 -2.38 -0.01 2.01 16 33 H 0.04 1.74 7.62 -2.39 -0.02 1.72 16 34 H 0.26 15.33 6.08 -92.70 -0.56 14.77 16 35 H 0.33 15.56 8.06 -89.69 -0.72 14.83 16 36 H 0.12 3.28 7.59 -2.39 -0.02 3.26 16 37 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.43 6.19 7.53 -92.70 -0.70 5.50 16 39 H 0.12 4.95 5.26 -2.91 -0.02 4.93 16 40 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.14 1.02 8.14 -2.38 -0.02 1.00 16 42 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.16 1.85 7.61 -2.91 -0.02 1.83 16 44 H 0.18 0.71 8.06 -2.91 -0.02 0.69 16 45 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 46 H 0.10 0.41 8.08 -2.39 -0.02 0.39 16 47 H 0.07 0.60 7.03 -2.38 -0.02 0.58 16 Total: -1.00 -79.30 387.73 3.69 -75.62 By element: Atomic # 1 Polarization: 27.66 SS G_CDS: -0.20 Total: 27.46 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: 5.81 Total: -2.88 kcal Atomic # 7 Polarization: -98.50 SS G_CDS: -3.70 Total: -102.21 kcal Atomic # 8 Polarization: -50.67 SS G_CDS: -0.27 Total: -50.94 kcal Atomic # 14 Polarization: 50.91 SS G_CDS: 2.05 Total: 52.96 kcal Total: -79.30 3.69 -75.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565173662.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.235 kcal (2) G-P(sol) polarization free energy of solvation -79.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds