Wall clock time and date at job start Tue Mar 31 2020 17:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47150 * 2 1 4 4 H 1.09001 * 109.47420 * 305.55102 * 3 2 1 5 5 C 1.50698 * 109.47262 * 185.55395 * 3 2 1 6 6 H 1.08007 * 120.00063 * 240.00205 * 5 3 2 7 7 C 1.37883 * 120.00255 * 59.99393 * 5 3 2 8 8 N 1.31508 * 119.99849 * 180.02562 * 7 5 3 9 9 Si 1.86795 * 119.99751 * 0.02562 * 7 5 3 10 10 H 1.48505 * 109.46828 * 269.99783 * 9 7 5 11 11 H 1.48502 * 109.47453 * 29.99553 * 9 7 5 12 12 H 1.48501 * 109.47310 * 149.99879 * 9 7 5 13 13 N 1.46897 * 109.47569 * 65.54913 * 3 2 1 14 14 C 1.46902 * 111.00364 * 200.30957 * 13 3 2 15 15 C 1.50699 * 109.47048 * 185.04370 * 14 13 3 16 16 O 1.21294 * 119.99953 * 359.97438 * 15 14 13 17 17 N 1.34771 * 119.99983 * 180.02562 * 15 14 13 18 18 C 1.40097 * 120.00562 * 174.90838 * 17 15 14 19 19 C 1.38848 * 119.97599 * 153.32370 * 18 17 15 20 20 C 1.38264 * 120.15130 * 179.97438 * 19 18 17 21 21 C 1.38475 * 119.80987 * 0.03573 * 20 19 18 22 22 C 1.38773 * 120.17137 * 359.97438 * 21 20 19 23 23 C 1.38406 * 120.14569 * 359.73499 * 22 21 20 24 24 O 1.36476 * 119.60413 * 179.97438 * 22 21 20 25 25 C 1.42897 * 115.93277 * 68.30894 * 24 22 21 26 26 C 1.52067 * 110.77155 * 275.55394 * 25 24 22 27 27 C 1.52062 * 112.36811 * 64.80409 * 26 25 24 28 28 O 1.36553 * 120.24790 * 179.97438 * 21 20 19 29 29 H 1.09004 * 109.47125 * 64.91268 * 1 2 3 30 30 H 1.09000 * 109.47288 * 184.90999 * 1 2 3 31 31 H 1.09000 * 109.47341 * 304.91224 * 1 2 3 32 32 H 1.09000 * 109.47042 * 239.99537 * 2 1 3 33 33 H 1.08998 * 109.46870 * 119.99993 * 2 1 3 34 34 H 0.97007 * 119.99705 * 179.97438 * 8 7 5 35 35 H 1.00899 * 110.99888 * 324.26862 * 13 3 2 36 36 H 1.09001 * 109.46976 * 305.04017 * 14 13 3 37 37 H 1.09002 * 109.46851 * 65.04496 * 14 13 3 38 38 H 0.97002 * 120.00159 * 354.90317 * 17 15 14 39 39 H 1.07999 * 119.92072 * 359.97438 * 19 18 17 40 40 H 1.08003 * 120.09855 * 180.02562 * 20 19 18 41 41 H 1.08000 * 120.17355 * 180.30972 * 23 22 21 42 42 H 1.09007 * 109.21614 * 35.88423 * 25 24 22 43 43 H 1.08995 * 109.22215 * 155.21813 * 25 24 22 44 44 H 1.08995 * 108.90346 * 185.55293 * 26 25 24 45 45 H 1.09001 * 108.89880 * 304.16281 * 26 25 24 46 46 H 1.08999 * 109.21954 * 55.53252 * 27 26 25 47 47 H 1.09007 * 109.21160 * 174.86244 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5978 1.9842 -0.8361 5 6 3.5407 1.4447 -0.1375 6 1 4.1531 1.8868 0.6346 7 6 4.1320 0.8822 -1.2489 8 7 5.4417 0.8838 -1.3685 9 14 3.0729 0.1181 -2.5844 10 1 2.8539 -1.3190 -2.2807 11 1 1.7641 0.8175 -2.6391 12 1 3.7588 0.2481 -3.8951 13 7 1.6628 2.0953 1.2607 14 6 1.6906 3.5577 1.1252 15 6 1.4203 4.1916 2.4654 16 8 1.2234 3.4937 3.4377 17 7 1.3964 5.5339 2.5835 18 6 1.0406 6.1237 3.8034 19 6 1.5178 7.3864 4.1288 20 6 1.1685 7.9721 5.3316 21 6 0.3413 7.2955 6.2122 22 6 -0.1371 6.0333 5.8898 23 6 0.2061 5.4470 4.6840 24 8 -0.9512 5.3767 6.7666 25 6 -2.2525 5.9374 6.9509 26 6 -2.2189 7.0484 7.9887 27 6 -1.3819 8.2355 7.5387 28 8 -0.0089 7.8653 7.4027 29 1 -0.3633 0.4357 -0.9307 30 1 -0.3634 -1.0239 0.0880 31 1 -0.3634 0.5881 0.8427 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 5.8577 0.4877 -2.1503 35 1 0.7580 1.7784 1.5754 36 1 2.6711 3.8708 0.7664 37 1 0.9262 3.8713 0.4142 38 1 1.6256 6.0918 1.8238 39 1 2.1633 7.9121 3.4409 40 1 1.5398 8.9544 5.5837 41 1 -0.1700 4.4669 4.4304 42 1 -2.6062 6.3427 6.0028 43 1 -2.9360 5.1563 7.2836 44 1 -3.2379 7.3861 8.1776 45 1 -1.8006 6.6540 8.9148 46 1 -1.7536 8.5932 6.5786 47 1 -1.4669 9.0342 8.2757 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572493839.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:47 Heat of formation + Delta-G solvation = -66.039694 kcal Electronic energy + Delta-G solvation = -28627.627122 eV Core-core repulsion = 24583.735603 eV Total energy + Delta-G solvation = -4043.891519 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.14893 -39.99573 -37.70689 -37.60418 -36.43981 -34.56001 -32.84961 -32.46518 -31.76110 -30.52874 -28.88966 -27.59229 -26.76077 -25.44393 -23.44213 -22.55787 -21.92074 -21.90084 -20.36156 -19.90853 -18.71752 -17.94714 -17.39935 -16.86825 -16.54414 -16.17871 -15.61154 -15.57811 -15.29748 -15.03096 -14.48871 -14.36396 -14.21398 -14.11803 -13.91634 -13.72917 -13.36726 -13.11678 -12.96944 -12.54215 -12.41437 -12.34121 -12.16966 -11.80502 -11.60547 -11.53212 -11.15123 -11.06633 -10.68500 -10.63455 -10.41493 -10.37251 -10.11157 -10.03675 -9.57917 -9.40477 -9.25044 -8.86457 -8.57344 -8.02760 -7.48553 -6.08613 -4.06824 0.88913 1.09095 2.68260 2.94681 3.22756 3.23366 3.26529 3.31822 3.34892 3.78394 4.30974 4.36087 4.39585 4.69982 4.76759 4.84200 4.91390 4.96523 4.97757 5.05344 5.06698 5.20007 5.21069 5.37429 5.39748 5.62659 5.65190 5.68663 5.73424 5.74033 5.80961 5.93102 6.00676 6.07304 6.13009 6.24064 6.45038 6.55508 6.64193 6.65622 6.75149 6.93905 7.10196 7.34923 7.42261 7.63724 7.83808 8.12659 8.27363 8.68618 9.02806 9.53454 11.04475 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.023896 B = 0.002318 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.463511 B =12077.602135 C =12877.565614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.133 4.133 3 C 0.192 3.808 4 H 0.001 0.999 5 C -0.502 4.502 6 H 0.081 0.919 7 C 0.068 3.932 8 N -0.898 5.898 9 Si 0.883 3.117 10 H -0.278 1.278 11 H -0.268 1.268 12 H -0.297 1.297 13 N -0.659 5.659 14 C 0.052 3.948 15 C 0.512 3.488 16 O -0.498 6.498 17 N -0.678 5.678 18 C 0.172 3.828 19 C -0.147 4.147 20 C -0.093 4.093 21 C 0.036 3.964 22 C 0.089 3.911 23 C -0.130 4.130 24 O -0.316 6.316 25 C 0.060 3.940 26 C -0.187 4.187 27 C 0.059 3.941 28 O -0.318 6.318 29 H 0.044 0.956 30 H 0.047 0.953 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.264 0.736 35 H 0.328 0.672 36 H 0.115 0.885 37 H 0.051 0.949 38 H 0.413 0.587 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.156 0.844 42 H 0.056 0.944 43 H 0.103 0.897 44 H 0.088 0.912 45 H 0.083 0.917 46 H 0.056 0.944 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.057 17.207 11.694 26.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.171 4.171 3 C 0.083 3.917 4 H 0.018 0.982 5 C -0.540 4.540 6 H 0.099 0.901 7 C -0.134 4.134 8 N -0.537 5.537 9 Si 0.713 3.287 10 H -0.205 1.205 11 H -0.193 1.193 12 H -0.225 1.225 13 N -0.292 5.292 14 C -0.081 4.081 15 C 0.301 3.699 16 O -0.370 6.370 17 N -0.324 5.324 18 C 0.076 3.924 19 C -0.168 4.168 20 C -0.112 4.112 21 C -0.009 4.009 22 C 0.044 3.956 23 C -0.150 4.150 24 O -0.232 6.232 25 C -0.015 4.015 26 C -0.225 4.225 27 C -0.016 4.016 28 O -0.235 6.235 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.147 0.853 36 H 0.133 0.867 37 H 0.069 0.931 38 H 0.250 0.750 39 H 0.154 0.846 40 H 0.155 0.845 41 H 0.173 0.827 42 H 0.075 0.925 43 H 0.121 0.879 44 H 0.107 0.893 45 H 0.102 0.898 46 H 0.074 0.926 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -16.260 16.383 12.732 26.361 hybrid contribution -1.291 0.049 -1.811 2.224 sum -17.551 16.432 10.922 26.407 Atomic orbital electron populations 1.21923 0.98147 1.00759 1.00674 1.22064 0.93010 1.00013 1.02010 1.19630 0.97069 0.89674 0.85289 0.98183 1.21018 0.88957 1.38107 1.05931 0.90050 1.24962 0.94783 0.95828 0.97798 1.69886 1.08883 1.45517 1.29368 0.86934 0.80625 0.79955 0.81144 1.20490 1.19287 1.22483 1.60132 1.34164 1.01400 1.33487 1.21732 1.03747 0.91806 0.90797 1.21400 0.75363 0.80807 0.92380 1.90684 1.45521 1.61539 1.39302 1.43770 1.68671 1.07910 1.12076 1.17641 0.94535 0.92786 0.87468 1.20769 1.02572 0.95628 0.97835 1.20783 0.98777 0.99962 0.91695 1.19077 1.01761 0.92045 0.87968 1.18929 0.95498 0.91084 0.90071 1.21267 0.99256 1.02724 0.91791 1.86405 1.24674 1.51687 1.60452 1.22613 0.83492 0.96978 0.98400 1.22479 1.01493 0.97029 1.01502 1.22600 0.80993 0.96301 1.01681 1.86385 1.26316 1.78855 1.31932 0.93673 0.93430 0.93056 0.92682 0.91052 0.92638 0.85255 0.86702 0.93103 0.75046 0.84626 0.84498 0.82658 0.92520 0.87887 0.89338 0.89811 0.92600 0.88095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.66 9.82 37.16 0.36 -2.30 16 2 C -0.13 -2.82 5.04 -26.73 -0.13 -2.95 16 3 C 0.19 4.33 1.62 -68.87 -0.11 4.22 16 4 H 0.00 0.02 6.99 -51.93 -0.36 -0.35 16 5 C -0.50 -13.73 8.88 -34.44 -0.31 -14.04 16 6 H 0.08 2.48 8.06 -52.48 -0.42 2.06 16 7 C 0.07 1.91 5.45 -17.82 -0.10 1.81 16 8 N -0.90 -27.02 13.96 55.43 0.77 -26.25 16 9 Si 0.88 21.27 24.41 -169.99 -4.15 17.12 16 10 H -0.28 -6.59 6.82 56.52 0.39 -6.20 16 11 H -0.27 -6.10 6.53 56.52 0.37 -5.73 16 12 H -0.30 -7.21 7.11 56.52 0.40 -6.81 16 13 N -0.66 -13.33 5.82 -109.23 -0.64 -13.96 16 14 C 0.05 0.86 5.96 -4.98 -0.03 0.83 16 15 C 0.51 8.13 7.68 -10.99 -0.08 8.05 16 16 O -0.50 -9.69 13.58 5.55 0.08 -9.62 16 17 N -0.68 -8.19 5.37 -9.82 -0.05 -8.25 16 18 C 0.17 2.18 6.40 -83.60 -0.54 1.64 16 19 C -0.15 -1.52 9.94 -39.35 -0.39 -1.91 16 20 C -0.09 -0.98 10.00 -39.48 -0.39 -1.37 16 21 C 0.04 0.45 5.73 -39.30 -0.23 0.23 16 22 C 0.09 1.23 5.73 -39.32 -0.23 1.01 16 23 C -0.13 -1.88 8.65 -39.27 -0.34 -2.22 16 24 O -0.32 -4.33 10.16 -36.73 -0.37 -4.70 16 25 C 0.06 0.54 6.51 36.68 0.24 0.78 16 26 C -0.19 -1.34 5.93 -27.68 -0.16 -1.51 16 27 C 0.06 0.46 6.51 36.68 0.24 0.70 16 28 O -0.32 -3.77 10.16 -36.99 -0.38 -4.14 16 29 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.80 6.30 -51.93 -0.33 0.47 16 32 H 0.06 1.24 3.22 -51.93 -0.17 1.07 16 33 H 0.07 1.55 8.14 -51.93 -0.42 1.12 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.33 6.14 6.37 -39.29 -0.25 5.89 16 36 H 0.12 2.01 7.72 -51.93 -0.40 1.61 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.41 3.52 8.79 -40.82 -0.36 3.16 16 39 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 40 H 0.14 1.11 8.06 -52.48 -0.42 0.69 16 41 H 0.16 2.53 5.94 -52.49 -0.31 2.22 16 42 H 0.06 0.46 7.93 -51.93 -0.41 0.05 16 43 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.06 0.39 7.93 -51.93 -0.41 -0.02 16 47 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 372.56 15.07 5.61 5.61 Total: -1.00 -34.54 372.56 -8.16 -42.70 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -6.84 Total: 8.51 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: -2.20 Total: -7.02 kcal Atomic # 7 Polarization: -48.54 SS G_CDS: 0.08 Total: -48.46 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -0.67 Total: -18.46 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.15 Total: 17.12 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.54 -8.16 -42.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572493839.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.344 kcal (2) G-P(sol) polarization free energy of solvation -34.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds