Wall clock time and date at job start Tue Mar 31 2020 17:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46979 * 2 1 4 4 H 1.09002 * 109.47374 * 185.55855 * 3 2 1 5 5 C 1.50706 * 109.46998 * 305.55698 * 3 2 1 6 6 H 1.08003 * 119.99602 * 116.65201 * 5 3 2 7 7 C 1.37871 * 120.00017 * 296.64990 * 5 3 2 8 8 N 1.31519 * 120.00309 * 352.46492 * 7 5 3 9 9 Si 1.86799 * 120.00105 * 172.46635 * 7 5 3 10 10 H 1.48499 * 109.47129 * 270.00046 * 9 7 5 11 11 H 1.48498 * 109.47330 * 29.99595 * 9 7 5 12 12 H 1.48498 * 109.47275 * 150.00029 * 9 7 5 13 13 N 1.46897 * 109.47473 * 65.55770 * 3 2 1 14 14 C 1.46902 * 110.99842 * 87.03578 * 13 3 2 15 15 C 1.50702 * 109.47008 * 184.04502 * 14 13 3 16 16 O 1.21279 * 120.00018 * 359.97438 * 15 14 13 17 17 N 1.34780 * 119.99881 * 179.97438 * 15 14 13 18 18 C 1.46490 * 120.00061 * 0.02562 * 17 15 14 19 19 C 1.39255 * 119.99886 * 179.97438 * 17 15 14 20 20 C 1.38852 * 120.16613 * 89.99847 * 19 17 15 21 21 C 1.38019 * 120.07390 * 179.97438 * 20 19 17 22 22 C 1.38577 * 120.41921 * 359.97438 * 21 20 19 23 23 C 1.37773 * 120.33688 * 0.02562 * 22 21 20 24 24 C 1.39752 * 119.91923 * 359.71812 * 23 22 21 25 25 C 1.47371 * 120.20923 * 180.25691 * 24 23 22 26 26 O 1.21505 * 120.00212 * 180.27939 * 25 24 23 27 27 O 1.34759 * 120.00005 * 0.27149 * 25 24 23 28 28 C 1.45202 * 117.00009 * 180.02562 * 27 25 24 29 29 H 1.09000 * 109.47134 * 303.33133 * 1 2 3 30 30 H 1.09006 * 109.46646 * 63.32582 * 1 2 3 31 31 H 1.08999 * 109.47029 * 183.32568 * 1 2 3 32 32 H 1.08996 * 109.47425 * 239.99400 * 2 1 3 33 33 H 1.09006 * 109.46704 * 119.99249 * 2 1 3 34 34 H 0.96999 * 119.99326 * 355.71050 * 8 7 5 35 35 H 1.00893 * 111.00170 * 323.07967 * 13 3 2 36 36 H 1.08995 * 109.47314 * 304.04542 * 14 13 3 37 37 H 1.09004 * 109.46974 * 64.05001 * 14 13 3 38 38 H 1.09003 * 109.47258 * 89.99795 * 18 17 15 39 39 H 1.09001 * 109.47227 * 209.99929 * 18 17 15 40 40 H 1.09000 * 109.47233 * 329.99938 * 18 17 15 41 41 H 1.08000 * 119.96296 * 359.97438 * 20 19 17 42 42 H 1.07999 * 119.78989 * 179.97438 * 21 20 19 43 43 H 1.08003 * 119.83282 * 180.02562 * 22 21 20 44 44 H 1.08006 * 120.04098 * 180.02562 * 23 22 21 45 45 H 1.08996 * 109.47376 * 300.00191 * 28 27 25 46 46 H 1.08994 * 109.46969 * 60.00389 * 28 27 25 47 47 H 1.08999 * 109.46901 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1255 1.4442 -0.0995 5 6 1.4284 2.1915 -1.1559 6 1 0.7766 3.0324 -0.9702 7 6 1.7010 1.8033 -2.4505 8 7 2.6068 0.8784 -2.6828 9 14 0.7839 2.5909 -3.8746 10 1 -0.4462 1.8107 -4.1632 11 1 0.4138 3.9834 -3.5154 12 1 1.6550 2.6047 -5.0772 13 7 1.6629 2.0952 1.2608 14 6 2.6719 1.8538 2.3009 15 6 2.2047 2.4524 3.6026 16 8 1.1367 3.0243 3.6583 17 7 2.9738 2.3522 4.7049 18 6 4.2641 1.6619 4.6375 19 6 2.5423 2.9058 5.9076 20 6 1.7864 2.1488 6.7927 21 6 1.3602 2.6993 7.9845 22 6 1.6820 4.0078 8.3078 23 6 2.4312 4.7744 7.4421 24 6 2.8747 4.2295 6.2340 25 6 3.6812 5.0419 5.3059 26 8 4.0605 4.5660 4.2543 27 8 3.9978 6.3127 5.6235 28 6 4.7943 7.0537 4.6618 29 1 -0.3633 0.5647 0.8586 30 1 -0.3633 0.4614 -0.9184 31 1 -0.3633 -1.0259 0.0596 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.1269 0.5140 -1.9496 35 1 0.7499 1.7929 1.5656 36 1 2.8157 0.7805 2.4254 37 1 3.6147 2.3150 2.0066 38 1 5.0455 2.3767 4.3793 39 1 4.4873 1.2135 5.6055 40 1 4.2196 0.8820 3.8773 41 1 1.5316 1.1281 6.5484 42 1 0.7721 2.1065 8.6694 43 1 1.3439 4.4289 9.2431 44 1 2.6796 5.7936 7.6991 45 1 5.7456 6.5443 4.5086 46 1 4.2576 7.1135 3.7150 47 1 4.9777 8.0593 5.0400 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566688206.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:11 Heat of formation + Delta-G solvation = -71.990895 kcal Electronic energy + Delta-G solvation = -29589.579097 eV Core-core repulsion = 25545.429515 eV Total energy + Delta-G solvation = -4044.149583 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.09126 -39.79925 -38.54691 -36.63416 -36.38626 -35.33178 -32.70182 -31.85581 -30.99272 -30.29129 -27.93035 -27.08774 -26.60374 -24.82272 -24.10771 -23.50186 -22.58071 -21.22357 -19.63375 -19.35643 -18.16257 -17.39946 -17.13573 -16.79112 -16.43976 -16.03594 -16.00465 -15.42005 -15.05263 -14.52470 -14.25165 -13.85896 -13.68384 -13.61218 -13.53296 -13.34280 -13.03050 -12.89653 -12.63517 -12.62943 -12.41542 -12.18861 -12.03646 -11.87565 -11.68621 -11.61039 -11.05144 -10.89841 -10.71228 -10.57631 -10.23909 -10.05381 -10.03544 -9.80835 -9.60955 -9.35907 -9.13056 -8.81439 -8.57958 -8.20897 -7.26795 -6.24455 -3.92074 0.40525 0.95686 2.40638 2.52737 2.83991 2.98767 3.44029 3.50536 3.54288 3.70631 4.45605 4.55692 4.59697 4.65021 4.85632 4.96460 4.97990 5.04266 5.06302 5.08537 5.19269 5.30471 5.36529 5.39253 5.44515 5.55264 5.67135 5.79510 5.83690 5.92955 6.02904 6.05154 6.14425 6.19191 6.25768 6.29665 6.36676 6.72068 6.79199 6.98767 7.04559 7.28809 7.31444 7.35991 7.65476 7.95287 8.33106 8.38360 8.52599 8.74414 8.99244 9.74743 11.11436 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014973 B = 0.003109 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.629540 B = 9004.744312 C = 9973.024308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.151 4.151 3 C 0.205 3.795 4 H 0.025 0.975 5 C -0.566 4.566 6 H 0.057 0.943 7 C 0.018 3.982 8 N -0.918 5.918 9 Si 1.067 2.933 10 H -0.289 1.289 11 H -0.289 1.289 12 H -0.287 1.287 13 N -0.661 5.661 14 C 0.050 3.950 15 C 0.532 3.468 16 O -0.517 6.517 17 N -0.582 5.582 18 C 0.085 3.915 19 C 0.215 3.785 20 C -0.124 4.124 21 C -0.077 4.077 22 C -0.133 4.133 23 C -0.058 4.058 24 C -0.124 4.124 25 C 0.504 3.496 26 O -0.481 6.481 27 O -0.360 6.360 28 C 0.038 3.962 29 H 0.037 0.963 30 H 0.069 0.931 31 H 0.026 0.974 32 H 0.070 0.930 33 H 0.018 0.982 34 H 0.267 0.733 35 H 0.337 0.663 36 H 0.046 0.954 37 H 0.098 0.902 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.079 0.921 41 H 0.134 0.866 42 H 0.133 0.867 43 H 0.134 0.866 44 H 0.141 0.859 45 H 0.063 0.937 46 H 0.066 0.934 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.141 4.313 24.697 25.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.191 4.191 3 C 0.097 3.903 4 H 0.042 0.958 5 C -0.605 4.605 6 H 0.075 0.925 7 C -0.185 4.185 8 N -0.555 5.555 9 Si 0.896 3.104 10 H -0.216 1.216 11 H -0.215 1.215 12 H -0.213 1.213 13 N -0.294 5.294 14 C -0.083 4.083 15 C 0.322 3.678 16 O -0.390 6.390 17 N -0.315 5.315 18 C -0.056 4.056 19 C 0.123 3.877 20 C -0.143 4.143 21 C -0.095 4.095 22 C -0.151 4.151 23 C -0.077 4.077 24 C -0.126 4.126 25 C 0.347 3.653 26 O -0.368 6.368 27 O -0.277 6.277 28 C -0.056 4.056 29 H 0.056 0.944 30 H 0.088 0.912 31 H 0.045 0.955 32 H 0.089 0.911 33 H 0.037 0.963 34 H 0.079 0.921 35 H 0.157 0.843 36 H 0.063 0.937 37 H 0.116 0.884 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.098 0.902 41 H 0.152 0.848 42 H 0.151 0.849 43 H 0.152 0.848 44 H 0.158 0.842 45 H 0.082 0.918 46 H 0.085 0.915 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.778 5.076 22.483 23.356 hybrid contribution 0.308 -0.847 1.777 1.992 sum 4.086 4.229 24.260 24.963 Atomic orbital electron populations 1.21553 0.96598 0.98262 1.02178 1.22222 0.96399 1.01069 0.99392 1.19373 0.95539 0.88579 0.86826 0.95752 1.21870 1.31205 1.16552 0.90876 0.92459 1.25698 0.97021 0.96138 0.99657 1.70785 1.21363 1.27495 1.35891 0.83569 0.75711 0.75622 0.75486 1.21582 1.21463 1.21316 1.60578 1.03394 1.63163 1.02255 1.21837 0.99159 0.97777 0.89493 1.21016 0.83570 0.78886 0.84365 1.90679 1.22486 1.41596 1.84287 1.45206 1.21378 1.57721 1.07243 1.21831 0.84178 0.96911 1.02714 1.17456 0.93858 0.89786 0.86573 1.21368 0.98172 1.00780 0.94013 1.21315 0.97079 0.95299 0.95838 1.21179 0.99342 0.94341 1.00240 1.21397 0.94504 1.00128 0.91646 1.19488 1.03454 0.93720 0.95984 1.20966 0.78318 0.80628 0.85372 1.90890 1.50216 1.71804 1.23900 1.86506 1.66641 1.25641 1.48907 1.23272 0.94604 0.95262 0.92418 0.94443 0.91154 0.95509 0.91144 0.96336 0.92139 0.84271 0.93653 0.88445 0.91659 0.91426 0.90199 0.84793 0.84872 0.84841 0.84164 0.91849 0.91508 0.88069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 9.39 37.16 0.35 -2.45 16 2 C -0.15 -3.50 5.46 -26.73 -0.15 -3.65 16 3 C 0.20 5.20 1.97 -68.86 -0.14 5.06 16 4 H 0.02 0.66 7.23 -51.93 -0.38 0.29 16 5 C -0.57 -16.10 7.33 -34.44 -0.25 -16.35 16 6 H 0.06 1.71 7.83 -52.48 -0.41 1.30 16 7 C 0.02 0.51 5.25 -17.82 -0.09 0.41 16 8 N -0.92 -27.28 12.90 55.43 0.72 -26.56 16 9 Si 1.07 25.83 29.91 -169.99 -5.08 20.75 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 N -0.66 -15.46 5.94 -109.22 -0.65 -16.11 16 14 C 0.05 0.97 4.51 -4.97 -0.02 0.95 16 15 C 0.53 10.03 6.77 -10.98 -0.07 9.96 16 16 O -0.52 -11.61 16.08 5.56 0.09 -11.53 16 17 N -0.58 -8.69 1.52 -120.60 -0.18 -8.88 16 18 C 0.09 0.98 9.88 59.84 0.59 1.57 16 19 C 0.21 2.94 4.44 -83.48 -0.37 2.57 16 20 C -0.12 -1.36 9.96 -39.43 -0.39 -1.75 16 21 C -0.08 -0.64 10.03 -39.54 -0.40 -1.03 16 22 C -0.13 -1.05 10.02 -39.63 -0.40 -1.45 16 23 C -0.06 -0.57 9.61 -39.19 -0.38 -0.95 16 24 C -0.12 -1.64 5.89 -104.83 -0.62 -2.26 16 25 C 0.50 7.43 7.89 34.45 0.27 7.70 16 26 O -0.48 -8.38 12.89 -19.27 -0.25 -8.63 16 27 O -0.36 -4.44 9.82 -40.65 -0.40 -4.83 16 28 C 0.04 0.37 10.57 101.05 1.07 1.44 16 29 H 0.04 0.78 6.34 -51.93 -0.33 0.45 16 30 H 0.07 1.68 7.20 -51.93 -0.37 1.31 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.07 1.78 6.26 -51.93 -0.32 1.46 16 33 H 0.02 0.38 7.45 -51.93 -0.39 -0.01 16 34 H 0.27 7.87 6.02 -40.82 -0.25 7.62 16 35 H 0.34 7.87 6.06 -39.30 -0.24 7.63 16 36 H 0.05 0.79 6.69 -51.93 -0.35 0.44 16 37 H 0.10 1.91 8.10 -51.93 -0.42 1.49 16 38 H 0.06 0.79 7.15 -51.93 -0.37 0.42 16 39 H 0.07 0.59 8.05 -51.93 -0.42 0.17 16 40 H 0.08 0.85 6.44 -51.93 -0.33 0.51 16 41 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 42 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 43 H 0.13 0.65 8.06 -52.48 -0.42 0.23 16 44 H 0.14 1.12 7.61 -52.48 -0.40 0.72 16 45 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 384.46 15.07 5.79 5.79 Total: -1.00 -35.78 384.46 -7.69 -43.47 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -6.73 Total: 6.76 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -1.00 Total: -0.23 kcal Atomic # 7 Polarization: -51.43 SS G_CDS: -0.12 Total: -51.55 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: -0.56 Total: -24.99 kcal Atomic # 14 Polarization: 25.83 SS G_CDS: -5.08 Total: 20.75 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.78 -7.69 -43.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566688206.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.520 kcal (2) G-P(sol) polarization free energy of solvation -35.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds