Wall clock time and date at job start Tue Mar 31 2020 17:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46847 * 110.99897 * 2 1 4 4 C 1.53034 * 109.51345 * 174.16738 * 3 2 1 5 5 C 1.53099 * 109.29509 * 59.18740 * 4 3 2 6 6 O 1.42902 * 109.57562 * 62.26828 * 5 4 3 7 7 C 1.52993 * 109.52781 * 182.43453 * 5 4 3 8 8 N 1.46498 * 109.47462 * 304.67567 * 7 5 4 9 9 S 1.65601 * 120.00019 * 164.99896 * 8 7 5 10 10 O 1.42098 * 104.27470 * 181.07355 * 9 8 7 11 11 O 1.42102 * 104.27866 * 308.92793 * 9 8 7 12 12 C 1.81398 * 104.44808 * 65.00217 * 9 8 7 13 13 C 1.53005 * 109.47080 * 179.97438 * 12 9 8 14 14 C 1.52995 * 109.47186 * 300.00495 * 13 12 9 15 15 C 1.53008 * 109.46541 * 59.99984 * 13 12 9 16 16 C 1.50692 * 109.47124 * 179.97438 * 13 12 9 17 17 H 1.07995 * 120.00170 * 0.02562 * 16 13 12 18 18 C 1.37878 * 120.00242 * 180.02562 * 16 13 12 19 19 N 1.31516 * 119.99539 * 0.02562 * 18 16 13 20 20 Si 1.86803 * 120.00400 * 180.02562 * 18 16 13 21 21 H 1.48494 * 109.46858 * 0.02562 * 20 18 16 22 22 H 1.48493 * 109.46995 * 120.00178 * 20 18 16 23 23 H 1.48501 * 109.46838 * 240.00148 * 20 18 16 24 24 C 1.53126 * 109.15071 * 302.33888 * 5 4 3 25 25 C 1.46854 * 110.99958 * 235.79138 * 2 1 3 26 26 H 1.09005 * 109.46873 * 60.00145 * 1 2 3 27 27 H 1.09004 * 109.47265 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47576 * 299.99893 * 1 2 3 29 29 H 1.09002 * 109.46481 * 294.17890 * 3 2 1 30 30 H 1.08994 * 109.46283 * 54.15743 * 3 2 1 31 31 H 1.09007 * 109.50453 * 179.12106 * 4 3 2 32 32 H 1.09009 * 109.50412 * 299.23146 * 4 3 2 33 33 H 0.96698 * 113.99289 * 60.29531 * 6 5 4 34 34 H 1.09010 * 109.47064 * 64.68133 * 7 5 4 35 35 H 1.08999 * 109.47221 * 184.67320 * 7 5 4 36 36 H 0.96999 * 119.99465 * 345.00574 * 8 7 5 37 37 H 1.08998 * 109.47432 * 299.99904 * 12 9 8 38 38 H 1.08997 * 109.46847 * 59.99827 * 12 9 8 39 39 H 1.08999 * 109.47476 * 59.99557 * 14 13 12 40 40 H 1.08998 * 109.47058 * 180.02562 * 14 13 12 41 41 H 1.09007 * 109.46664 * 299.99552 * 14 13 12 42 42 H 1.08998 * 109.46975 * 60.00280 * 15 13 12 43 43 H 1.08998 * 109.46447 * 179.97438 * 15 13 12 44 44 H 1.08999 * 109.47291 * 299.99935 * 15 13 12 45 45 H 0.97005 * 119.99637 * 179.97438 * 19 18 16 46 46 H 1.08994 * 109.50076 * 297.71308 * 24 5 4 47 47 H 1.09000 * 109.50123 * 177.59308 * 24 5 4 48 48 H 1.08993 * 109.46229 * 305.85774 * 25 2 1 49 49 H 1.09008 * 109.45803 * 65.83386 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3339 0.1466 5 6 4.1188 0.5371 -1.0144 6 8 3.8183 1.1901 -2.2495 7 6 5.6361 0.4451 -0.8406 8 7 6.1959 1.7930 -0.7148 9 16 7.7390 1.9994 -0.1505 10 8 7.9232 3.4084 -0.1413 11 8 7.7747 1.2481 1.0552 12 6 8.7894 1.2282 -1.4125 13 6 10.2576 1.3556 -1.0014 14 6 10.6233 2.8352 -0.8679 15 6 10.4741 0.6538 0.3409 16 6 11.1301 0.7145 -2.0494 17 1 10.6824 0.2618 -2.9217 18 6 12.5002 0.7057 -1.8948 19 7 13.0455 1.2566 -0.8323 20 14 13.5819 -0.0885 -3.1943 21 1 12.7302 -0.6318 -4.2826 22 1 14.5106 0.9266 -3.7531 23 1 14.3647 -1.1910 -2.5804 24 6 3.5181 -0.8714 -1.0209 25 6 1.9952 -0.7708 -1.1338 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.7324 1.8609 -0.9376 30 1 1.5636 1.9256 0.8331 31 1 3.9100 2.3510 0.1309 32 1 3.7813 0.8565 1.0905 33 1 4.1692 2.0888 -2.3146 34 1 5.8648 -0.1287 0.0577 35 1 6.0719 -0.0498 -1.7084 36 1 5.6625 2.5646 -0.9620 37 1 8.5285 0.1742 -1.5078 38 1 8.6354 1.7285 -2.3685 39 1 9.9922 3.2986 -0.1097 40 1 11.6694 2.9260 -0.5755 41 1 10.4691 3.3352 -1.8242 42 1 10.2135 -0.4003 0.2459 43 1 11.5201 0.7441 0.6335 44 1 9.8429 1.1171 1.0992 45 1 14.0093 1.2501 -0.7233 46 1 3.7814 -1.3835 -0.0955 47 1 3.9099 -1.4302 -1.8709 48 1 1.5634 -1.7715 -1.1243 49 1 1.7325 -0.2706 -2.0661 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566984695.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:04 Heat of formation + Delta-G solvation = -149.284715 kcal Electronic energy + Delta-G solvation = -28816.216744 eV Core-core repulsion = 24904.159401 eV Total energy + Delta-G solvation = -3912.057343 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.86145 -38.13313 -38.10783 -37.68853 -36.88630 -35.32440 -33.62919 -32.99509 -31.85572 -28.60116 -28.26858 -27.68280 -27.24652 -25.60778 -24.22999 -22.69375 -21.39362 -20.78716 -20.30056 -18.94565 -18.02547 -17.63656 -17.33351 -16.90745 -16.71590 -16.44546 -16.03684 -15.98606 -15.69818 -15.37371 -14.91576 -14.74077 -14.55698 -14.43466 -14.40895 -13.85559 -13.73036 -13.56286 -13.37067 -13.09472 -13.00315 -12.91461 -12.88300 -12.74518 -12.49465 -12.48676 -12.32065 -12.19762 -12.16944 -12.11978 -12.02913 -11.94349 -11.56035 -11.40213 -11.24416 -10.86888 -10.68339 -10.41950 -10.31083 -9.24962 -8.03106 -6.21451 -0.60762 1.42796 1.46132 1.55421 1.88376 2.44198 2.85390 2.99658 3.19271 3.24656 3.34658 3.58576 3.72427 3.81844 4.00619 4.17366 4.21046 4.29086 4.37887 4.46235 4.50229 4.58833 4.61080 4.64565 4.72140 4.76275 4.86146 4.87494 4.88900 4.90856 4.99986 5.03204 5.03803 5.09563 5.10726 5.17205 5.33298 5.39881 5.51634 5.65445 5.98663 6.03212 6.12704 6.13692 6.14804 6.34879 6.75219 6.83911 7.47023 8.96861 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023822 B = 0.002864 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.108163 B = 9773.305767 C =10335.930737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.556 5.556 3 C 0.061 3.939 4 C -0.145 4.145 5 C 0.137 3.863 6 O -0.560 6.560 7 C 0.082 3.918 8 N -1.110 6.110 9 S 2.619 3.381 10 O -0.992 6.992 11 O -0.989 6.989 12 C -0.587 4.587 13 C 0.069 3.931 14 C -0.161 4.161 15 C -0.160 4.160 16 C -0.515 4.515 17 H 0.063 0.937 18 C 0.017 3.983 19 N -0.908 5.908 20 Si 0.954 3.046 21 H -0.265 1.265 22 H -0.284 1.284 23 H -0.284 1.284 24 C -0.106 4.106 25 C 0.062 3.938 26 H 0.024 0.976 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.037 0.963 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.384 0.616 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.420 0.580 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.033 0.967 40 H 0.070 0.930 41 H 0.040 0.960 42 H 0.041 0.959 43 H 0.069 0.931 44 H 0.034 0.966 45 H 0.261 0.739 46 H 0.091 0.909 47 H 0.086 0.914 48 H 0.085 0.915 49 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.547 -2.423 -1.600 23.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.281 5.281 3 C -0.067 4.067 4 C -0.183 4.183 5 C 0.094 3.906 6 O -0.367 6.367 7 C -0.044 4.044 8 N -0.872 5.872 9 S 2.716 3.284 10 O -0.982 6.982 11 O -0.978 6.978 12 C -0.720 4.720 13 C 0.067 3.933 14 C -0.219 4.219 15 C -0.218 4.218 16 C -0.554 4.554 17 H 0.081 0.919 18 C -0.183 4.183 19 N -0.547 5.547 20 Si 0.780 3.220 21 H -0.189 1.189 22 H -0.211 1.211 23 H -0.210 1.210 24 C -0.145 4.145 25 C -0.066 4.066 26 H 0.043 0.957 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.055 0.945 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.234 0.766 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.257 0.743 37 H 0.155 0.845 38 H 0.155 0.845 39 H 0.052 0.948 40 H 0.088 0.912 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.088 0.912 44 H 0.052 0.948 45 H 0.070 0.930 46 H 0.109 0.891 47 H 0.105 0.895 48 H 0.104 0.896 49 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -23.214 -2.903 -0.334 23.398 hybrid contribution 0.923 0.711 -1.729 2.085 sum -22.291 -2.192 -2.063 22.493 Atomic orbital electron populations 1.22375 0.86349 1.02688 1.00838 1.61990 1.08563 1.13923 1.43657 1.21994 0.94554 0.89362 1.00770 1.22271 0.95515 1.01256 0.99270 1.21317 0.90682 0.94333 0.84226 1.86541 1.79960 1.33265 1.36970 1.22242 0.95744 0.82831 1.03622 1.55316 1.32072 1.14348 1.85495 1.04594 0.73796 0.73829 0.76200 1.93512 1.85387 1.31519 1.87785 1.93508 1.86049 1.74093 1.44195 1.30458 1.10423 1.13876 1.17210 1.17914 0.87762 0.93266 0.94345 1.22217 1.03568 0.96711 0.99400 1.22212 1.03340 0.99384 0.96892 1.21330 0.91330 1.36756 1.06023 0.91886 1.25679 0.99391 0.95848 0.97355 1.69954 1.11163 1.45092 1.28497 0.85570 0.78818 0.78072 0.79546 1.18938 1.21060 1.20982 1.21639 0.95139 0.93604 1.04085 1.21993 0.94694 0.98544 0.91370 0.95745 0.90562 0.90862 0.94463 0.90278 0.90336 0.90530 0.76625 0.89560 0.89409 0.74325 0.84537 0.84470 0.94820 0.91153 0.94100 0.94023 0.91187 0.94772 0.92966 0.89099 0.89542 0.89645 0.94849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.59 127.69 1.22 1.55 16 2 N -0.56 -9.04 4.91 -922.57 -4.53 -13.57 16 3 C 0.06 0.98 5.33 86.32 0.46 1.44 16 4 C -0.14 -2.47 4.81 30.64 0.15 -2.32 16 5 C 0.14 2.31 0.72 -10.72 -0.01 2.30 16 6 O -0.56 -9.27 11.85 -148.98 -1.77 -11.03 16 7 C 0.08 1.61 5.31 86.38 0.46 2.07 16 8 N -1.11 -24.65 5.27 -187.49 -0.99 -25.64 16 9 S 2.62 88.23 4.49 -56.49 -0.25 87.97 16 10 O -0.99 -38.89 15.70 -127.65 -2.00 -40.89 16 11 O -0.99 -38.90 15.12 -127.65 -1.93 -40.83 16 12 C -0.59 -21.13 5.01 71.98 0.36 -20.77 16 13 C 0.07 3.26 0.52 -52.93 -0.03 3.24 16 14 C -0.16 -7.90 7.78 71.98 0.56 -7.34 16 15 C -0.16 -7.83 7.77 71.98 0.56 -7.27 16 16 C -0.52 -26.44 8.01 25.60 0.21 -26.24 16 17 H 0.06 3.11 7.74 -2.91 -0.02 3.09 16 18 C 0.02 0.87 5.15 84.65 0.44 1.31 16 19 N -0.91 -50.05 9.35 21.45 0.20 -49.85 16 20 Si 0.95 41.87 29.54 68.60 2.03 43.89 16 21 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 22 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 23 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 24 C -0.11 -1.68 5.11 30.65 0.16 -1.53 16 25 C 0.06 0.96 5.33 86.32 0.46 1.42 16 26 H 0.02 0.31 8.14 -2.38 -0.02 0.29 16 27 H 0.08 0.82 8.09 -2.38 -0.02 0.81 16 28 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.04 0.62 7.76 -2.39 -0.02 0.60 16 30 H 0.08 1.16 8.12 -2.39 -0.02 1.14 16 31 H 0.08 1.22 7.00 -2.38 -0.02 1.21 16 32 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 33 H 0.38 4.45 7.92 -74.06 -0.59 3.86 16 34 H 0.09 1.82 7.70 -2.38 -0.02 1.80 16 35 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.42 7.21 6.71 -96.74 -0.65 6.57 16 37 H 0.14 4.32 8.14 -2.39 -0.02 4.30 16 38 H 0.14 4.39 8.14 -2.39 -0.02 4.37 16 39 H 0.03 1.56 5.46 -2.39 -0.01 1.55 16 40 H 0.07 3.79 6.07 -2.39 -0.01 3.77 16 41 H 0.04 1.89 8.14 -2.38 -0.02 1.87 16 42 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.07 3.76 6.07 -2.39 -0.01 3.75 16 44 H 0.03 1.58 5.46 -2.39 -0.01 1.57 16 45 H 0.26 13.75 8.31 -92.70 -0.77 12.98 16 46 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 47 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 48 H 0.09 1.13 8.08 -2.39 -0.02 1.11 16 49 H 0.03 0.59 7.76 -2.38 -0.02 0.57 16 Total: -1.00 -67.93 377.67 -4.54 -72.46 By element: Atomic # 1 Polarization: 29.92 SS G_CDS: -0.29 Total: 29.63 kcal Atomic # 6 Polarization: -57.13 SS G_CDS: 4.99 Total: -52.14 kcal Atomic # 7 Polarization: -83.75 SS G_CDS: -5.32 Total: -89.06 kcal Atomic # 8 Polarization: -87.06 SS G_CDS: -5.70 Total: -92.76 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.89 kcal Atomic # 16 Polarization: 88.23 SS G_CDS: -0.25 Total: 87.97 kcal Total: -67.93 -4.54 -72.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566984695.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.820 kcal (2) G-P(sol) polarization free energy of solvation -67.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds