Wall clock time and date at job start Tue Mar 31 2020 18:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47251 * 2 1 4 4 N 1.46496 * 109.47438 * 120.00199 * 2 1 3 5 5 C 1.46499 * 120.00405 * 119.20144 * 4 2 1 6 6 C 1.50696 * 109.47524 * 270.00488 * 5 4 2 7 7 H 1.08002 * 120.00029 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00334 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99840 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00191 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47204 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.47053 * 120.00197 * 10 8 6 13 13 H 1.48498 * 109.47299 * 239.99969 * 10 8 6 14 14 C 1.34784 * 120.00001 * 299.21091 * 4 2 1 15 15 O 1.21285 * 119.99498 * 5.29724 * 14 4 2 16 16 C 1.50693 * 120.00135 * 185.30103 * 14 4 2 17 17 N 1.46500 * 109.47056 * 179.62060 * 16 14 4 18 18 C 1.34698 * 123.06813 * 89.99913 * 17 16 14 19 19 O 1.21226 * 126.39051 * 11.92812 * 18 17 16 20 20 C 1.53785 * 107.21749 * 191.90196 * 18 17 16 21 21 H 1.08998 * 113.73210 * 212.29583 * 20 18 17 22 22 C 1.53078 * 104.79176 * 87.26354 * 20 18 17 23 23 C 1.48939 * 113.36798 * 214.76643 * 22 20 18 24 24 C 1.28895 * 124.82288 * 17.41393 * 23 22 20 25 25 C 1.49604 * 123.47191 * 357.80792 * 24 23 22 26 26 C 1.49324 * 113.59094 * 11.11529 * 25 24 23 27 27 H 1.08996 * 107.42013 * 205.20068 * 26 25 24 28 28 C 1.35186 * 123.06944 * 270.00250 * 17 16 14 29 29 O 1.21228 * 126.85999 * 9.73702 * 28 17 16 30 30 H 1.08998 * 109.47086 * 306.61956 * 1 2 3 31 31 H 1.09000 * 109.46687 * 66.61190 * 1 2 3 32 32 H 1.08993 * 109.47053 * 186.61304 * 1 2 3 33 33 H 1.09006 * 109.46998 * 240.00284 * 2 1 3 34 34 H 1.08998 * 109.46994 * 173.85348 * 3 2 1 35 35 H 1.09003 * 109.47162 * 293.84995 * 3 2 1 36 36 H 1.08993 * 109.46990 * 53.85776 * 3 2 1 37 37 H 1.09003 * 109.46743 * 30.00945 * 5 4 2 38 38 H 1.08998 * 109.46815 * 150.00386 * 5 4 2 39 39 H 0.96998 * 120.00083 * 180.02562 * 9 8 6 40 40 H 1.09003 * 109.47113 * 59.62601 * 16 14 4 41 41 H 1.08999 * 109.47444 * 299.62566 * 16 14 4 42 42 H 1.09006 * 108.70359 * 335.77108 * 22 20 18 43 43 H 1.09002 * 108.70316 * 93.88524 * 22 20 18 44 44 H 1.08003 * 117.55208 * 197.44779 * 23 22 20 45 45 H 1.07995 * 118.16777 * 177.76779 * 24 23 22 46 46 H 1.09000 * 108.63994 * 250.09563 * 25 24 23 47 47 H 1.09002 * 108.64210 * 132.13664 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.8462 -1.8918 1.0618 6 6 1.9608 -3.1108 1.0270 7 1 0.8887 -3.0017 1.0975 8 6 2.5194 -4.3654 0.9042 9 7 3.8250 -4.4982 0.8179 10 14 1.4220 -5.8764 0.8619 11 1 0.0012 -5.4596 0.9758 12 1 1.6242 -6.5992 -0.4194 13 1 1.7681 -6.7715 1.9951 14 6 1.7060 -0.2210 2.4202 15 8 0.9431 0.7150 2.5341 16 6 2.3047 -0.8587 3.6473 17 7 1.8193 -0.1663 4.8437 18 6 0.7013 -0.5304 5.5007 19 8 0.0744 -1.5556 5.3404 20 6 0.3688 0.5967 6.4927 21 1 -0.1056 0.2480 7.4100 22 6 -0.4823 1.5846 5.6908 23 6 -0.2518 3.0063 6.0700 24 6 0.7704 3.4364 6.7270 25 6 1.8540 2.5440 7.2441 26 6 1.7861 1.1508 6.7109 27 1 2.2750 0.4999 7.4356 28 6 2.4525 0.8963 5.3889 29 8 3.3743 1.5192 4.9073 30 1 -0.3633 0.6130 0.8248 31 1 -0.3633 0.4079 -0.9433 32 1 -0.3633 -1.0208 0.1183 33 1 1.8933 -0.5138 -0.8901 34 1 3.1245 1.4445 0.1100 35 1 1.7694 1.9236 -0.9399 36 1 1.5898 1.9871 0.8298 37 1 3.4222 -1.8346 0.1381 38 1 3.5265 -1.9610 1.9105 39 1 4.2180 -5.3808 0.7311 40 1 3.3913 -0.7859 3.6012 41 1 2.0124 -1.9079 3.6909 42 1 -0.2536 1.4637 4.6319 43 1 -1.5346 1.3485 5.8496 44 1 -0.9966 3.7298 5.7726 45 1 0.8474 4.4975 6.9127 46 1 1.7840 2.5047 8.3311 47 1 2.8184 2.9740 6.9733 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569331491.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:38 Heat of formation + Delta-G solvation = -78.095346 kcal Electronic energy + Delta-G solvation = -30852.330179 eV Core-core repulsion = 26807.915888 eV Total energy + Delta-G solvation = -4044.414291 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.27050 -39.36679 -38.42353 -37.51101 -35.75007 -35.15883 -33.32573 -32.32561 -31.51135 -31.29810 -27.87682 -26.92760 -26.62033 -25.00254 -24.05042 -22.95110 -21.92091 -21.74306 -19.73249 -18.35788 -18.04321 -17.04568 -16.84099 -16.47690 -16.29040 -15.96588 -15.65387 -15.16621 -14.73065 -14.51436 -14.37294 -14.28494 -14.11674 -13.61737 -13.43761 -13.28854 -12.99921 -12.87514 -12.74746 -12.57984 -12.29241 -12.03694 -11.95260 -11.87929 -11.52880 -11.35975 -11.34835 -10.96077 -10.93501 -10.70470 -10.66046 -10.45598 -10.21499 -10.16759 -9.92150 -9.75475 -9.69629 -9.13082 -8.77550 -8.57455 -7.77636 -6.21855 -4.29732 1.65582 2.18144 2.45969 2.79965 3.21694 3.24403 3.30715 3.37264 3.76429 3.87779 4.14122 4.19214 4.32695 4.53000 4.87115 4.93325 5.02845 5.10209 5.14960 5.16389 5.23536 5.44137 5.48566 5.54613 5.59222 5.64054 5.69342 5.71237 5.82138 5.85121 5.91292 5.97353 6.06810 6.18884 6.34361 6.45140 6.46019 6.71594 6.73905 6.79876 6.83401 6.92456 7.10422 7.41063 7.51200 7.73873 7.89092 7.99833 8.26376 8.74359 8.91572 9.39313 10.84680 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013613 B = 0.004208 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.424656 B = 6652.479683 C = 7439.119361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.150 3.850 3 C -0.163 4.163 4 N -0.586 5.586 5 C 0.234 3.766 6 C -0.539 4.539 7 H 0.063 0.937 8 C 0.066 3.934 9 N -0.891 5.891 10 Si 0.896 3.104 11 H -0.271 1.271 12 H -0.282 1.282 13 H -0.282 1.282 14 C 0.512 3.488 15 O -0.561 6.561 16 C 0.081 3.919 17 N -0.565 5.565 18 C 0.529 3.471 19 O -0.467 6.467 20 C -0.100 4.100 21 H 0.131 0.869 22 C -0.094 4.094 23 C -0.141 4.141 24 C -0.158 4.158 25 C -0.070 4.070 26 C -0.125 4.125 27 H 0.113 0.887 28 C 0.545 3.455 29 O -0.469 6.469 30 H 0.071 0.929 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.085 0.915 34 H 0.050 0.950 35 H 0.055 0.945 36 H 0.070 0.930 37 H 0.039 0.961 38 H 0.036 0.964 39 H 0.265 0.735 40 H 0.115 0.885 41 H 0.133 0.867 42 H 0.098 0.902 43 H 0.085 0.915 44 H 0.108 0.892 45 H 0.111 0.889 46 H 0.088 0.912 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.119 12.796 11.346 17.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.046 3.954 3 C -0.221 4.221 4 N -0.317 5.317 5 C 0.114 3.886 6 C -0.578 4.578 7 H 0.081 0.919 8 C -0.137 4.137 9 N -0.529 5.529 10 Si 0.723 3.277 11 H -0.196 1.196 12 H -0.208 1.208 13 H -0.207 1.207 14 C 0.298 3.702 15 O -0.442 6.442 16 C -0.043 4.043 17 N -0.308 5.308 18 C 0.317 3.683 19 O -0.337 6.337 20 C -0.122 4.122 21 H 0.149 0.851 22 C -0.131 4.131 23 C -0.159 4.159 24 C -0.176 4.176 25 C -0.107 4.107 26 C -0.146 4.146 27 H 0.131 0.869 28 C 0.333 3.667 29 O -0.339 6.339 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.103 0.897 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.057 0.943 38 H 0.054 0.946 39 H 0.075 0.925 40 H 0.133 0.867 41 H 0.151 0.849 42 H 0.116 0.884 43 H 0.103 0.897 44 H 0.126 0.874 45 H 0.129 0.871 46 H 0.106 0.894 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.161 12.862 10.960 17.403 hybrid contribution -0.346 -1.223 -0.365 1.322 sum -4.508 11.639 10.595 16.372 Atomic orbital electron populations 1.22156 0.95540 1.02625 1.01672 1.20853 0.94327 0.92239 0.87973 1.22171 1.00954 0.96872 1.02142 1.48276 1.51045 1.28460 1.03946 1.19530 0.90031 0.80409 0.98630 1.21538 0.93905 0.90642 1.51680 0.91858 1.24937 0.95069 0.99116 0.94570 1.69928 1.09739 1.23995 1.49217 0.86457 0.80952 0.82507 0.77738 1.19561 1.20837 1.20743 1.20338 0.81575 0.83287 0.84991 1.90522 1.36910 1.30091 1.86692 1.21738 1.01220 0.99073 0.82259 1.46904 1.26183 1.30793 1.26911 1.21587 0.78792 0.86426 0.81461 1.90786 1.51976 1.25136 1.65753 1.22638 0.95913 0.94277 0.99324 0.85071 1.20225 1.00088 0.91491 1.01283 1.21496 0.98691 0.96400 0.99345 1.21695 0.95629 0.99603 1.00685 1.19307 0.99783 0.91085 1.00545 1.21032 0.96024 1.00926 0.96607 0.86932 1.20493 0.81978 0.77917 0.86284 1.90739 1.27330 1.48431 1.67372 0.90966 0.93120 0.92380 0.89726 0.93046 0.92604 0.91086 0.94309 0.94611 0.92514 0.86673 0.84893 0.88362 0.89673 0.87381 0.87074 0.89422 0.89276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 9.01 37.16 0.33 -2.58 16 2 C 0.15 2.80 3.28 -67.93 -0.22 2.58 16 3 C -0.16 -2.74 9.01 37.16 0.33 -2.40 16 4 N -0.59 -12.29 2.41 -167.47 -0.40 -12.70 16 5 C 0.23 5.47 4.96 -5.20 -0.03 5.45 16 6 C -0.54 -13.96 9.39 -34.44 -0.32 -14.28 16 7 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 8 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 9 N -0.89 -24.32 13.29 55.43 0.74 -23.59 16 10 Si 0.90 20.81 29.54 -169.99 -5.02 15.78 16 11 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 14 C 0.51 10.60 7.15 -10.99 -0.08 10.52 16 15 O -0.56 -11.93 12.02 5.55 0.07 -11.86 16 16 C 0.08 1.53 4.61 -5.20 -0.02 1.51 16 17 N -0.56 -9.37 2.03 -115.47 -0.23 -9.60 16 18 C 0.53 8.35 6.72 -9.46 -0.06 8.28 16 19 O -0.47 -8.91 17.58 5.60 0.10 -8.82 16 20 C -0.10 -1.11 4.07 -89.79 -0.37 -1.48 16 21 H 0.13 1.07 8.14 -51.93 -0.42 0.65 16 22 C -0.09 -1.11 5.18 -28.68 -0.15 -1.26 16 23 C -0.14 -1.45 9.75 -36.30 -0.35 -1.81 16 24 C -0.16 -1.48 9.88 -35.99 -0.36 -1.84 16 25 C -0.07 -0.62 5.67 -30.22 -0.17 -0.79 16 26 C -0.12 -1.32 2.39 -93.43 -0.22 -1.55 16 27 H 0.11 0.91 8.11 -51.93 -0.42 0.49 16 28 C 0.54 8.29 7.43 -11.04 -0.08 8.21 16 29 O -0.47 -8.41 17.39 5.60 0.10 -8.31 16 30 H 0.07 1.39 6.27 -51.93 -0.33 1.06 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.08 1.57 7.79 -51.93 -0.40 1.16 16 34 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 1.31 6.47 -51.93 -0.34 0.97 16 37 H 0.04 0.95 7.91 -51.93 -0.41 0.54 16 38 H 0.04 0.85 6.43 -51.93 -0.33 0.52 16 39 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 40 H 0.12 2.08 7.45 -51.93 -0.39 1.69 16 41 H 0.13 2.69 7.74 -51.93 -0.40 2.29 16 42 H 0.10 1.53 6.62 -51.93 -0.34 1.18 16 43 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.11 0.98 8.06 -52.48 -0.42 0.56 16 45 H 0.11 0.86 8.06 -52.49 -0.42 0.44 16 46 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.09 0.84 7.79 -51.93 -0.40 0.44 16 LS Contribution 381.35 15.07 5.75 5.75 Total: -1.00 -31.09 381.35 -7.90 -38.98 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -7.12 Total: 4.13 kcal Atomic # 6 Polarization: 12.09 SS G_CDS: -1.87 Total: 10.23 kcal Atomic # 7 Polarization: -45.98 SS G_CDS: 0.10 Total: -45.88 kcal Atomic # 8 Polarization: -29.25 SS G_CDS: 0.26 Total: -28.99 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.09 -7.90 -38.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569331491.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.111 kcal (2) G-P(sol) polarization free energy of solvation -31.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds