Wall clock time and date at job start Tue Mar 31 2020 18:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47251 * 2 1 4 4 N 1.46496 * 109.47438 * 120.00199 * 2 1 3 5 5 C 1.46499 * 120.00405 * 119.20144 * 4 2 1 6 6 C 1.50696 * 109.47524 * 270.00488 * 5 4 2 7 7 H 1.08002 * 120.00029 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00334 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99840 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00191 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47204 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.47053 * 120.00197 * 10 8 6 13 13 H 1.48498 * 109.47299 * 239.99969 * 10 8 6 14 14 C 1.34784 * 120.00001 * 299.21091 * 4 2 1 15 15 O 1.21285 * 119.99498 * 5.29724 * 14 4 2 16 16 C 1.50693 * 120.00135 * 185.30103 * 14 4 2 17 17 N 1.46500 * 109.47056 * 179.62060 * 16 14 4 18 18 C 1.34698 * 123.06813 * 89.99913 * 17 16 14 19 19 O 1.21226 * 126.39051 * 11.92812 * 18 17 16 20 20 C 1.53785 * 107.21749 * 191.90196 * 18 17 16 21 21 H 1.08998 * 113.73210 * 212.29583 * 20 18 17 22 22 C 1.53078 * 104.79176 * 87.26354 * 20 18 17 23 23 C 1.48939 * 113.36798 * 214.76643 * 22 20 18 24 24 C 1.28895 * 124.82288 * 17.41393 * 23 22 20 25 25 C 1.49604 * 123.47191 * 357.80792 * 24 23 22 26 26 C 1.49324 * 113.59094 * 11.11529 * 25 24 23 27 27 H 1.08996 * 107.42013 * 205.20068 * 26 25 24 28 28 C 1.35186 * 123.06944 * 270.00250 * 17 16 14 29 29 O 1.21228 * 126.85999 * 9.73702 * 28 17 16 30 30 H 1.08998 * 109.47086 * 306.61956 * 1 2 3 31 31 H 1.09000 * 109.46687 * 66.61190 * 1 2 3 32 32 H 1.08993 * 109.47053 * 186.61304 * 1 2 3 33 33 H 1.09006 * 109.46998 * 240.00284 * 2 1 3 34 34 H 1.08998 * 109.46994 * 173.85348 * 3 2 1 35 35 H 1.09003 * 109.47162 * 293.84995 * 3 2 1 36 36 H 1.08993 * 109.46990 * 53.85776 * 3 2 1 37 37 H 1.09003 * 109.46743 * 30.00945 * 5 4 2 38 38 H 1.08998 * 109.46815 * 150.00386 * 5 4 2 39 39 H 0.96998 * 120.00083 * 180.02562 * 9 8 6 40 40 H 1.09003 * 109.47113 * 59.62601 * 16 14 4 41 41 H 1.08999 * 109.47444 * 299.62566 * 16 14 4 42 42 H 1.09006 * 108.70359 * 335.77108 * 22 20 18 43 43 H 1.09002 * 108.70316 * 93.88524 * 22 20 18 44 44 H 1.08003 * 117.55208 * 197.44779 * 23 22 20 45 45 H 1.07995 * 118.16777 * 177.76779 * 24 23 22 46 46 H 1.09000 * 108.63994 * 250.09563 * 25 24 23 47 47 H 1.09002 * 108.64210 * 132.13664 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.8462 -1.8918 1.0618 6 6 1.9608 -3.1108 1.0270 7 1 0.8887 -3.0017 1.0975 8 6 2.5194 -4.3654 0.9042 9 7 3.8250 -4.4982 0.8179 10 14 1.4220 -5.8764 0.8619 11 1 0.0012 -5.4596 0.9758 12 1 1.6242 -6.5992 -0.4194 13 1 1.7681 -6.7715 1.9951 14 6 1.7060 -0.2210 2.4202 15 8 0.9431 0.7150 2.5341 16 6 2.3047 -0.8587 3.6473 17 7 1.8193 -0.1663 4.8437 18 6 0.7013 -0.5304 5.5007 19 8 0.0744 -1.5556 5.3404 20 6 0.3688 0.5967 6.4927 21 1 -0.1056 0.2480 7.4100 22 6 -0.4823 1.5846 5.6908 23 6 -0.2518 3.0063 6.0700 24 6 0.7704 3.4364 6.7270 25 6 1.8540 2.5440 7.2441 26 6 1.7861 1.1508 6.7109 27 1 2.2750 0.4999 7.4356 28 6 2.4525 0.8963 5.3889 29 8 3.3743 1.5192 4.9073 30 1 -0.3633 0.6130 0.8248 31 1 -0.3633 0.4079 -0.9433 32 1 -0.3633 -1.0208 0.1183 33 1 1.8933 -0.5138 -0.8901 34 1 3.1245 1.4445 0.1100 35 1 1.7694 1.9236 -0.9399 36 1 1.5898 1.9871 0.8298 37 1 3.4222 -1.8346 0.1381 38 1 3.5265 -1.9610 1.9105 39 1 4.2180 -5.3808 0.7311 40 1 3.3913 -0.7859 3.6012 41 1 2.0124 -1.9079 3.6909 42 1 -0.2536 1.4637 4.6319 43 1 -1.5346 1.3485 5.8496 44 1 -0.9966 3.7298 5.7726 45 1 0.8474 4.4975 6.9127 46 1 1.7840 2.5047 8.3311 47 1 2.8184 2.9740 6.9733 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569331491.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:37 Heat of formation + Delta-G solvation = -95.717019 kcal Electronic energy + Delta-G solvation = -30853.094312 eV Core-core repulsion = 26807.915888 eV Total energy + Delta-G solvation = -4045.178424 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.44353 -40.98252 -39.73273 -38.51889 -37.28285 -36.63686 -35.14524 -33.76788 -32.80064 -32.22925 -29.39534 -28.70085 -28.08320 -26.10642 -25.14846 -24.74643 -23.24458 -22.94259 -20.98561 -19.89349 -19.08555 -18.75968 -18.30131 -18.05306 -17.43566 -17.24094 -16.89153 -16.56869 -16.35071 -16.08433 -15.87545 -15.45575 -15.25906 -15.04626 -14.56622 -14.50705 -14.44274 -14.24932 -14.05122 -13.71722 -13.66286 -13.52432 -13.42932 -13.30029 -12.97020 -12.85066 -12.79066 -12.71297 -12.28432 -12.25805 -12.16963 -11.94941 -11.68197 -11.56838 -11.39318 -11.18739 -10.96630 -10.68456 -10.34057 -9.85352 -9.53737 -8.26212 -6.40733 0.43069 1.18054 1.35462 1.38984 1.45606 1.48986 1.58462 1.59433 2.24727 2.39510 2.78229 3.03944 3.08559 3.28366 3.52431 3.68277 3.89837 4.01904 4.04395 4.14407 4.17518 4.21103 4.23817 4.27012 4.33373 4.39040 4.53676 4.63808 4.72326 4.78095 4.84230 4.88853 4.93819 4.95007 4.98848 5.06789 5.09060 5.20408 5.23139 5.35350 5.62108 5.67962 5.74034 5.83818 5.98338 6.05786 6.20813 6.46278 6.63226 6.74498 7.17935 7.33135 8.79402 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013613 B = 0.004208 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.424656 B = 6652.479683 C = 7439.119361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.138 3.862 3 C -0.150 4.150 4 N -0.591 5.591 5 C 0.249 3.751 6 C -0.547 4.547 7 H 0.048 0.952 8 C 0.026 3.974 9 N -0.916 5.916 10 Si 0.953 3.047 11 H -0.277 1.277 12 H -0.273 1.273 13 H -0.276 1.276 14 C 0.505 3.495 15 O -0.567 6.567 16 C 0.083 3.917 17 N -0.572 5.572 18 C 0.521 3.479 19 O -0.510 6.510 20 C -0.078 4.078 21 H 0.174 0.826 22 C -0.092 4.092 23 C -0.161 4.161 24 C -0.150 4.150 25 C -0.072 4.072 26 C -0.115 4.115 27 H 0.149 0.851 28 C 0.537 3.463 29 O -0.503 6.503 30 H 0.056 0.944 31 H 0.083 0.917 32 H 0.034 0.966 33 H 0.087 0.913 34 H 0.047 0.953 35 H 0.088 0.912 36 H 0.052 0.948 37 H 0.027 0.973 38 H 0.029 0.971 39 H 0.269 0.731 40 H 0.117 0.883 41 H 0.113 0.887 42 H 0.054 0.946 43 H 0.096 0.904 44 H 0.117 0.883 45 H 0.131 0.869 46 H 0.130 0.870 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.713 13.985 13.098 19.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.035 3.965 3 C -0.208 4.208 4 N -0.322 5.322 5 C 0.128 3.872 6 C -0.585 4.585 7 H 0.066 0.934 8 C -0.175 4.175 9 N -0.555 5.555 10 Si 0.778 3.222 11 H -0.201 1.201 12 H -0.199 1.199 13 H -0.202 1.202 14 C 0.292 3.708 15 O -0.448 6.448 16 C -0.042 4.042 17 N -0.315 5.315 18 C 0.312 3.688 19 O -0.382 6.382 20 C -0.099 4.099 21 H 0.191 0.809 22 C -0.129 4.129 23 C -0.179 4.179 24 C -0.168 4.168 25 C -0.108 4.108 26 C -0.136 4.136 27 H 0.167 0.833 28 C 0.328 3.672 29 O -0.375 6.375 30 H 0.076 0.924 31 H 0.102 0.898 32 H 0.054 0.946 33 H 0.105 0.895 34 H 0.066 0.934 35 H 0.106 0.894 36 H 0.071 0.929 37 H 0.045 0.955 38 H 0.047 0.953 39 H 0.078 0.922 40 H 0.135 0.865 41 H 0.131 0.869 42 H 0.072 0.928 43 H 0.114 0.886 44 H 0.135 0.865 45 H 0.149 0.851 46 H 0.148 0.852 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.761 14.082 12.722 19.566 hybrid contribution -0.146 -1.543 -0.953 1.820 sum -4.907 12.538 11.769 17.883 Atomic orbital electron populations 1.22042 0.94942 1.01032 1.02833 1.21126 0.94851 0.93315 0.87178 1.22043 1.00389 0.95242 1.03088 1.48299 1.50943 1.27981 1.04983 1.19185 0.89716 0.80757 0.97556 1.21646 0.93354 0.91872 1.51644 0.93397 1.25580 0.96172 1.01451 0.94251 1.69996 1.10857 1.24790 1.49820 0.85586 0.78946 0.79547 0.78109 1.20139 1.19862 1.20202 1.20640 0.81479 0.83275 0.85379 1.90516 1.37083 1.30365 1.86858 1.21501 1.01281 0.98250 0.83145 1.47183 1.26984 1.31210 1.26115 1.22556 0.77730 0.86737 0.81778 1.90753 1.52927 1.27212 1.67297 1.22814 0.96421 0.91430 0.99192 0.80900 1.20160 1.00947 0.93005 0.98801 1.21489 1.00062 0.95462 1.00912 1.22000 0.94790 1.00793 0.99191 1.19467 0.99253 0.89245 1.02884 1.21185 0.94977 1.03310 0.94121 0.83332 1.21443 0.81378 0.76726 0.87646 1.90713 1.28895 1.49279 1.68595 0.92450 0.89804 0.94642 0.89467 0.93410 0.89371 0.92890 0.95468 0.95337 0.92158 0.86498 0.86866 0.92804 0.88572 0.86542 0.85131 0.85191 0.89607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.46 9.01 71.98 0.65 -4.82 16 2 C 0.14 5.23 3.28 44.99 0.15 5.38 16 3 C -0.15 -4.95 9.01 71.98 0.65 -4.30 16 4 N -0.59 -25.76 2.41 -802.14 -1.93 -27.69 16 5 C 0.25 12.12 4.96 85.63 0.43 12.54 16 6 C -0.55 -29.19 9.39 25.60 0.24 -28.95 16 7 H 0.05 2.67 7.81 -2.91 -0.02 2.64 16 8 C 0.03 1.41 5.46 84.65 0.46 1.87 16 9 N -0.92 -50.63 13.29 21.45 0.28 -50.35 16 10 Si 0.95 43.12 29.54 68.60 2.03 45.15 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 12 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 13 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 14 C 0.51 21.91 7.15 87.65 0.63 22.54 16 15 O -0.57 -25.09 12.02 -3.04 -0.04 -25.13 16 16 C 0.08 3.34 4.61 85.63 0.39 3.73 16 17 N -0.57 -19.44 2.03 -755.86 -1.53 -20.98 16 18 C 0.52 16.53 6.72 88.68 0.60 17.12 16 19 O -0.51 -20.03 17.58 -2.86 -0.05 -20.08 16 20 C -0.08 -1.55 4.07 -10.25 -0.04 -1.59 16 21 H 0.17 2.08 8.14 -2.39 -0.02 2.06 16 22 C -0.09 -2.07 5.18 29.33 0.15 -1.92 16 23 C -0.16 -2.98 9.75 27.20 0.27 -2.72 16 24 C -0.15 -2.31 9.88 27.41 0.27 -2.04 16 25 C -0.07 -0.97 5.67 28.33 0.16 -0.81 16 26 C -0.12 -2.12 2.39 -12.62 -0.03 -2.15 16 27 H 0.15 1.77 8.11 -2.39 -0.02 1.75 16 28 C 0.54 16.14 7.43 87.44 0.65 16.79 16 29 O -0.50 -18.17 17.39 -2.87 -0.05 -18.22 16 30 H 0.06 2.24 6.27 -2.39 -0.01 2.23 16 31 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.03 1.41 8.14 -2.39 -0.02 1.40 16 33 H 0.09 3.24 7.79 -2.38 -0.02 3.22 16 34 H 0.05 1.59 8.14 -2.39 -0.02 1.58 16 35 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.05 1.95 6.47 -2.39 -0.02 1.93 16 37 H 0.03 1.38 7.91 -2.39 -0.02 1.36 16 38 H 0.03 1.43 6.43 -2.39 -0.02 1.41 16 39 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 40 H 0.12 4.51 7.45 -2.39 -0.02 4.49 16 41 H 0.11 4.94 7.74 -2.39 -0.02 4.92 16 42 H 0.05 1.72 6.62 -2.38 -0.02 1.70 16 43 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.12 1.91 8.06 -2.91 -0.02 1.88 16 45 H 0.13 1.53 8.06 -2.91 -0.02 1.51 16 46 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.09 1.33 7.79 -2.39 -0.02 1.32 16 Total: -1.00 -70.58 381.35 5.30 -65.28 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: 0.97 Total: 21.33 kcal Atomic # 6 Polarization: 25.06 SS G_CDS: 5.62 Total: 30.68 kcal Atomic # 7 Polarization: -95.83 SS G_CDS: -3.18 Total: -99.01 kcal Atomic # 8 Polarization: -63.29 SS G_CDS: -0.14 Total: -63.43 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -70.58 5.30 -65.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569331491.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.438 kcal (2) G-P(sol) polarization free energy of solvation -70.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds