Wall clock time and date at job start Tue Mar 31 2020 17:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46684 * 2 1 4 4 C 1.50699 * 109.46997 * 240.00036 * 2 1 3 5 5 H 1.08000 * 119.99656 * 239.99149 * 4 2 1 6 6 C 1.37870 * 120.00060 * 60.00007 * 4 2 1 7 7 N 1.31510 * 120.00322 * 359.97438 * 6 4 2 8 8 Si 1.86813 * 119.99847 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.46782 * 59.99610 * 8 6 4 10 10 H 1.48501 * 109.46903 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.46786 * 299.99973 * 8 6 4 12 12 C 1.52999 * 109.47255 * 119.99689 * 2 1 3 13 13 S 1.81404 * 109.47195 * 300.00250 * 12 2 1 14 14 O 1.42101 * 110.54325 * 68.37406 * 13 12 2 15 15 O 1.42097 * 110.54311 * 291.62628 * 13 12 2 16 16 N 1.65594 * 104.44954 * 179.97438 * 13 12 2 17 17 C 1.47613 * 118.75019 * 269.97848 * 16 13 12 18 18 C 1.53910 * 111.34025 * 138.26162 * 17 16 13 19 19 C 1.51277 * 109.59387 * 320.09525 * 18 17 16 20 20 N 1.46201 * 109.16001 * 92.32341 * 19 18 17 21 21 C 1.46896 * 111.00026 * 144.72287 * 20 19 18 22 22 C 1.53000 * 109.47354 * 66.04494 * 21 20 19 23 23 O 1.42904 * 109.47087 * 64.99614 * 22 21 20 24 24 C 1.41447 * 116.34407 * 272.92708 * 20 19 18 25 25 C 1.44881 * 118.74705 * 90.00095 * 16 13 12 26 26 H 1.08996 * 109.47416 * 299.99895 * 1 2 3 27 27 H 1.09002 * 109.47583 * 60.00598 * 1 2 3 28 28 H 1.09001 * 109.46687 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46579 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.46908 * 299.99523 * 3 2 1 31 31 H 1.08996 * 109.47108 * 59.99916 * 3 2 1 32 32 H 0.97003 * 119.99879 * 180.02562 * 7 6 4 33 33 H 1.08997 * 109.47172 * 180.02562 * 12 2 1 34 34 H 1.09001 * 109.47229 * 60.00386 * 12 2 1 35 35 H 1.08997 * 109.11381 * 258.79090 * 17 16 13 36 36 H 1.09002 * 109.11206 * 17.90873 * 17 16 13 37 37 H 1.08997 * 109.56732 * 199.99111 * 18 17 16 38 38 H 1.09003 * 109.35604 * 80.06605 * 18 17 16 39 39 H 1.09002 * 109.53482 * 332.39620 * 19 18 17 40 40 H 1.09002 * 109.53068 * 212.24550 * 19 18 17 41 41 H 1.09003 * 109.46998 * 186.04505 * 21 20 19 42 42 H 1.09004 * 109.46822 * 306.04425 * 21 20 19 43 43 H 1.09000 * 109.47425 * 185.00028 * 22 21 20 44 44 H 1.09007 * 109.46886 * 305.00079 * 22 21 20 45 45 H 0.96702 * 113.99672 * 180.02562 * 23 22 21 46 46 H 1.08994 * 109.38534 * 183.64004 * 24 20 19 47 47 H 1.09008 * 109.38587 * 303.32731 * 24 20 19 48 48 H 1.09003 * 109.43837 * 149.65324 * 25 16 13 49 49 H 1.09004 * 109.43699 * 29.78825 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3225 -1.1196 -4.0080 9 1 1.8281 -2.5199 -4.0080 10 1 1.8269 -0.4200 -5.2204 11 1 3.8075 -1.1190 -4.0077 12 6 2.0400 -0.7212 1.2493 13 16 1.4353 0.1340 2.7304 14 8 0.0279 -0.0182 2.8544 15 8 2.0478 1.4102 2.8544 16 7 2.0530 -0.7406 3.9936 17 6 1.2607 -1.8622 4.5352 18 6 2.1501 -3.0809 4.8391 19 6 3.1822 -3.2412 3.7447 20 7 4.4000 -2.5274 4.1253 21 6 5.5961 -3.2401 3.6570 22 6 5.6304 -3.2286 2.1274 23 8 5.7850 -1.8855 1.6645 24 6 4.4584 -1.1571 3.7794 25 6 3.3503 -0.3756 4.5255 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8901 31 1 1.6765 1.9564 0.8899 32 1 0.7081 1.1607 -3.4844 33 1 3.1300 -0.7208 1.2495 34 1 1.6768 -1.7489 1.2493 35 1 0.7687 -1.5410 5.4533 36 1 0.5029 -2.1488 3.8060 37 1 1.5340 -3.9786 4.8912 38 1 2.6541 -2.9313 5.7940 39 1 2.7935 -2.8283 2.8138 40 1 3.4073 -4.2990 3.6082 41 1 6.4877 -2.7469 4.0441 42 1 5.5675 -4.2703 4.0121 43 1 6.4683 -3.8320 1.7782 44 1 4.6989 -3.6415 1.7400 45 1 5.8144 -1.8024 0.7015 46 1 5.4332 -0.7555 4.0560 47 1 4.3160 -1.0490 2.7041 48 1 3.3880 -0.6177 5.5876 49 1 3.5088 0.6946 4.3923 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568296914.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:53 Heat of formation + Delta-G solvation = -128.393024 kcal Electronic energy + Delta-G solvation = -30660.038982 eV Core-core repulsion = 26748.887571 eV Total energy + Delta-G solvation = -3911.151411 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.51977 -38.22687 -38.17320 -37.81625 -36.92145 -35.82683 -33.65130 -33.52194 -30.74463 -28.48798 -27.72424 -27.40245 -27.24251 -26.97341 -23.67739 -22.37360 -21.25122 -21.01771 -19.71605 -18.81907 -18.35124 -17.91723 -17.61248 -17.10559 -16.74923 -16.66135 -16.36768 -16.23759 -15.36814 -15.15196 -14.98832 -14.74183 -14.49027 -14.37759 -14.30354 -13.87068 -13.73634 -13.40566 -13.28416 -13.12221 -12.92864 -12.89030 -12.87313 -12.79516 -12.54653 -12.37196 -12.29384 -12.19380 -12.14875 -11.98532 -11.86332 -11.72191 -11.60721 -11.55684 -11.32344 -10.84882 -10.64981 -10.42345 -9.85180 -8.92652 -8.03303 -6.22127 -0.62972 1.43639 1.44043 1.51319 1.78400 2.42783 2.87322 3.02481 3.17667 3.22809 3.47934 3.68547 3.99226 4.05759 4.08498 4.11525 4.23462 4.29795 4.32763 4.41167 4.52532 4.55332 4.61844 4.69194 4.74157 4.81965 4.84036 4.87252 4.89599 4.94699 4.96536 5.05019 5.10517 5.16950 5.23211 5.33174 5.39256 5.42801 5.48600 5.62553 5.80158 5.93878 6.08995 6.32412 6.32596 6.52664 6.79828 6.81851 7.45851 8.96709 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012221 B = 0.005506 C = 0.004370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2290.668731 B = 5083.739455 C = 6406.254087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.074 3.926 3 C -0.157 4.157 4 C -0.512 4.512 5 H 0.063 0.937 6 C 0.019 3.981 7 N -0.909 5.909 8 Si 0.954 3.046 9 H -0.272 1.272 10 H -0.289 1.289 11 H -0.270 1.270 12 C -0.576 4.576 13 S 2.598 3.402 14 O -0.991 6.991 15 O -0.990 6.990 16 N -0.990 5.990 17 C 0.111 3.889 18 C -0.117 4.117 19 C 0.060 3.940 20 N -0.551 5.551 21 C 0.063 3.937 22 C 0.033 3.967 23 O -0.584 6.584 24 C 0.052 3.948 25 C 0.109 3.891 26 H 0.028 0.972 27 H 0.072 0.928 28 H 0.039 0.961 29 H 0.039 0.961 30 H 0.071 0.929 31 H 0.027 0.973 32 H 0.261 0.739 33 H 0.130 0.870 34 H 0.126 0.874 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.101 0.899 38 H 0.088 0.912 39 H 0.024 0.976 40 H 0.089 0.911 41 H 0.080 0.920 42 H 0.109 0.891 43 H 0.060 0.940 44 H 0.038 0.962 45 H 0.385 0.615 46 H 0.085 0.915 47 H 0.041 0.959 48 H 0.106 0.894 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.472 -11.702 14.246 20.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.072 3.928 3 C -0.215 4.215 4 C -0.551 4.551 5 H 0.081 0.919 6 C -0.181 4.181 7 N -0.548 5.548 8 Si 0.780 3.220 9 H -0.198 1.198 10 H -0.215 1.215 11 H -0.195 1.195 12 C -0.708 4.708 13 S 2.697 3.303 14 O -0.982 6.982 15 O -0.980 6.980 16 N -0.829 5.829 17 C -0.013 4.013 18 C -0.157 4.157 19 C -0.067 4.067 20 N -0.274 5.274 21 C -0.065 4.065 22 C -0.046 4.046 23 O -0.391 6.391 24 C -0.079 4.079 25 C -0.016 4.016 26 H 0.047 0.953 27 H 0.090 0.910 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.090 0.910 31 H 0.046 0.954 32 H 0.071 0.929 33 H 0.148 0.852 34 H 0.144 0.856 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.119 0.881 38 H 0.106 0.894 39 H 0.043 0.957 40 H 0.108 0.892 41 H 0.099 0.901 42 H 0.128 0.872 43 H 0.079 0.921 44 H 0.057 0.943 45 H 0.234 0.766 46 H 0.103 0.897 47 H 0.059 0.941 48 H 0.124 0.876 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 7.818 -10.680 15.374 20.287 hybrid contribution 0.403 -0.570 -2.978 3.059 sum 8.222 -11.249 12.396 18.649 Atomic orbital electron populations 1.22203 0.97955 1.00369 1.01165 1.17882 0.92084 0.91976 0.90863 1.22180 0.99736 0.98510 1.01074 1.21186 1.31629 1.12172 0.90162 0.91882 1.25672 0.95175 0.95611 1.01629 1.69938 1.37171 1.23760 1.23900 0.85686 0.78843 0.78657 0.78860 1.19771 1.21479 1.19469 1.30520 1.11889 1.12616 1.15813 1.05199 0.73957 0.75033 0.76097 1.93485 1.31374 1.87043 1.86252 1.93473 1.78442 1.39993 1.86133 1.57165 1.29536 1.46934 1.49240 1.21943 0.93050 0.86301 1.00045 1.21858 0.96825 0.96832 1.00168 1.21676 0.89932 0.98470 0.96611 1.58559 1.02746 1.02111 1.63962 1.22422 0.93170 1.00488 0.90405 1.23112 1.00025 0.83816 0.97696 1.86561 1.96517 1.27863 1.28189 1.21921 0.98950 0.88430 0.98597 1.21686 0.80301 0.99074 1.00588 0.95340 0.90954 0.94161 0.94202 0.91006 0.95401 0.92925 0.85175 0.85572 0.90492 0.90781 0.88080 0.89373 0.95728 0.89244 0.90125 0.87250 0.92133 0.94324 0.76600 0.89657 0.94111 0.87579 0.90039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -8.05 7.77 71.98 0.56 -7.49 16 2 C 0.07 3.60 0.52 -52.93 -0.03 3.58 16 3 C -0.16 -7.99 7.78 71.98 0.56 -7.43 16 4 C -0.51 -26.32 8.01 25.60 0.21 -26.12 16 5 H 0.06 3.07 7.74 -2.91 -0.02 3.05 16 6 C 0.02 0.97 5.15 84.65 0.44 1.41 16 7 N -0.91 -50.33 9.35 21.44 0.20 -50.13 16 8 Si 0.95 41.43 29.54 68.60 2.03 43.46 16 9 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 10 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 12 C -0.58 -22.66 4.47 71.98 0.32 -22.34 16 13 S 2.60 100.81 4.35 -56.49 -0.25 100.57 16 14 O -0.99 -43.08 14.35 -127.65 -1.83 -44.91 16 15 O -0.99 -43.52 14.05 -127.65 -1.79 -45.31 16 16 N -0.99 -28.43 2.41 -511.92 -1.24 -29.66 16 17 C 0.11 2.56 5.94 86.47 0.51 3.07 16 18 C -0.12 -1.94 5.80 30.34 0.18 -1.77 16 19 C 0.06 1.14 4.15 85.87 0.36 1.49 16 20 N -0.55 -10.71 4.00 -911.59 -3.65 -14.36 16 21 C 0.06 1.01 5.66 86.30 0.49 1.49 16 22 C 0.03 0.60 7.01 71.98 0.50 1.10 16 23 O -0.58 -13.59 10.45 -148.98 -1.56 -15.14 16 24 C 0.05 1.25 4.29 87.90 0.38 1.62 16 25 C 0.11 2.79 5.73 87.29 0.50 3.29 16 26 H 0.03 1.39 5.46 -2.39 -0.01 1.38 16 27 H 0.07 3.98 6.07 -2.39 -0.01 3.96 16 28 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.07 3.96 6.07 -2.39 -0.01 3.94 16 31 H 0.03 1.37 5.46 -2.39 -0.01 1.36 16 32 H 0.26 13.90 8.31 -92.71 -0.77 13.13 16 33 H 0.13 4.82 6.33 -2.39 -0.02 4.80 16 34 H 0.13 4.52 7.56 -2.39 -0.02 4.50 16 35 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.07 1.83 7.24 -2.39 -0.02 1.81 16 37 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.09 1.36 7.98 -2.39 -0.02 1.34 16 39 H 0.02 0.58 6.10 -2.39 -0.01 0.56 16 40 H 0.09 1.31 7.55 -2.39 -0.02 1.29 16 41 H 0.08 1.31 7.95 -2.39 -0.02 1.29 16 42 H 0.11 1.23 7.90 -2.38 -0.02 1.22 16 43 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.04 0.76 7.21 -2.38 -0.02 0.74 16 45 H 0.38 7.69 9.12 -74.06 -0.68 7.01 16 46 H 0.09 1.98 7.86 -2.39 -0.02 1.96 16 47 H 0.04 1.17 3.94 -2.38 -0.01 1.16 16 48 H 0.11 2.22 8.11 -2.39 -0.02 2.20 16 49 H 0.08 2.32 6.74 -2.39 -0.02 2.30 16 Total: -1.00 -67.56 363.52 -2.84 -70.39 By element: Atomic # 1 Polarization: 32.92 SS G_CDS: 0.28 Total: 33.20 kcal Atomic # 6 Polarization: -53.06 SS G_CDS: 4.97 Total: -48.09 kcal Atomic # 7 Polarization: -89.47 SS G_CDS: -4.69 Total: -94.15 kcal Atomic # 8 Polarization: -100.19 SS G_CDS: -5.18 Total: -105.37 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Atomic # 16 Polarization: 100.81 SS G_CDS: -0.25 Total: 100.57 kcal Total: -67.56 -2.84 -70.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568296914.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.002 kcal (2) G-P(sol) polarization free energy of solvation -67.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds