Wall clock time and date at job start Tue Mar 31 2020 17:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45199 * 109.47176 * 2 1 4 4 C 1.34747 * 117.00227 * 179.97438 * 3 2 1 5 5 O 1.21510 * 119.99899 * 359.97438 * 4 3 2 6 6 C 1.47463 * 120.00394 * 180.02562 * 4 3 2 7 7 C 1.39806 * 120.07906 * 180.02562 * 6 4 3 8 8 C 1.37641 * 119.91854 * 180.02562 * 7 6 4 9 9 C 1.39156 * 120.08165 * 359.97438 * 8 7 6 10 10 N 1.39408 * 119.92235 * 180.02562 * 9 8 7 11 11 C 1.34776 * 120.00238 * 144.22288 * 10 9 8 12 12 O 1.21275 * 119.99916 * 4.54790 * 11 10 9 13 13 C 1.50698 * 120.00338 * 184.54281 * 11 10 9 14 14 N 1.46892 * 109.47309 * 179.97438 * 13 11 10 15 15 C 1.46897 * 111.00097 * 183.36081 * 14 13 11 16 16 H 1.08998 * 109.47533 * 35.08946 * 15 14 13 17 17 C 1.50703 * 109.47275 * 155.09429 * 15 14 13 18 18 H 1.07998 * 119.99755 * 5.05640 * 17 15 14 19 19 C 1.37880 * 119.99938 * 185.06296 * 17 15 14 20 20 N 1.31512 * 120.00209 * 10.78652 * 19 17 15 21 21 Si 1.86805 * 119.99825 * 190.79397 * 19 17 15 22 22 H 1.48495 * 109.46813 * 179.97438 * 21 19 17 23 23 H 1.48496 * 109.46833 * 299.99537 * 21 19 17 24 24 H 1.48496 * 109.47075 * 59.99381 * 21 19 17 25 25 C 1.53000 * 109.47249 * 275.09049 * 15 14 13 26 26 C 1.52997 * 109.47250 * 300.90975 * 25 15 14 27 27 C 1.39148 * 120.15595 * 0.27635 * 9 8 7 28 28 C 1.37653 * 120.07842 * 359.44693 * 27 9 8 29 29 H 1.09000 * 109.47632 * 300.00094 * 1 2 3 30 30 H 1.08999 * 109.47135 * 60.00375 * 1 2 3 31 31 H 1.08995 * 109.47306 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47207 * 239.99394 * 2 1 3 33 33 H 1.09004 * 109.46831 * 119.99288 * 2 1 3 34 34 H 1.07992 * 120.04132 * 359.97438 * 7 6 4 35 35 H 1.08001 * 119.96581 * 179.97438 * 8 7 6 36 36 H 0.97002 * 120.00157 * 324.21829 * 10 9 8 37 37 H 1.09008 * 109.46694 * 60.00251 * 13 11 10 38 38 H 1.08998 * 109.47191 * 300.00476 * 13 11 10 39 39 H 1.00903 * 111.00468 * 307.31496 * 14 13 11 40 40 H 0.97001 * 120.00049 * 358.03032 * 20 19 17 41 41 H 1.09004 * 109.47052 * 60.90609 * 25 15 14 42 42 H 1.09003 * 109.47797 * 180.90364 * 25 15 14 43 43 H 1.09005 * 109.47143 * 183.49117 * 26 25 15 44 44 H 1.09008 * 109.46926 * 303.48462 * 26 25 15 45 45 H 1.08994 * 109.47510 * 63.48570 * 26 25 15 46 46 H 1.07993 * 119.96126 * 179.70711 * 27 9 8 47 47 H 1.07997 * 120.04085 * 180.24702 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3498 1.5455 0.0005 5 8 4.0900 0.5819 0.0015 6 6 3.9135 2.9082 0.0011 7 6 5.2993 3.0932 0.0012 8 6 5.8219 4.3666 0.0023 9 6 4.9727 5.4690 0.0028 10 7 5.5056 6.7572 0.0034 11 6 4.8881 7.7422 -0.6785 12 8 3.8263 7.5286 -1.2240 13 6 5.5171 9.1091 -0.7630 14 7 4.6553 9.9965 -1.5552 15 6 5.2754 11.3172 -1.7263 16 1 6.3556 11.2027 -1.8155 17 6 4.7345 11.9684 -2.9731 18 1 3.9447 11.4898 -3.5331 19 6 5.2480 13.1751 -3.3989 20 7 6.3425 13.6545 -2.8496 21 14 4.3889 14.1289 -4.7560 22 1 5.1347 15.3840 -5.0272 23 1 4.3438 13.3030 -5.9893 24 1 3.0050 14.4581 -4.3299 25 6 4.9539 12.1926 -0.5134 26 6 3.4368 12.3348 -0.3747 27 6 3.5930 5.2886 0.0081 28 6 3.0633 4.0181 0.0012 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 5.9589 2.2382 0.0011 35 1 6.8922 4.5104 0.0027 36 1 6.3207 6.9447 0.4946 37 1 6.4939 9.0306 -1.2404 38 1 5.6349 9.5175 0.2407 39 1 4.4337 9.5827 -2.4484 40 1 6.7725 13.1734 -2.1254 41 1 5.3591 11.7297 0.3865 42 1 5.4004 13.1779 -0.6476 43 1 3.2090 13.0083 0.4515 44 1 3.0240 12.7405 -1.2985 45 1 2.9966 11.3572 -0.1786 46 1 2.9369 6.1464 0.0133 47 1 1.9923 3.8788 0.0013 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568997400.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:02 Heat of formation + Delta-G solvation = -119.791895 kcal Electronic energy + Delta-G solvation = -27580.428873 eV Core-core repulsion = 23534.206484 eV Total energy + Delta-G solvation = -4046.222389 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.90759 -41.36400 -39.54207 -38.14930 -37.66905 -35.96970 -34.62063 -32.87270 -32.66900 -32.08505 -31.22146 -28.85310 -26.67183 -25.49686 -25.06652 -24.00159 -23.69429 -22.26146 -21.52004 -21.14793 -19.35739 -19.14896 -18.81939 -17.99544 -17.79472 -17.61830 -17.00445 -16.16423 -16.09769 -15.65352 -15.61386 -15.36294 -15.25224 -15.16963 -14.90442 -14.62328 -14.51388 -14.00594 -13.74548 -13.70971 -13.60016 -13.50551 -13.39008 -13.07410 -12.95620 -12.62128 -12.58063 -12.39114 -11.98842 -11.95641 -11.88144 -11.73720 -11.60058 -11.57544 -11.50189 -10.94550 -10.64080 -10.31937 -10.10935 -9.39842 -9.16051 -8.56996 -6.25923 -0.50247 0.29584 1.21047 1.55666 1.57756 1.58629 1.61965 1.80871 1.84961 2.58093 2.69137 3.22406 3.50055 3.59152 3.62343 3.81448 3.87586 3.99358 4.05151 4.18510 4.29240 4.30758 4.32566 4.36917 4.45450 4.49571 4.58067 4.74204 4.77237 4.90919 4.92971 5.00649 5.03550 5.11782 5.16237 5.20646 5.22597 5.28940 5.38340 5.39947 5.54108 5.72171 5.78782 5.88527 6.08756 6.25475 6.50676 6.56973 6.61391 6.78055 7.01930 7.49934 8.81721 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021111 B = 0.001891 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.010286 B =14803.766054 C =15305.760045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.054 3.946 3 O -0.358 6.358 4 C 0.516 3.484 5 O -0.537 6.537 6 C -0.165 4.165 7 C -0.033 4.033 8 C -0.148 4.148 9 C 0.182 3.818 10 N -0.661 5.661 11 C 0.521 3.479 12 O -0.536 6.536 13 C 0.043 3.957 14 N -0.667 5.667 15 C 0.209 3.791 16 H -0.025 1.025 17 C -0.602 4.602 18 H 0.043 0.957 19 C -0.019 4.019 20 N -0.930 5.930 21 Si 1.105 2.895 22 H -0.286 1.286 23 H -0.276 1.276 24 H -0.275 1.275 25 C -0.100 4.100 26 C -0.112 4.112 27 C -0.153 4.153 28 C -0.038 4.038 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.102 0.898 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.152 0.848 35 H 0.169 0.831 36 H 0.432 0.568 37 H 0.068 0.932 38 H 0.116 0.884 39 H 0.336 0.664 40 H 0.261 0.739 41 H 0.044 0.956 42 H 0.033 0.967 43 H 0.041 0.959 44 H 0.034 0.966 45 H 0.053 0.947 46 H 0.131 0.869 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.982 -24.258 10.139 26.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.019 4.019 3 O -0.275 6.275 4 C 0.363 3.637 5 O -0.429 6.429 6 C -0.167 4.167 7 C -0.052 4.052 8 C -0.168 4.168 9 C 0.086 3.914 10 N -0.308 5.308 11 C 0.309 3.691 12 O -0.411 6.411 13 C -0.089 4.089 14 N -0.299 5.299 15 C 0.101 3.899 16 H -0.007 1.007 17 C -0.641 4.641 18 H 0.062 0.938 19 C -0.219 4.219 20 N -0.567 5.567 21 Si 0.928 3.072 22 H -0.211 1.211 23 H -0.201 1.201 24 H -0.201 1.201 25 C -0.139 4.139 26 C -0.170 4.170 27 C -0.173 4.173 28 C -0.056 4.056 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.120 0.880 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.170 0.830 35 H 0.186 0.814 36 H 0.272 0.728 37 H 0.086 0.914 38 H 0.134 0.866 39 H 0.154 0.846 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.052 0.948 43 H 0.060 0.940 44 H 0.054 0.946 45 H 0.072 0.928 46 H 0.149 0.851 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -4.828 -23.064 9.352 25.352 hybrid contribution 1.110 -1.465 0.418 1.885 sum -3.718 -24.530 9.770 26.665 Atomic orbital electron populations 1.21839 0.90484 1.04480 1.03688 1.23334 0.96999 0.78754 1.02818 1.86566 1.23107 1.34089 1.83758 1.21236 0.80850 0.89816 0.71807 1.90808 1.60958 1.43228 1.47892 1.19178 0.94732 0.89618 1.13150 1.21208 0.92910 0.98006 0.93048 1.21119 1.01247 0.89794 1.04656 1.18240 0.92718 0.84954 0.95501 1.43384 1.29917 1.06542 1.50993 1.21062 0.84610 0.86529 0.76857 1.90703 1.22406 1.82281 1.45733 1.21923 0.95461 0.89210 1.02300 1.60325 1.44217 1.02846 1.22536 1.19133 0.90728 0.86021 0.94063 1.00748 1.22182 1.22543 1.08529 1.10800 0.93825 1.26869 0.95245 0.96838 1.02974 1.70922 1.17257 1.43111 1.25457 0.83061 0.75179 0.75247 0.73666 1.21131 1.20139 1.20075 1.21399 0.97112 0.98630 0.96774 1.21332 0.95876 1.00331 0.99426 1.21294 0.94587 0.98100 1.03353 1.21392 1.00851 0.90459 0.92932 0.91240 0.91493 0.87966 0.91168 0.90878 0.83026 0.81396 0.72772 0.91405 0.86622 0.84611 0.92865 0.93693 0.94816 0.94035 0.94639 0.92813 0.85149 0.83394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 10.29 71.98 0.74 -0.62 16 2 C 0.05 0.79 6.20 71.98 0.45 1.24 16 3 O -0.36 -7.18 9.46 -56.58 -0.54 -7.71 16 4 C 0.52 11.76 7.89 70.25 0.55 12.31 16 5 O -0.54 -14.24 16.13 19.80 0.32 -13.92 16 6 C -0.16 -3.49 5.88 -20.09 -0.12 -3.61 16 7 C -0.03 -0.59 9.58 22.51 0.22 -0.38 16 8 C -0.15 -2.36 9.94 22.35 0.22 -2.13 16 9 C 0.18 3.75 6.28 38.38 0.24 3.99 16 10 N -0.66 -12.63 5.31 -303.49 -1.61 -14.24 16 11 C 0.52 14.42 7.69 87.66 0.67 15.09 16 12 O -0.54 -19.15 13.60 -3.01 -0.04 -19.19 16 13 C 0.04 1.27 6.00 85.56 0.51 1.79 16 14 N -0.67 -26.74 5.25 -499.48 -2.62 -29.36 16 15 C 0.21 9.78 1.92 44.17 0.08 9.87 16 16 H -0.02 -1.25 7.05 -2.39 -0.02 -1.26 16 17 C -0.60 -32.18 7.21 25.60 0.18 -31.99 16 18 H 0.04 2.39 7.69 -2.91 -0.02 2.37 16 19 C -0.02 -1.06 5.17 84.66 0.44 -0.62 16 20 N -0.93 -53.80 13.03 21.45 0.28 -53.52 16 21 Si 1.10 49.46 29.92 68.60 2.05 51.51 16 22 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 23 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 24 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 25 C -0.10 -4.41 5.49 30.59 0.17 -4.25 16 26 C -0.11 -4.69 9.52 71.98 0.69 -4.00 16 27 C -0.15 -3.65 8.66 22.35 0.19 -3.46 16 28 C -0.04 -0.80 9.61 22.51 0.22 -0.58 16 29 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 34 H 0.15 2.38 7.64 -2.91 -0.02 2.35 16 35 H 0.17 1.57 8.06 -2.91 -0.02 1.55 16 36 H 0.43 4.87 8.82 -92.71 -0.82 4.05 16 37 H 0.07 1.86 7.97 -2.38 -0.02 1.84 16 38 H 0.12 2.96 7.53 -2.39 -0.02 2.94 16 39 H 0.34 14.54 7.83 -89.69 -0.70 13.84 16 40 H 0.26 15.05 6.13 -92.71 -0.57 14.48 16 41 H 0.04 1.71 7.53 -2.38 -0.02 1.69 16 42 H 0.03 1.65 6.48 -2.39 -0.02 1.63 16 43 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 44 H 0.03 1.64 7.13 -2.38 -0.02 1.62 16 45 H 0.05 2.17 7.69 -2.39 -0.02 2.15 16 46 H 0.13 3.65 6.28 -2.91 -0.02 3.63 16 47 H 0.15 2.79 7.60 -2.91 -0.02 2.76 16 Total: -1.00 -70.02 391.62 2.99 -67.04 By element: Atomic # 1 Polarization: 27.08 SS G_CDS: -0.31 Total: 26.77 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: 5.46 Total: -7.37 kcal Atomic # 7 Polarization: -93.17 SS G_CDS: -3.95 Total: -97.12 kcal Atomic # 8 Polarization: -40.57 SS G_CDS: -0.26 Total: -40.83 kcal Atomic # 14 Polarization: 49.46 SS G_CDS: 2.05 Total: 51.51 kcal Total: -70.02 2.99 -67.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568997400.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.755 kcal (2) G-P(sol) polarization free energy of solvation -70.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds