Wall clock time and date at job start Tue Mar 31 2020 17:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46979 * 2 1 4 4 H 1.09002 * 109.47374 * 185.55855 * 3 2 1 5 5 C 1.50706 * 109.46998 * 305.55698 * 3 2 1 6 6 H 1.08003 * 119.99602 * 116.65201 * 5 3 2 7 7 C 1.37871 * 120.00017 * 296.64990 * 5 3 2 8 8 N 1.31519 * 120.00309 * 352.46492 * 7 5 3 9 9 Si 1.86799 * 120.00105 * 172.46635 * 7 5 3 10 10 H 1.48499 * 109.47129 * 270.00046 * 9 7 5 11 11 H 1.48498 * 109.47330 * 29.99595 * 9 7 5 12 12 H 1.48498 * 109.47275 * 150.00029 * 9 7 5 13 13 N 1.46897 * 109.47473 * 65.55770 * 3 2 1 14 14 C 1.46902 * 110.99842 * 87.03578 * 13 3 2 15 15 C 1.50702 * 109.47008 * 184.04502 * 14 13 3 16 16 O 1.21279 * 120.00018 * 359.97438 * 15 14 13 17 17 N 1.34780 * 119.99881 * 179.97438 * 15 14 13 18 18 C 1.46490 * 120.00061 * 0.02562 * 17 15 14 19 19 C 1.39255 * 119.99886 * 179.97438 * 17 15 14 20 20 C 1.38852 * 120.16613 * 89.99847 * 19 17 15 21 21 C 1.38019 * 120.07390 * 179.97438 * 20 19 17 22 22 C 1.38577 * 120.41921 * 359.97438 * 21 20 19 23 23 C 1.37773 * 120.33688 * 0.02562 * 22 21 20 24 24 C 1.39752 * 119.91923 * 359.71812 * 23 22 21 25 25 C 1.47371 * 120.20923 * 180.25691 * 24 23 22 26 26 O 1.21505 * 120.00212 * 180.27939 * 25 24 23 27 27 O 1.34759 * 120.00005 * 0.27149 * 25 24 23 28 28 C 1.45202 * 117.00009 * 180.02562 * 27 25 24 29 29 H 1.09000 * 109.47134 * 303.33133 * 1 2 3 30 30 H 1.09006 * 109.46646 * 63.32582 * 1 2 3 31 31 H 1.08999 * 109.47029 * 183.32568 * 1 2 3 32 32 H 1.08996 * 109.47425 * 239.99400 * 2 1 3 33 33 H 1.09006 * 109.46704 * 119.99249 * 2 1 3 34 34 H 0.96999 * 119.99326 * 355.71050 * 8 7 5 35 35 H 1.00893 * 111.00170 * 323.07967 * 13 3 2 36 36 H 1.08995 * 109.47314 * 304.04542 * 14 13 3 37 37 H 1.09004 * 109.46974 * 64.05001 * 14 13 3 38 38 H 1.09003 * 109.47258 * 89.99795 * 18 17 15 39 39 H 1.09001 * 109.47227 * 209.99929 * 18 17 15 40 40 H 1.09000 * 109.47233 * 329.99938 * 18 17 15 41 41 H 1.08000 * 119.96296 * 359.97438 * 20 19 17 42 42 H 1.07999 * 119.78989 * 179.97438 * 21 20 19 43 43 H 1.08003 * 119.83282 * 180.02562 * 22 21 20 44 44 H 1.08006 * 120.04098 * 180.02562 * 23 22 21 45 45 H 1.08996 * 109.47376 * 300.00191 * 28 27 25 46 46 H 1.08994 * 109.46969 * 60.00389 * 28 27 25 47 47 H 1.08999 * 109.46901 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1255 1.4442 -0.0995 5 6 1.4284 2.1915 -1.1559 6 1 0.7766 3.0324 -0.9702 7 6 1.7010 1.8033 -2.4505 8 7 2.6068 0.8784 -2.6828 9 14 0.7839 2.5909 -3.8746 10 1 -0.4462 1.8107 -4.1632 11 1 0.4138 3.9834 -3.5154 12 1 1.6550 2.6047 -5.0772 13 7 1.6629 2.0952 1.2608 14 6 2.6719 1.8538 2.3009 15 6 2.2047 2.4524 3.6026 16 8 1.1367 3.0243 3.6583 17 7 2.9738 2.3522 4.7049 18 6 4.2641 1.6619 4.6375 19 6 2.5423 2.9058 5.9076 20 6 1.7864 2.1488 6.7927 21 6 1.3602 2.6993 7.9845 22 6 1.6820 4.0078 8.3078 23 6 2.4312 4.7744 7.4421 24 6 2.8747 4.2295 6.2340 25 6 3.6812 5.0419 5.3059 26 8 4.0605 4.5660 4.2543 27 8 3.9978 6.3127 5.6235 28 6 4.7943 7.0537 4.6618 29 1 -0.3633 0.5647 0.8586 30 1 -0.3633 0.4614 -0.9184 31 1 -0.3633 -1.0259 0.0596 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.1269 0.5140 -1.9496 35 1 0.7499 1.7929 1.5656 36 1 2.8157 0.7805 2.4254 37 1 3.6147 2.3150 2.0066 38 1 5.0455 2.3767 4.3793 39 1 4.4873 1.2135 5.6055 40 1 4.2196 0.8820 3.8773 41 1 1.5316 1.1281 6.5484 42 1 0.7721 2.1065 8.6694 43 1 1.3439 4.4289 9.2431 44 1 2.6796 5.7936 7.6991 45 1 5.7456 6.5443 4.5086 46 1 4.2576 7.1135 3.7150 47 1 4.9777 8.0593 5.0400 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566688206.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:10 Heat of formation + Delta-G solvation = -94.772461 kcal Electronic energy + Delta-G solvation = -29590.566980 eV Core-core repulsion = 25545.429515 eV Total energy + Delta-G solvation = -4045.137465 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.14926 -40.98973 -39.60791 -38.36473 -37.56957 -36.54558 -34.67134 -32.71009 -32.64120 -31.42662 -28.92097 -28.64703 -27.71570 -26.58356 -25.47985 -25.02503 -23.60216 -22.25343 -21.48752 -20.63357 -19.18741 -18.97789 -18.39724 -17.90592 -17.70972 -17.40235 -17.21370 -16.63062 -16.01229 -15.81844 -15.67027 -15.48086 -15.29609 -15.03061 -14.63856 -14.57344 -14.46741 -14.09886 -13.95763 -13.67917 -13.56637 -13.47541 -13.31664 -13.19912 -13.09407 -12.90066 -12.62861 -12.45532 -12.12188 -11.97090 -11.93876 -11.89228 -11.70923 -11.66153 -11.11264 -10.65836 -10.39059 -10.14882 -9.98141 -9.93706 -9.11670 -8.52392 -6.20792 -0.46658 0.18412 1.42199 1.44824 1.53466 1.59697 1.61313 1.79636 1.82783 2.58505 2.63564 3.23052 3.43818 3.60390 3.60742 3.81337 4.01452 4.04681 4.17069 4.22262 4.23611 4.25423 4.30649 4.31787 4.33092 4.37017 4.41896 4.51589 4.55944 4.61621 4.76330 4.82542 4.89197 5.04257 5.14927 5.15835 5.17910 5.30160 5.36539 5.37314 5.50552 5.52197 5.83452 5.92418 6.07693 6.18980 6.50960 6.60147 6.61251 6.78751 7.06355 7.52287 8.83816 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014973 B = 0.003109 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.629540 B = 9004.744312 C = 9973.024308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.142 4.142 3 C 0.210 3.790 4 H 0.001 0.999 5 C -0.579 4.579 6 H 0.036 0.964 7 C -0.023 4.023 8 N -0.935 5.935 9 Si 1.108 2.892 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.284 1.284 13 N -0.677 5.677 14 C 0.054 3.946 15 C 0.532 3.468 16 O -0.563 6.563 17 N -0.570 5.570 18 C 0.081 3.919 19 C 0.177 3.823 20 C -0.133 4.133 21 C -0.064 4.064 22 C -0.120 4.120 23 C -0.056 4.056 24 C -0.154 4.154 25 C 0.497 3.503 26 O -0.523 6.523 27 O -0.356 6.356 28 C 0.033 3.967 29 H 0.044 0.956 30 H 0.043 0.957 31 H 0.055 0.945 32 H 0.047 0.953 33 H 0.044 0.956 34 H 0.259 0.741 35 H 0.337 0.663 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.054 0.946 39 H 0.099 0.901 40 H 0.087 0.913 41 H 0.141 0.859 42 H 0.171 0.829 43 H 0.175 0.825 44 H 0.157 0.843 45 H 0.064 0.936 46 H 0.047 0.953 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.306 4.105 27.699 28.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.181 4.181 3 C 0.101 3.899 4 H 0.018 0.982 5 C -0.617 4.617 6 H 0.054 0.946 7 C -0.221 4.221 8 N -0.573 5.573 9 Si 0.932 3.068 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.209 1.209 13 N -0.310 5.310 14 C -0.078 4.078 15 C 0.322 3.678 16 O -0.441 6.441 17 N -0.300 5.300 18 C -0.060 4.060 19 C 0.086 3.914 20 C -0.152 4.152 21 C -0.082 4.082 22 C -0.138 4.138 23 C -0.075 4.075 24 C -0.156 4.156 25 C 0.343 3.657 26 O -0.413 6.413 27 O -0.272 6.272 28 C -0.060 4.060 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.157 0.843 36 H 0.089 0.911 37 H 0.106 0.894 38 H 0.073 0.927 39 H 0.117 0.883 40 H 0.105 0.895 41 H 0.159 0.841 42 H 0.189 0.811 43 H 0.192 0.808 44 H 0.175 0.825 45 H 0.083 0.917 46 H 0.065 0.935 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 2.984 4.865 25.552 26.182 hybrid contribution 0.630 -0.714 1.036 1.407 sum 3.615 4.150 26.588 27.151 Atomic orbital electron populations 1.21464 0.95367 0.99951 1.01105 1.22059 0.97411 0.99231 0.99444 1.19167 0.93764 0.89857 0.87091 0.98157 1.22071 1.30918 1.16290 0.92442 0.94603 1.26907 0.97064 0.96003 1.02151 1.70883 1.22262 1.28576 1.35588 0.83025 0.75366 0.75409 0.73012 1.19779 1.20762 1.20929 1.60397 1.04292 1.63581 1.02766 1.21771 0.97535 0.99326 0.89188 1.20786 0.83421 0.78528 0.85045 1.90638 1.24476 1.43832 1.85110 1.45053 1.21424 1.56605 1.06920 1.22026 0.82520 0.96633 1.04810 1.17828 0.96158 0.90740 0.86630 1.21557 0.97846 1.01105 0.94679 1.21789 0.95742 0.95722 0.94955 1.21673 0.97309 0.93860 1.00916 1.21691 0.94103 1.01131 0.90573 1.19635 1.04929 0.93708 0.97370 1.21483 0.77850 0.81184 0.85164 1.90859 1.52117 1.72679 1.25638 1.86502 1.66683 1.24825 1.49235 1.23517 0.93915 0.96898 0.91672 0.93733 0.93751 0.92583 0.93433 0.93715 0.93044 0.84304 0.91124 0.89352 0.92695 0.88267 0.89471 0.84117 0.81117 0.80800 0.82489 0.91741 0.93452 0.84152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.23 9.39 71.98 0.68 -4.55 16 2 C -0.14 -6.58 5.46 30.59 0.17 -6.42 16 3 C 0.21 10.94 1.97 44.17 0.09 11.03 16 4 H 0.00 0.03 7.23 -2.39 -0.02 0.02 16 5 C -0.58 -33.87 7.33 25.60 0.19 -33.69 16 6 H 0.04 2.21 7.83 -2.91 -0.02 2.18 16 7 C -0.02 -1.33 5.25 84.65 0.44 -0.89 16 8 N -0.93 -56.60 12.90 21.45 0.28 -56.32 16 9 Si 1.11 52.53 29.91 68.60 2.05 54.58 16 10 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 13 N -0.68 -32.63 5.94 -499.45 -2.97 -35.60 16 14 C 0.05 2.15 4.51 85.56 0.39 2.53 16 15 C 0.53 20.64 6.77 87.66 0.59 21.23 16 16 O -0.56 -26.12 16.08 -3.03 -0.05 -26.17 16 17 N -0.57 -17.17 1.52 -653.86 -0.99 -18.16 16 18 C 0.08 1.84 9.88 127.77 1.26 3.10 16 19 C 0.18 4.77 4.44 38.62 0.17 4.94 16 20 C -0.13 -2.64 9.96 22.36 0.22 -2.41 16 21 C -0.06 -0.81 10.03 22.30 0.22 -0.59 16 22 C -0.12 -1.40 10.02 22.24 0.22 -1.18 16 23 C -0.06 -0.99 9.61 22.53 0.22 -0.77 16 24 C -0.15 -4.02 5.89 -20.00 -0.12 -4.14 16 25 C 0.50 15.11 7.89 70.23 0.55 15.66 16 26 O -0.52 -19.24 12.89 19.82 0.26 -18.99 16 27 O -0.36 -8.78 9.82 -56.70 -0.56 -9.33 16 28 C 0.03 0.65 10.57 113.37 1.20 1.85 16 29 H 0.04 1.83 6.34 -2.39 -0.02 1.81 16 30 H 0.04 2.12 7.20 -2.38 -0.02 2.10 16 31 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.05 2.43 6.26 -2.39 -0.01 2.41 16 33 H 0.04 1.81 7.45 -2.38 -0.02 1.79 16 34 H 0.26 15.71 6.02 -92.71 -0.56 15.15 16 35 H 0.34 16.06 6.06 -89.70 -0.54 15.52 16 36 H 0.07 2.43 6.69 -2.39 -0.02 2.41 16 37 H 0.09 3.64 8.10 -2.39 -0.02 3.62 16 38 H 0.05 1.38 7.15 -2.39 -0.02 1.36 16 39 H 0.10 1.60 8.05 -2.39 -0.02 1.58 16 40 H 0.09 1.81 6.44 -2.39 -0.02 1.79 16 41 H 0.14 2.50 8.06 -2.91 -0.02 2.48 16 42 H 0.17 0.90 8.06 -2.91 -0.02 0.87 16 43 H 0.17 0.67 8.06 -2.91 -0.02 0.65 16 44 H 0.16 2.11 7.61 -2.91 -0.02 2.09 16 45 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.05 1.11 8.14 -2.39 -0.02 1.10 16 47 H 0.14 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -81.81 384.46 5.17 -76.64 By element: Atomic # 1 Polarization: 26.99 SS G_CDS: 0.66 Total: 27.64 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: 6.49 Total: 5.71 kcal Atomic # 7 Polarization: -106.40 SS G_CDS: -3.68 Total: -110.08 kcal Atomic # 8 Polarization: -54.14 SS G_CDS: -0.35 Total: -54.49 kcal Atomic # 14 Polarization: 52.53 SS G_CDS: 2.05 Total: 54.58 kcal Total: -81.81 5.17 -76.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566688206.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.137 kcal (2) G-P(sol) polarization free energy of solvation -81.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds