Wall clock time and date at job start Tue Mar 31 2020 17:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46847 * 110.99897 * 2 1 4 4 C 1.53034 * 109.51345 * 174.16738 * 3 2 1 5 5 C 1.53099 * 109.29509 * 59.18740 * 4 3 2 6 6 O 1.42902 * 109.57562 * 62.26828 * 5 4 3 7 7 C 1.52993 * 109.52781 * 182.43453 * 5 4 3 8 8 N 1.46498 * 109.47462 * 304.67567 * 7 5 4 9 9 S 1.65601 * 120.00019 * 164.99896 * 8 7 5 10 10 O 1.42098 * 104.27470 * 181.07355 * 9 8 7 11 11 O 1.42102 * 104.27866 * 308.92793 * 9 8 7 12 12 C 1.81398 * 104.44808 * 65.00217 * 9 8 7 13 13 C 1.53005 * 109.47080 * 179.97438 * 12 9 8 14 14 C 1.52995 * 109.47186 * 300.00495 * 13 12 9 15 15 C 1.53008 * 109.46541 * 59.99984 * 13 12 9 16 16 C 1.50692 * 109.47124 * 179.97438 * 13 12 9 17 17 H 1.07995 * 120.00170 * 0.02562 * 16 13 12 18 18 C 1.37878 * 120.00242 * 180.02562 * 16 13 12 19 19 N 1.31516 * 119.99539 * 0.02562 * 18 16 13 20 20 Si 1.86803 * 120.00400 * 180.02562 * 18 16 13 21 21 H 1.48494 * 109.46858 * 0.02562 * 20 18 16 22 22 H 1.48493 * 109.46995 * 120.00178 * 20 18 16 23 23 H 1.48501 * 109.46838 * 240.00148 * 20 18 16 24 24 C 1.53126 * 109.15071 * 302.33888 * 5 4 3 25 25 C 1.46854 * 110.99958 * 235.79138 * 2 1 3 26 26 H 1.09005 * 109.46873 * 60.00145 * 1 2 3 27 27 H 1.09004 * 109.47265 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47576 * 299.99893 * 1 2 3 29 29 H 1.09002 * 109.46481 * 294.17890 * 3 2 1 30 30 H 1.08994 * 109.46283 * 54.15743 * 3 2 1 31 31 H 1.09007 * 109.50453 * 179.12106 * 4 3 2 32 32 H 1.09009 * 109.50412 * 299.23146 * 4 3 2 33 33 H 0.96698 * 113.99289 * 60.29531 * 6 5 4 34 34 H 1.09010 * 109.47064 * 64.68133 * 7 5 4 35 35 H 1.08999 * 109.47221 * 184.67320 * 7 5 4 36 36 H 0.96999 * 119.99465 * 345.00574 * 8 7 5 37 37 H 1.08998 * 109.47432 * 299.99904 * 12 9 8 38 38 H 1.08997 * 109.46847 * 59.99827 * 12 9 8 39 39 H 1.08999 * 109.47476 * 59.99557 * 14 13 12 40 40 H 1.08998 * 109.47058 * 180.02562 * 14 13 12 41 41 H 1.09007 * 109.46664 * 299.99552 * 14 13 12 42 42 H 1.08998 * 109.46975 * 60.00280 * 15 13 12 43 43 H 1.08998 * 109.46447 * 179.97438 * 15 13 12 44 44 H 1.08999 * 109.47291 * 299.99935 * 15 13 12 45 45 H 0.97005 * 119.99637 * 179.97438 * 19 18 16 46 46 H 1.08994 * 109.50076 * 297.71308 * 24 5 4 47 47 H 1.09000 * 109.50123 * 177.59308 * 24 5 4 48 48 H 1.08993 * 109.46229 * 305.85774 * 25 2 1 49 49 H 1.09008 * 109.45803 * 65.83386 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3339 0.1466 5 6 4.1188 0.5371 -1.0144 6 8 3.8183 1.1901 -2.2495 7 6 5.6361 0.4451 -0.8406 8 7 6.1959 1.7930 -0.7148 9 16 7.7390 1.9994 -0.1505 10 8 7.9232 3.4084 -0.1413 11 8 7.7747 1.2481 1.0552 12 6 8.7894 1.2282 -1.4125 13 6 10.2576 1.3556 -1.0014 14 6 10.6233 2.8352 -0.8679 15 6 10.4741 0.6538 0.3409 16 6 11.1301 0.7145 -2.0494 17 1 10.6824 0.2618 -2.9217 18 6 12.5002 0.7057 -1.8948 19 7 13.0455 1.2566 -0.8323 20 14 13.5819 -0.0885 -3.1943 21 1 12.7302 -0.6318 -4.2826 22 1 14.5106 0.9266 -3.7531 23 1 14.3647 -1.1910 -2.5804 24 6 3.5181 -0.8714 -1.0209 25 6 1.9952 -0.7708 -1.1338 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.7324 1.8609 -0.9376 30 1 1.5636 1.9256 0.8331 31 1 3.9100 2.3510 0.1309 32 1 3.7813 0.8565 1.0905 33 1 4.1692 2.0888 -2.3146 34 1 5.8648 -0.1287 0.0577 35 1 6.0719 -0.0498 -1.7084 36 1 5.6625 2.5646 -0.9620 37 1 8.5285 0.1742 -1.5078 38 1 8.6354 1.7285 -2.3685 39 1 9.9922 3.2986 -0.1097 40 1 11.6694 2.9260 -0.5755 41 1 10.4691 3.3352 -1.8242 42 1 10.2135 -0.4003 0.2459 43 1 11.5201 0.7441 0.6335 44 1 9.8429 1.1171 1.0992 45 1 14.0093 1.2501 -0.7233 46 1 3.7814 -1.3835 -0.0955 47 1 3.9099 -1.4302 -1.8709 48 1 1.5634 -1.7715 -1.1243 49 1 1.7325 -0.2706 -2.0661 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566984695.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:05 Heat of formation + Delta-G solvation = -123.711680 kcal Electronic energy + Delta-G solvation = -28815.107814 eV Core-core repulsion = 24904.159401 eV Total energy + Delta-G solvation = -3910.948413 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.13334 -37.00455 -36.55830 -36.29683 -35.35254 -34.38253 -32.26381 -31.68477 -31.16454 -27.79562 -26.65855 -25.73787 -25.25801 -24.86840 -23.53220 -21.95044 -20.07612 -19.68752 -18.88118 -17.63696 -16.75320 -16.53705 -15.93398 -15.69439 -15.43773 -15.29271 -15.03954 -14.77173 -14.73977 -14.48270 -13.85847 -13.65443 -13.18855 -13.09416 -12.94503 -12.75945 -12.53153 -12.41805 -12.14109 -12.02849 -11.79086 -11.64492 -11.50203 -11.45039 -11.34790 -11.14659 -11.09721 -10.94425 -10.73893 -10.54228 -10.37761 -10.30340 -10.15274 -10.07616 -9.68872 -9.66481 -9.31078 -8.69341 -8.59151 -8.42290 -6.05411 -4.17361 0.81313 3.12981 3.23765 3.32345 3.34935 3.62508 3.94671 4.22422 4.33921 4.38077 4.45360 4.53306 4.75261 4.85216 4.98971 5.05814 5.16426 5.20017 5.22422 5.25539 5.31709 5.42155 5.51291 5.55008 5.57037 5.59670 5.66949 5.71576 5.77751 5.84421 5.92591 6.03311 6.35385 6.68018 6.76624 6.77357 6.78651 6.87654 6.92831 7.03568 7.29442 7.37214 7.48168 7.66267 7.96216 8.07712 8.31030 8.81507 9.48291 10.95957 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023822 B = 0.002864 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.108163 B = 9773.305767 C =10335.930737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.545 5.545 3 C 0.059 3.941 4 C -0.143 4.143 5 C 0.129 3.871 6 O -0.554 6.554 7 C 0.090 3.910 8 N -1.130 6.130 9 S 2.595 3.405 10 O -0.965 6.965 11 O -0.962 6.962 12 C -0.581 4.581 13 C 0.082 3.918 14 C -0.164 4.164 15 C -0.164 4.164 16 C -0.501 4.501 17 H 0.059 0.941 18 C 0.064 3.936 19 N -0.883 5.883 20 Si 0.896 3.104 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.283 1.283 24 C -0.103 4.103 25 C 0.059 3.941 26 H 0.024 0.976 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.040 0.960 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.374 0.626 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.406 0.594 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.027 0.973 40 H 0.095 0.905 41 H 0.036 0.964 42 H 0.036 0.964 43 H 0.095 0.905 44 H 0.028 0.972 45 H 0.262 0.738 46 H 0.089 0.911 47 H 0.080 0.920 48 H 0.074 0.926 49 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.859 -1.765 -0.482 21.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.269 5.269 3 C -0.069 4.069 4 C -0.181 4.181 5 C 0.087 3.913 6 O -0.360 6.360 7 C -0.037 4.037 8 N -0.888 5.888 9 S 2.693 3.307 10 O -0.955 6.955 11 O -0.952 6.952 12 C -0.715 4.715 13 C 0.080 3.920 14 C -0.222 4.222 15 C -0.222 4.222 16 C -0.541 4.541 17 H 0.077 0.923 18 C -0.138 4.138 19 N -0.522 5.522 20 Si 0.724 3.276 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.209 1.209 24 C -0.141 4.141 25 C -0.069 4.069 26 H 0.042 0.958 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.058 0.942 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.105 0.895 33 H 0.222 0.778 34 H 0.109 0.891 35 H 0.093 0.907 36 H 0.239 0.761 37 H 0.135 0.865 38 H 0.137 0.863 39 H 0.046 0.954 40 H 0.114 0.886 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.114 0.886 44 H 0.047 0.953 45 H 0.072 0.928 46 H 0.107 0.893 47 H 0.098 0.902 48 H 0.093 0.907 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -21.524 -2.258 0.797 21.657 hybrid contribution 0.479 0.503 -2.090 2.202 sum -21.045 -1.754 -1.293 21.158 Atomic orbital electron populations 1.22331 0.87340 1.02004 1.00560 1.61959 1.07532 1.13920 1.43540 1.22018 0.94973 0.89198 1.00689 1.22257 0.94951 1.01101 0.99820 1.21403 0.91929 0.93821 0.84133 1.86545 1.79852 1.32428 1.37161 1.22002 0.94602 0.83949 1.03185 1.55877 1.34101 1.12886 1.85930 1.05610 0.73073 0.75071 0.76963 1.93555 1.84429 1.30002 1.87529 1.93543 1.85233 1.73649 1.42776 1.30513 1.13225 1.11914 1.15811 1.17933 0.84724 0.94254 0.95120 1.22279 1.05049 0.95704 0.99152 1.22280 1.04900 0.98904 0.96089 1.20978 0.90739 1.36888 1.05480 0.92257 1.24946 0.97979 0.95198 0.95666 1.69814 1.11110 1.44144 1.27093 0.86476 0.80469 0.79099 0.81586 1.19835 1.20958 1.20935 1.21586 0.94922 0.93941 1.03690 1.22007 0.94828 0.98104 0.91915 0.95768 0.91399 0.91421 0.94218 0.90816 0.90835 0.89507 0.77794 0.89125 0.90688 0.76077 0.86472 0.86259 0.95380 0.88631 0.94472 0.94465 0.88639 0.95325 0.92785 0.89250 0.90172 0.90721 0.93867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.59 60.06 0.58 0.76 16 2 N -0.54 -4.90 4.91 -242.95 -1.19 -6.09 16 3 C 0.06 0.52 5.33 -3.84 -0.02 0.50 16 4 C -0.14 -1.34 4.81 -26.66 -0.13 -1.47 16 5 C 0.13 1.23 0.72 -90.51 -0.07 1.16 16 6 O -0.55 -5.25 11.85 -35.23 -0.42 -5.67 16 7 C 0.09 0.98 5.31 -4.05 -0.02 0.96 16 8 N -1.13 -13.79 5.27 -10.61 -0.06 -13.85 16 9 S 2.59 45.57 4.49 -107.50 -0.48 45.09 16 10 O -0.96 -19.45 15.70 -57.54 -0.90 -20.36 16 11 O -0.96 -19.41 15.12 -57.54 -0.87 -20.28 16 12 C -0.58 -10.96 5.01 37.16 0.19 -10.78 16 13 C 0.08 1.96 0.52 -155.66 -0.08 1.88 16 14 C -0.16 -4.00 7.78 37.15 0.29 -3.72 16 15 C -0.16 -3.99 7.77 37.16 0.29 -3.70 16 16 C -0.50 -13.04 8.01 -34.44 -0.28 -13.32 16 17 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 18 C 0.06 1.69 5.15 -17.82 -0.09 1.60 16 19 N -0.88 -23.99 9.35 55.43 0.52 -23.47 16 20 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 21 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 C -0.10 -0.92 5.11 -26.65 -0.14 -1.05 16 25 C 0.06 0.52 5.33 -3.83 -0.02 0.50 16 26 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 27 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.04 0.36 7.76 -51.93 -0.40 -0.04 16 30 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 31 H 0.07 0.64 7.00 -51.93 -0.36 0.28 16 32 H 0.09 0.90 8.14 -51.92 -0.42 0.47 16 33 H 0.37 2.66 7.92 45.56 0.36 3.02 16 34 H 0.09 1.04 7.70 -51.92 -0.40 0.64 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.41 3.99 6.71 -34.48 -0.23 3.76 16 37 H 0.12 1.99 8.14 -51.92 -0.42 1.57 16 38 H 0.12 2.05 8.14 -51.93 -0.42 1.63 16 39 H 0.03 0.65 5.46 -51.93 -0.28 0.36 16 40 H 0.10 2.52 6.07 -51.93 -0.32 2.20 16 41 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.10 2.51 6.07 -51.93 -0.31 2.20 16 44 H 0.03 0.66 5.46 -51.93 -0.28 0.37 16 45 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 46 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 49 H 0.04 0.42 7.76 -51.92 -0.40 0.02 16 LS Contribution 377.67 15.07 5.69 5.69 Total: -1.00 -32.23 377.67 -9.90 -42.13 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -7.67 Total: 7.98 kcal Atomic # 6 Polarization: -27.17 SS G_CDS: 0.50 Total: -26.67 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: -0.73 Total: -43.42 kcal Atomic # 8 Polarization: -44.12 SS G_CDS: -2.19 Total: -46.31 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: 45.57 SS G_CDS: -0.48 Total: 45.09 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.23 -9.90 -42.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566984695.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.577 kcal (2) G-P(sol) polarization free energy of solvation -32.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds