Wall clock time and date at job start Tue Mar 31 2020 17:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45199 * 109.47176 * 2 1 4 4 C 1.34747 * 117.00227 * 179.97438 * 3 2 1 5 5 O 1.21510 * 119.99899 * 359.97438 * 4 3 2 6 6 C 1.47463 * 120.00394 * 180.02562 * 4 3 2 7 7 C 1.39806 * 120.07906 * 180.02562 * 6 4 3 8 8 C 1.37641 * 119.91854 * 180.02562 * 7 6 4 9 9 C 1.39156 * 120.08165 * 359.97438 * 8 7 6 10 10 N 1.39408 * 119.92235 * 180.02562 * 9 8 7 11 11 C 1.34776 * 120.00238 * 144.22288 * 10 9 8 12 12 O 1.21275 * 119.99916 * 4.54790 * 11 10 9 13 13 C 1.50698 * 120.00338 * 184.54281 * 11 10 9 14 14 N 1.46892 * 109.47309 * 179.97438 * 13 11 10 15 15 C 1.46897 * 111.00097 * 183.36081 * 14 13 11 16 16 H 1.08998 * 109.47533 * 35.08946 * 15 14 13 17 17 C 1.50703 * 109.47275 * 155.09429 * 15 14 13 18 18 H 1.07998 * 119.99755 * 5.05640 * 17 15 14 19 19 C 1.37880 * 119.99938 * 185.06296 * 17 15 14 20 20 N 1.31512 * 120.00209 * 10.78652 * 19 17 15 21 21 Si 1.86805 * 119.99825 * 190.79397 * 19 17 15 22 22 H 1.48495 * 109.46813 * 179.97438 * 21 19 17 23 23 H 1.48496 * 109.46833 * 299.99537 * 21 19 17 24 24 H 1.48496 * 109.47075 * 59.99381 * 21 19 17 25 25 C 1.53000 * 109.47249 * 275.09049 * 15 14 13 26 26 C 1.52997 * 109.47250 * 300.90975 * 25 15 14 27 27 C 1.39148 * 120.15595 * 0.27635 * 9 8 7 28 28 C 1.37653 * 120.07842 * 359.44693 * 27 9 8 29 29 H 1.09000 * 109.47632 * 300.00094 * 1 2 3 30 30 H 1.08999 * 109.47135 * 60.00375 * 1 2 3 31 31 H 1.08995 * 109.47306 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47207 * 239.99394 * 2 1 3 33 33 H 1.09004 * 109.46831 * 119.99288 * 2 1 3 34 34 H 1.07992 * 120.04132 * 359.97438 * 7 6 4 35 35 H 1.08001 * 119.96581 * 179.97438 * 8 7 6 36 36 H 0.97002 * 120.00157 * 324.21829 * 10 9 8 37 37 H 1.09008 * 109.46694 * 60.00251 * 13 11 10 38 38 H 1.08998 * 109.47191 * 300.00476 * 13 11 10 39 39 H 1.00903 * 111.00468 * 307.31496 * 14 13 11 40 40 H 0.97001 * 120.00049 * 358.03032 * 20 19 17 41 41 H 1.09004 * 109.47052 * 60.90609 * 25 15 14 42 42 H 1.09003 * 109.47797 * 180.90364 * 25 15 14 43 43 H 1.09005 * 109.47143 * 183.49117 * 26 25 15 44 44 H 1.09008 * 109.46926 * 303.48462 * 26 25 15 45 45 H 1.08994 * 109.47510 * 63.48570 * 26 25 15 46 46 H 1.07993 * 119.96126 * 179.70711 * 27 9 8 47 47 H 1.07997 * 120.04085 * 180.24702 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3498 1.5455 0.0005 5 8 4.0900 0.5819 0.0015 6 6 3.9135 2.9082 0.0011 7 6 5.2993 3.0932 0.0012 8 6 5.8219 4.3666 0.0023 9 6 4.9727 5.4690 0.0028 10 7 5.5056 6.7572 0.0034 11 6 4.8881 7.7422 -0.6785 12 8 3.8263 7.5286 -1.2240 13 6 5.5171 9.1091 -0.7630 14 7 4.6553 9.9965 -1.5552 15 6 5.2754 11.3172 -1.7263 16 1 6.3556 11.2027 -1.8155 17 6 4.7345 11.9684 -2.9731 18 1 3.9447 11.4898 -3.5331 19 6 5.2480 13.1751 -3.3989 20 7 6.3425 13.6545 -2.8496 21 14 4.3889 14.1289 -4.7560 22 1 5.1347 15.3840 -5.0272 23 1 4.3438 13.3030 -5.9893 24 1 3.0050 14.4581 -4.3299 25 6 4.9539 12.1926 -0.5134 26 6 3.4368 12.3348 -0.3747 27 6 3.5930 5.2886 0.0081 28 6 3.0633 4.0181 0.0012 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 5.9589 2.2382 0.0011 35 1 6.8922 4.5104 0.0027 36 1 6.3207 6.9447 0.4946 37 1 6.4939 9.0306 -1.2404 38 1 5.6349 9.5175 0.2407 39 1 4.4337 9.5827 -2.4484 40 1 6.7725 13.1734 -2.1254 41 1 5.3591 11.7297 0.3865 42 1 5.4004 13.1779 -0.6476 43 1 3.2090 13.0083 0.4515 44 1 3.0240 12.7405 -1.2985 45 1 2.9966 11.3572 -0.1786 46 1 2.9369 6.1464 0.0133 47 1 1.9923 3.8788 0.0013 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568997400.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:03 Heat of formation + Delta-G solvation = -100.179093 kcal Electronic energy + Delta-G solvation = -27579.578399 eV Core-core repulsion = 23534.206484 eV Total energy + Delta-G solvation = -4045.371915 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.98300 -40.38864 -38.54848 -36.84911 -36.40542 -34.94296 -32.85052 -32.20874 -31.28375 -30.96562 -30.22334 -27.33959 -25.22306 -24.16567 -23.47961 -23.14777 -22.93793 -21.33397 -20.43653 -19.40051 -18.31547 -18.13557 -17.47065 -17.07411 -16.84410 -16.42959 -15.79165 -14.94858 -14.83448 -14.57257 -14.51578 -14.08844 -13.92857 -13.84163 -13.67466 -13.61143 -13.17416 -13.14120 -12.98203 -12.81445 -12.32254 -12.17806 -12.00206 -11.97549 -11.67759 -11.55546 -11.19270 -10.88150 -10.82425 -10.81047 -10.56764 -10.23640 -10.12396 -10.10418 -9.81326 -9.71754 -9.27434 -8.66592 -8.48442 -8.29763 -7.53869 -6.42956 -4.12351 0.38061 1.11317 2.17981 2.33741 2.63052 2.83486 3.41796 3.44723 3.53968 3.62256 4.37619 4.46847 4.50727 4.54432 4.59848 4.66131 4.75367 4.87368 4.99543 5.07252 5.13790 5.26219 5.28671 5.31021 5.38192 5.57186 5.58283 5.62794 5.72567 5.84042 6.01005 6.04755 6.10515 6.21088 6.21912 6.35432 6.54104 6.66888 6.84080 6.95009 7.13929 7.17853 7.38150 7.47847 7.50208 7.75974 7.98996 8.05145 8.40965 8.49986 8.80014 9.57219 10.94788 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021111 B = 0.001891 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.010286 B =14803.766054 C =15305.760045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.063 3.937 3 O -0.354 6.354 4 C 0.515 3.485 5 O -0.514 6.514 6 C -0.156 4.156 7 C -0.032 4.032 8 C -0.164 4.164 9 C 0.195 3.805 10 N -0.682 5.682 11 C 0.514 3.486 12 O -0.497 6.497 13 C 0.043 3.957 14 N -0.663 5.663 15 C 0.205 3.795 16 H -0.005 1.005 17 C -0.597 4.597 18 H 0.056 0.944 19 C 0.025 3.975 20 N -0.907 5.907 21 Si 1.066 2.934 22 H -0.283 1.283 23 H -0.289 1.289 24 H -0.286 1.286 25 C -0.105 4.105 26 C -0.122 4.122 27 C -0.138 4.138 28 C -0.039 4.039 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.140 0.860 35 H 0.136 0.864 36 H 0.414 0.586 37 H 0.055 0.945 38 H 0.097 0.903 39 H 0.346 0.654 40 H 0.269 0.731 41 H 0.018 0.982 42 H 0.059 0.941 43 H 0.018 0.982 44 H 0.061 0.939 45 H 0.048 0.952 46 H 0.150 0.850 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.115 -23.034 9.344 25.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.011 4.011 3 O -0.271 6.271 4 C 0.361 3.639 5 O -0.404 6.404 6 C -0.158 4.158 7 C -0.051 4.051 8 C -0.184 4.184 9 C 0.099 3.901 10 N -0.328 5.328 11 C 0.302 3.698 12 O -0.369 6.369 13 C -0.090 4.090 14 N -0.296 5.296 15 C 0.097 3.903 16 H 0.012 0.988 17 C -0.635 4.635 18 H 0.074 0.926 19 C -0.180 4.180 20 N -0.543 5.543 21 Si 0.894 3.106 22 H -0.209 1.209 23 H -0.215 1.215 24 H -0.213 1.213 25 C -0.144 4.144 26 C -0.179 4.179 27 C -0.159 4.159 28 C -0.057 4.057 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.157 0.843 35 H 0.154 0.846 36 H 0.250 0.750 37 H 0.072 0.928 38 H 0.115 0.885 39 H 0.165 0.835 40 H 0.080 0.920 41 H 0.037 0.963 42 H 0.078 0.922 43 H 0.037 0.963 44 H 0.080 0.920 45 H 0.068 0.932 46 H 0.167 0.833 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -4.976 -21.805 8.515 23.932 hybrid contribution 1.163 -1.706 0.611 2.153 sum -3.813 -23.511 9.126 25.507 Atomic orbital electron populations 1.21817 0.92446 1.03046 1.03749 1.23043 0.95450 0.79927 1.02652 1.86561 1.23856 1.32460 1.84228 1.21115 0.80520 0.89866 0.72408 1.90826 1.60411 1.42567 1.46576 1.19035 0.94028 0.89891 1.12879 1.20978 0.93194 0.97230 0.93725 1.20871 0.99934 0.90984 1.06651 1.18107 0.92765 0.84523 0.94726 1.43723 1.29792 1.07372 1.51941 1.21356 0.85180 0.86356 0.76889 1.90702 1.20694 1.81700 1.43759 1.21872 0.95726 0.89185 1.02177 1.60443 1.43185 1.03165 1.22797 1.19311 0.92030 0.84292 0.94673 0.98795 1.21907 1.23337 1.08479 1.09796 0.92607 1.25721 0.95240 0.95685 1.01346 1.70825 1.16101 1.42630 1.24711 0.83581 0.75607 0.76241 0.75173 1.20889 1.21518 1.21253 1.21505 0.96534 1.00141 0.96243 1.21443 0.96812 0.99753 0.99898 1.21367 0.94020 0.98323 1.02141 1.21365 1.00313 0.90887 0.93181 0.91362 0.91297 0.90161 0.91145 0.91175 0.84255 0.84598 0.75005 0.92779 0.88504 0.83484 0.91958 0.96335 0.92200 0.96308 0.92030 0.93249 0.83251 0.84173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 10.29 37.16 0.38 -0.43 16 2 C 0.06 0.49 6.20 37.16 0.23 0.72 16 3 O -0.35 -3.64 9.46 -40.62 -0.38 -4.03 16 4 C 0.51 6.03 7.89 34.49 0.27 6.30 16 5 O -0.51 -6.98 16.13 -19.27 -0.31 -7.29 16 6 C -0.16 -1.73 5.88 -104.96 -0.62 -2.35 16 7 C -0.03 -0.32 9.58 -39.21 -0.38 -0.70 16 8 C -0.16 -1.53 9.94 -39.46 -0.39 -1.92 16 9 C 0.20 2.18 6.28 -83.74 -0.53 1.66 16 10 N -0.68 -7.25 5.31 -9.86 -0.05 -7.30 16 11 C 0.51 7.43 7.69 -10.99 -0.08 7.35 16 12 O -0.50 -8.90 13.60 5.56 0.08 -8.82 16 13 C 0.04 0.67 6.00 -4.98 -0.03 0.64 16 14 N -0.66 -13.40 5.25 -109.23 -0.57 -13.97 16 15 C 0.20 4.79 1.92 -68.86 -0.13 4.65 16 16 H -0.01 -0.13 7.05 -51.93 -0.37 -0.50 16 17 C -0.60 -15.78 7.21 -34.44 -0.25 -16.03 16 18 H 0.06 1.51 7.69 -52.49 -0.40 1.11 16 19 C 0.03 0.68 5.17 -17.82 -0.09 0.59 16 20 N -0.91 -25.92 13.03 55.43 0.72 -25.20 16 21 Si 1.07 24.51 29.92 -169.99 -5.09 19.42 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.41 7.11 56.52 0.40 -6.00 16 24 H -0.29 -6.37 7.11 56.52 0.40 -5.96 16 25 C -0.11 -2.35 5.49 -26.73 -0.15 -2.50 16 26 C -0.12 -2.60 9.52 37.16 0.35 -2.25 16 27 C -0.14 -1.68 8.66 -39.46 -0.34 -2.02 16 28 C -0.04 -0.42 9.61 -39.21 -0.38 -0.80 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.14 1.25 7.64 -52.49 -0.40 0.85 16 35 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 36 H 0.41 2.97 8.82 -40.82 -0.36 2.61 16 37 H 0.05 0.79 7.97 -51.92 -0.41 0.38 16 38 H 0.10 1.37 7.53 -51.93 -0.39 0.97 16 39 H 0.35 7.42 7.83 -39.29 -0.31 7.11 16 40 H 0.27 7.62 6.13 -40.82 -0.25 7.36 16 41 H 0.02 0.36 7.53 -51.93 -0.39 -0.03 16 42 H 0.06 1.47 6.48 -51.93 -0.34 1.13 16 43 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.06 1.44 7.13 -51.92 -0.37 1.07 16 45 H 0.05 1.03 7.69 -51.93 -0.40 0.63 16 46 H 0.15 2.05 6.28 -52.49 -0.33 1.72 16 47 H 0.14 1.33 7.60 -52.49 -0.40 0.93 16 LS Contribution 391.62 15.07 5.90 5.90 Total: -1.00 -32.09 391.62 -8.71 -40.80 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -6.87 Total: 7.58 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: -2.12 Total: -7.09 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: 0.10 Total: -46.47 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -0.62 Total: -20.14 kcal Atomic # 14 Polarization: 24.51 SS G_CDS: -5.09 Total: 19.42 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.09 -8.71 -40.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568997400.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.381 kcal (2) G-P(sol) polarization free energy of solvation -32.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds