Wall clock time and date at job start Tue Mar 31 2020 17:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46684 * 2 1 4 4 C 1.50699 * 109.46997 * 240.00036 * 2 1 3 5 5 H 1.08000 * 119.99656 * 239.99149 * 4 2 1 6 6 C 1.37870 * 120.00060 * 60.00007 * 4 2 1 7 7 N 1.31510 * 120.00322 * 359.97438 * 6 4 2 8 8 Si 1.86813 * 119.99847 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.46782 * 59.99610 * 8 6 4 10 10 H 1.48501 * 109.46903 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.46786 * 299.99973 * 8 6 4 12 12 C 1.52999 * 109.47255 * 119.99689 * 2 1 3 13 13 S 1.81404 * 109.47195 * 300.00250 * 12 2 1 14 14 O 1.42101 * 110.54325 * 68.37406 * 13 12 2 15 15 O 1.42097 * 110.54311 * 291.62628 * 13 12 2 16 16 N 1.65594 * 104.44954 * 179.97438 * 13 12 2 17 17 C 1.47613 * 118.75019 * 269.97848 * 16 13 12 18 18 C 1.53910 * 111.34025 * 138.26162 * 17 16 13 19 19 C 1.51277 * 109.59387 * 320.09525 * 18 17 16 20 20 N 1.46201 * 109.16001 * 92.32341 * 19 18 17 21 21 C 1.46896 * 111.00026 * 144.72287 * 20 19 18 22 22 C 1.53000 * 109.47354 * 66.04494 * 21 20 19 23 23 O 1.42904 * 109.47087 * 64.99614 * 22 21 20 24 24 C 1.41447 * 116.34407 * 272.92708 * 20 19 18 25 25 C 1.44881 * 118.74705 * 90.00095 * 16 13 12 26 26 H 1.08996 * 109.47416 * 299.99895 * 1 2 3 27 27 H 1.09002 * 109.47583 * 60.00598 * 1 2 3 28 28 H 1.09001 * 109.46687 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46579 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.46908 * 299.99523 * 3 2 1 31 31 H 1.08996 * 109.47108 * 59.99916 * 3 2 1 32 32 H 0.97003 * 119.99879 * 180.02562 * 7 6 4 33 33 H 1.08997 * 109.47172 * 180.02562 * 12 2 1 34 34 H 1.09001 * 109.47229 * 60.00386 * 12 2 1 35 35 H 1.08997 * 109.11381 * 258.79090 * 17 16 13 36 36 H 1.09002 * 109.11206 * 17.90873 * 17 16 13 37 37 H 1.08997 * 109.56732 * 199.99111 * 18 17 16 38 38 H 1.09003 * 109.35604 * 80.06605 * 18 17 16 39 39 H 1.09002 * 109.53482 * 332.39620 * 19 18 17 40 40 H 1.09002 * 109.53068 * 212.24550 * 19 18 17 41 41 H 1.09003 * 109.46998 * 186.04505 * 21 20 19 42 42 H 1.09004 * 109.46822 * 306.04425 * 21 20 19 43 43 H 1.09000 * 109.47425 * 185.00028 * 22 21 20 44 44 H 1.09007 * 109.46886 * 305.00079 * 22 21 20 45 45 H 0.96702 * 113.99672 * 180.02562 * 23 22 21 46 46 H 1.08994 * 109.38534 * 183.64004 * 24 20 19 47 47 H 1.09008 * 109.38587 * 303.32731 * 24 20 19 48 48 H 1.09003 * 109.43837 * 149.65324 * 25 16 13 49 49 H 1.09004 * 109.43699 * 29.78825 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3225 -1.1196 -4.0080 9 1 1.8281 -2.5199 -4.0080 10 1 1.8269 -0.4200 -5.2204 11 1 3.8075 -1.1190 -4.0077 12 6 2.0400 -0.7212 1.2493 13 16 1.4353 0.1340 2.7304 14 8 0.0279 -0.0182 2.8544 15 8 2.0478 1.4102 2.8544 16 7 2.0530 -0.7406 3.9936 17 6 1.2607 -1.8622 4.5352 18 6 2.1501 -3.0809 4.8391 19 6 3.1822 -3.2412 3.7447 20 7 4.4000 -2.5274 4.1253 21 6 5.5961 -3.2401 3.6570 22 6 5.6304 -3.2286 2.1274 23 8 5.7850 -1.8855 1.6645 24 6 4.4584 -1.1571 3.7794 25 6 3.3503 -0.3756 4.5255 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8901 31 1 1.6765 1.9564 0.8899 32 1 0.7081 1.1607 -3.4844 33 1 3.1300 -0.7208 1.2495 34 1 1.6768 -1.7489 1.2493 35 1 0.7687 -1.5410 5.4533 36 1 0.5029 -2.1488 3.8060 37 1 1.5340 -3.9786 4.8912 38 1 2.6541 -2.9313 5.7940 39 1 2.7935 -2.8283 2.8138 40 1 3.4073 -4.2990 3.6082 41 1 6.4877 -2.7469 4.0441 42 1 5.5675 -4.2703 4.0121 43 1 6.4683 -3.8320 1.7782 44 1 4.6989 -3.6415 1.7400 45 1 5.8144 -1.8024 0.7015 46 1 5.4332 -0.7555 4.0560 47 1 4.3160 -1.0490 2.7041 48 1 3.3880 -0.6177 5.5876 49 1 3.5088 0.6946 4.3923 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568296914.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:54 Heat of formation + Delta-G solvation = -104.814123 kcal Electronic energy + Delta-G solvation = -30659.016524 eV Core-core repulsion = 26748.887571 eV Total energy + Delta-G solvation = -3910.128953 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.61440 -36.90428 -36.59074 -36.26256 -35.30846 -34.81262 -32.58983 -31.68090 -29.85728 -26.84078 -26.35146 -26.02172 -25.71019 -25.24053 -22.81510 -21.27570 -20.21729 -19.32981 -18.34355 -17.48785 -17.38886 -16.45350 -16.04492 -15.85864 -15.49020 -15.35866 -14.99096 -14.78449 -14.25822 -14.09801 -13.56660 -13.37932 -13.19287 -13.06819 -12.54211 -12.52056 -12.47741 -12.14363 -12.03840 -11.88366 -11.61080 -11.47608 -11.23535 -11.14814 -11.08563 -11.02228 -10.94535 -10.80998 -10.69983 -10.55939 -10.38952 -10.25324 -10.09184 -10.00549 -9.64277 -9.53671 -8.87005 -8.56070 -8.41915 -8.03667 -6.04945 -4.17134 0.90702 3.15301 3.22506 3.29134 3.29269 3.85847 4.24950 4.31424 4.44316 4.66919 4.74389 4.92418 4.96245 5.08640 5.15738 5.19579 5.23616 5.24213 5.30951 5.45122 5.54888 5.62557 5.65237 5.72578 5.75348 5.82010 5.86017 5.93318 6.01405 6.15463 6.25860 6.35369 6.49024 6.71936 6.80618 6.88036 6.92288 7.05907 7.15977 7.31967 7.43248 7.50964 7.58898 7.65329 7.97792 8.08696 8.32083 8.80471 9.47839 10.96302 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012221 B = 0.005506 C = 0.004370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2290.668731 B = 5083.739455 C = 6406.254087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.084 3.916 3 C -0.162 4.162 4 C -0.500 4.500 5 H 0.056 0.944 6 C 0.065 3.935 7 N -0.883 5.883 8 Si 0.894 3.106 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.278 1.278 12 C -0.582 4.582 13 S 2.588 3.412 14 O -0.966 6.966 15 O -0.963 6.963 16 N -1.002 6.002 17 C 0.123 3.877 18 C -0.128 4.128 19 C 0.066 3.934 20 N -0.553 5.553 21 C 0.063 3.937 22 C 0.036 3.964 23 O -0.564 6.564 24 C 0.046 3.954 25 C 0.113 3.887 26 H 0.027 0.973 27 H 0.095 0.905 28 H 0.035 0.965 29 H 0.036 0.964 30 H 0.094 0.906 31 H 0.027 0.973 32 H 0.263 0.737 33 H 0.120 0.880 34 H 0.111 0.889 35 H 0.064 0.936 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.046 0.954 40 H 0.067 0.933 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.044 0.956 44 H 0.046 0.954 45 H 0.380 0.620 46 H 0.081 0.919 47 H 0.061 0.939 48 H 0.082 0.918 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.229 -9.232 12.974 17.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.082 3.918 3 C -0.220 4.220 4 C -0.539 4.539 5 H 0.074 0.926 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.722 3.278 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.203 1.203 12 C -0.715 4.715 13 S 2.687 3.313 14 O -0.956 6.956 15 O -0.953 6.953 16 N -0.838 5.838 17 C -0.003 4.003 18 C -0.168 4.168 19 C -0.061 4.061 20 N -0.276 5.276 21 C -0.065 4.065 22 C -0.044 4.044 23 O -0.371 6.371 24 C -0.084 4.084 25 C -0.014 4.014 26 H 0.046 0.954 27 H 0.113 0.887 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.113 0.887 31 H 0.046 0.954 32 H 0.073 0.927 33 H 0.138 0.862 34 H 0.130 0.870 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.064 0.936 40 H 0.086 0.914 41 H 0.098 0.902 42 H 0.103 0.897 43 H 0.062 0.938 44 H 0.064 0.936 45 H 0.229 0.771 46 H 0.100 0.900 47 H 0.079 0.921 48 H 0.100 0.900 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 6.570 -8.198 14.107 17.589 hybrid contribution 0.780 -1.321 -2.652 3.063 sum 7.349 -9.519 11.455 16.608 Atomic orbital electron populations 1.22273 0.97066 1.00501 1.02279 1.17895 0.92660 0.92170 0.89054 1.22257 0.99713 0.97817 1.02218 1.20853 1.31719 1.11937 0.89420 0.92616 1.24926 0.94935 0.94968 0.98827 1.69789 1.36184 1.22543 1.23553 0.86635 0.79072 0.79692 0.82407 1.20394 1.21138 1.20348 1.30656 1.11297 1.12324 1.17223 1.05824 0.74628 0.75255 0.75625 1.93527 1.29650 1.86658 1.85776 1.93516 1.78142 1.37974 1.85653 1.57485 1.28824 1.46511 1.50951 1.21616 0.92673 0.86030 0.99942 1.21880 0.97220 0.97348 1.00302 1.21565 0.89863 0.97410 0.97297 1.58522 1.01984 1.02933 1.64208 1.22299 0.93892 0.99319 0.90960 1.22997 0.99730 0.84502 0.97168 1.86580 1.96448 1.26452 1.27614 1.22047 0.99222 0.87169 1.00008 1.21533 0.80997 0.99578 0.99269 0.95438 0.88682 0.94608 0.94462 0.88749 0.95446 0.92674 0.86215 0.87040 0.91723 0.90046 0.90626 0.90221 0.93575 0.91417 0.90191 0.89714 0.93776 0.93589 0.77123 0.90034 0.92104 0.89972 0.88637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.06 7.77 37.16 0.29 -3.77 16 2 C 0.08 2.04 0.52 -155.66 -0.08 1.96 16 3 C -0.16 -4.03 7.78 37.16 0.29 -3.74 16 4 C -0.50 -12.87 8.01 -34.44 -0.28 -13.15 16 5 H 0.06 1.38 7.74 -52.49 -0.41 0.97 16 6 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 7 N -0.88 -23.96 9.35 55.43 0.52 -23.44 16 8 Si 0.89 20.30 29.54 -169.99 -5.02 15.28 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 12 C -0.58 -11.53 4.47 37.16 0.17 -11.36 16 13 S 2.59 50.30 4.35 -107.50 -0.47 49.83 16 14 O -0.97 -20.94 14.35 -57.54 -0.83 -21.77 16 15 O -0.96 -20.90 14.05 -57.54 -0.81 -21.71 16 16 N -1.00 -15.02 2.41 -113.16 -0.27 -15.30 16 17 C 0.12 1.55 5.94 -2.96 -0.02 1.53 16 18 C -0.13 -1.28 5.80 -27.13 -0.16 -1.44 16 19 C 0.07 0.72 4.15 -5.07 -0.02 0.70 16 20 N -0.55 -6.15 4.00 -239.48 -0.96 -7.11 16 21 C 0.06 0.60 5.66 -3.83 -0.02 0.58 16 22 C 0.04 0.37 7.01 37.16 0.26 0.63 16 23 O -0.56 -6.88 10.45 -35.23 -0.37 -7.25 16 24 C 0.05 0.59 4.29 -5.74 -0.02 0.56 16 25 C 0.11 1.52 5.73 -3.98 -0.02 1.50 16 26 H 0.03 0.65 5.46 -51.93 -0.28 0.37 16 27 H 0.09 2.54 6.07 -51.93 -0.32 2.22 16 28 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.09 2.52 6.07 -51.93 -0.32 2.20 16 31 H 0.03 0.65 5.46 -51.93 -0.28 0.37 16 32 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 33 H 0.12 2.23 6.33 -51.93 -0.33 1.90 16 34 H 0.11 2.04 7.56 -51.92 -0.39 1.65 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.08 1.07 7.24 -51.93 -0.38 0.69 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.78 7.98 -51.93 -0.41 0.37 16 39 H 0.05 0.59 6.10 -51.93 -0.32 0.28 16 40 H 0.07 0.63 7.55 -51.93 -0.39 0.24 16 41 H 0.08 0.76 7.95 -51.93 -0.41 0.35 16 42 H 0.08 0.65 7.90 -51.93 -0.41 0.24 16 43 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.05 0.50 7.21 -51.93 -0.37 0.13 16 45 H 0.38 3.91 9.12 45.56 0.42 4.32 16 46 H 0.08 1.01 7.86 -51.93 -0.41 0.60 16 47 H 0.06 0.90 3.94 -51.92 -0.20 0.70 16 48 H 0.08 0.97 8.11 -51.93 -0.42 0.55 16 49 H 0.10 1.38 6.74 -51.93 -0.35 1.03 16 LS Contribution 363.52 15.07 5.48 5.48 Total: -1.00 -31.45 363.52 -9.67 -41.13 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -7.24 Total: 9.24 kcal Atomic # 6 Polarization: -24.67 SS G_CDS: 0.29 Total: -24.37 kcal Atomic # 7 Polarization: -45.14 SS G_CDS: -0.71 Total: -45.85 kcal Atomic # 8 Polarization: -48.73 SS G_CDS: -2.00 Total: -50.73 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Atomic # 16 Polarization: 50.30 SS G_CDS: -0.47 Total: 49.83 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.45 -9.67 -41.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568296914.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.688 kcal (2) G-P(sol) polarization free energy of solvation -31.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds