Wall clock time and date at job start Tue Mar 31 2020 17:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47150 * 2 1 4 4 H 1.09001 * 109.47420 * 305.55102 * 3 2 1 5 5 C 1.50698 * 109.47262 * 185.55395 * 3 2 1 6 6 H 1.08007 * 120.00063 * 240.00205 * 5 3 2 7 7 C 1.37883 * 120.00255 * 59.99393 * 5 3 2 8 8 N 1.31508 * 119.99849 * 180.02562 * 7 5 3 9 9 Si 1.86795 * 119.99751 * 0.02562 * 7 5 3 10 10 H 1.48505 * 109.46828 * 269.99783 * 9 7 5 11 11 H 1.48502 * 109.47453 * 29.99553 * 9 7 5 12 12 H 1.48501 * 109.47310 * 149.99879 * 9 7 5 13 13 N 1.46897 * 109.47569 * 65.54913 * 3 2 1 14 14 C 1.46902 * 111.00364 * 200.30957 * 13 3 2 15 15 C 1.50699 * 109.47048 * 185.04370 * 14 13 3 16 16 O 1.21294 * 119.99953 * 359.97438 * 15 14 13 17 17 N 1.34771 * 119.99983 * 180.02562 * 15 14 13 18 18 C 1.40097 * 120.00562 * 174.90838 * 17 15 14 19 19 C 1.38848 * 119.97599 * 153.32370 * 18 17 15 20 20 C 1.38264 * 120.15130 * 179.97438 * 19 18 17 21 21 C 1.38475 * 119.80987 * 0.03573 * 20 19 18 22 22 C 1.38773 * 120.17137 * 359.97438 * 21 20 19 23 23 C 1.38406 * 120.14569 * 359.73499 * 22 21 20 24 24 O 1.36476 * 119.60413 * 179.97438 * 22 21 20 25 25 C 1.42897 * 115.93277 * 68.30894 * 24 22 21 26 26 C 1.52067 * 110.77155 * 275.55394 * 25 24 22 27 27 C 1.52062 * 112.36811 * 64.80409 * 26 25 24 28 28 O 1.36553 * 120.24790 * 179.97438 * 21 20 19 29 29 H 1.09004 * 109.47125 * 64.91268 * 1 2 3 30 30 H 1.09000 * 109.47288 * 184.90999 * 1 2 3 31 31 H 1.09000 * 109.47341 * 304.91224 * 1 2 3 32 32 H 1.09000 * 109.47042 * 239.99537 * 2 1 3 33 33 H 1.08998 * 109.46870 * 119.99993 * 2 1 3 34 34 H 0.97007 * 119.99705 * 179.97438 * 8 7 5 35 35 H 1.00899 * 110.99888 * 324.26862 * 13 3 2 36 36 H 1.09001 * 109.46976 * 305.04017 * 14 13 3 37 37 H 1.09002 * 109.46851 * 65.04496 * 14 13 3 38 38 H 0.97002 * 120.00159 * 354.90317 * 17 15 14 39 39 H 1.07999 * 119.92072 * 359.97438 * 19 18 17 40 40 H 1.08003 * 120.09855 * 180.02562 * 20 19 18 41 41 H 1.08000 * 120.17355 * 180.30972 * 23 22 21 42 42 H 1.09007 * 109.21614 * 35.88423 * 25 24 22 43 43 H 1.08995 * 109.22215 * 155.21813 * 25 24 22 44 44 H 1.08995 * 108.90346 * 185.55293 * 26 25 24 45 45 H 1.09001 * 108.89880 * 304.16281 * 26 25 24 46 46 H 1.08999 * 109.21954 * 55.53252 * 27 26 25 47 47 H 1.09007 * 109.21160 * 174.86244 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5978 1.9842 -0.8361 5 6 3.5407 1.4447 -0.1375 6 1 4.1531 1.8868 0.6346 7 6 4.1320 0.8822 -1.2489 8 7 5.4417 0.8838 -1.3685 9 14 3.0729 0.1181 -2.5844 10 1 2.8539 -1.3190 -2.2807 11 1 1.7641 0.8175 -2.6391 12 1 3.7588 0.2481 -3.8951 13 7 1.6628 2.0953 1.2607 14 6 1.6906 3.5577 1.1252 15 6 1.4203 4.1916 2.4654 16 8 1.2234 3.4937 3.4377 17 7 1.3964 5.5339 2.5835 18 6 1.0406 6.1237 3.8034 19 6 1.5178 7.3864 4.1288 20 6 1.1685 7.9721 5.3316 21 6 0.3413 7.2955 6.2122 22 6 -0.1371 6.0333 5.8898 23 6 0.2061 5.4470 4.6840 24 8 -0.9512 5.3767 6.7666 25 6 -2.2525 5.9374 6.9509 26 6 -2.2189 7.0484 7.9887 27 6 -1.3819 8.2355 7.5387 28 8 -0.0089 7.8653 7.4027 29 1 -0.3633 0.4357 -0.9307 30 1 -0.3634 -1.0239 0.0880 31 1 -0.3634 0.5881 0.8427 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 5.8577 0.4877 -2.1503 35 1 0.7580 1.7784 1.5754 36 1 2.6711 3.8708 0.7664 37 1 0.9262 3.8713 0.4142 38 1 1.6256 6.0918 1.8238 39 1 2.1633 7.9121 3.4409 40 1 1.5398 8.9544 5.5837 41 1 -0.1700 4.4669 4.4304 42 1 -2.6062 6.3427 6.0028 43 1 -2.9360 5.1563 7.2836 44 1 -3.2379 7.3861 8.1776 45 1 -1.8006 6.6540 8.9148 46 1 -1.7536 8.5932 6.5786 47 1 -1.4669 9.0342 8.2757 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572493839.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:46 Heat of formation + Delta-G solvation = -92.192601 kcal Electronic energy + Delta-G solvation = -28628.761197 eV Core-core repulsion = 24583.735603 eV Total energy + Delta-G solvation = -4045.025594 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.07389 -41.09963 -38.79817 -38.47433 -37.98520 -35.60541 -34.44779 -33.62784 -33.31046 -31.46657 -29.99296 -29.19076 -27.59621 -26.84440 -24.51068 -24.09319 -22.91057 -22.58938 -21.69122 -21.51836 -19.59573 -18.88496 -18.87008 -18.41661 -17.61809 -17.29587 -16.83372 -16.68975 -16.36912 -16.14018 -15.92520 -15.74886 -15.16179 -15.05238 -14.99013 -14.87905 -14.61604 -14.50444 -14.04827 -13.86958 -13.82762 -13.48377 -13.34847 -13.11076 -12.91518 -12.80420 -12.44235 -12.27612 -12.18149 -11.85747 -11.76934 -11.42698 -11.32687 -11.26555 -11.25462 -11.05353 -10.70842 -10.62032 -9.81481 -9.10055 -8.96795 -8.25422 -6.28374 -0.03358 0.16872 1.33464 1.36500 1.47616 1.49979 1.87463 2.33758 2.34681 2.48861 2.87767 3.07567 3.49770 3.69084 3.71964 3.78704 3.91842 4.12311 4.19673 4.23014 4.26248 4.31395 4.32789 4.36905 4.39507 4.41323 4.43418 4.60518 4.66891 4.74885 4.80483 4.83082 4.93704 5.03288 5.07447 5.09197 5.16026 5.21944 5.25164 5.30572 5.42097 5.67624 5.71066 6.01557 6.14267 6.29421 6.49800 6.55911 6.77874 6.87109 7.10623 7.36415 8.91640 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.023896 B = 0.002318 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.463511 B =12077.602135 C =12877.565614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.135 4.135 3 C 0.199 3.801 4 H 0.010 0.990 5 C -0.503 4.503 6 H 0.031 0.969 7 C 0.009 3.991 8 N -0.950 5.950 9 Si 0.949 3.051 10 H -0.271 1.271 11 H -0.239 1.239 12 H -0.300 1.300 13 N -0.679 5.679 14 C 0.053 3.947 15 C 0.517 3.483 16 O -0.541 6.541 17 N -0.658 5.658 18 C 0.154 3.846 19 C -0.132 4.132 20 C -0.089 4.089 21 C 0.032 3.968 22 C 0.072 3.928 23 C -0.152 4.152 24 O -0.347 6.347 25 C 0.049 3.951 26 C -0.182 4.182 27 C 0.050 3.950 28 O -0.337 6.337 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.044 0.956 33 H 0.055 0.945 34 H 0.265 0.735 35 H 0.339 0.661 36 H 0.101 0.899 37 H 0.087 0.913 38 H 0.432 0.568 39 H 0.171 0.829 40 H 0.167 0.833 41 H 0.129 0.871 42 H 0.062 0.938 43 H 0.117 0.883 44 H 0.123 0.877 45 H 0.071 0.929 46 H 0.066 0.934 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.670 19.185 11.171 29.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.173 4.173 3 C 0.090 3.910 4 H 0.027 0.973 5 C -0.542 4.542 6 H 0.050 0.950 7 C -0.188 4.188 8 N -0.591 5.591 9 Si 0.776 3.224 10 H -0.198 1.198 11 H -0.163 1.163 12 H -0.228 1.228 13 N -0.313 5.313 14 C -0.079 4.079 15 C 0.305 3.695 16 O -0.417 6.417 17 N -0.305 5.305 18 C 0.059 3.941 19 C -0.152 4.152 20 C -0.108 4.108 21 C -0.013 4.013 22 C 0.027 3.973 23 C -0.173 4.173 24 O -0.265 6.265 25 C -0.025 4.025 26 C -0.220 4.220 27 C -0.024 4.024 28 O -0.255 6.255 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.159 0.841 36 H 0.119 0.881 37 H 0.104 0.896 38 H 0.271 0.729 39 H 0.188 0.812 40 H 0.185 0.815 41 H 0.146 0.854 42 H 0.081 0.919 43 H 0.135 0.865 44 H 0.141 0.859 45 H 0.090 0.910 46 H 0.084 0.916 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -18.913 18.422 12.218 29.092 hybrid contribution -0.475 -0.447 -1.465 1.603 sum -19.388 17.975 10.753 28.542 Atomic orbital electron populations 1.21846 0.94367 1.02591 1.01862 1.21982 0.96386 0.98232 1.00732 1.19414 0.93774 0.91239 0.86597 0.97273 1.21254 0.91515 1.36961 1.04429 0.95038 1.25826 0.95931 0.96495 1.00528 1.70055 1.11159 1.47394 1.30500 0.85851 0.79786 0.79432 0.77335 1.19751 1.16293 1.22775 1.59912 1.35185 1.03633 1.32581 1.21729 1.04146 0.89931 0.92101 1.21212 0.74968 0.81879 0.91426 1.90682 1.47797 1.62844 1.40336 1.43454 1.67513 1.06748 1.12831 1.17794 0.95200 0.93790 0.87346 1.21106 1.01610 0.94266 0.98216 1.21146 0.97588 1.00910 0.91109 1.19287 1.01822 0.91705 0.88443 1.19096 0.96281 0.91854 0.90045 1.21163 1.00860 1.02125 0.93106 1.86339 1.26448 1.53108 1.60564 1.22937 0.81854 0.98241 0.99481 1.22467 1.03323 0.96174 1.00018 1.22927 0.79215 0.97144 1.03099 1.86340 1.28653 1.78723 1.31745 0.92454 0.91362 0.91887 0.93813 0.92586 0.92646 0.84097 0.88070 0.89578 0.72862 0.81169 0.81548 0.85357 0.91921 0.86473 0.85876 0.91018 0.91596 0.85505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.57 9.82 71.98 0.71 -3.86 16 2 C -0.14 -5.54 5.04 30.59 0.15 -5.38 16 3 C 0.20 8.85 1.62 44.17 0.07 8.93 16 4 H 0.01 0.42 6.99 -2.39 -0.02 0.40 16 5 C -0.50 -28.33 8.88 25.60 0.23 -28.10 16 6 H 0.03 2.03 8.06 -2.91 -0.02 2.01 16 7 C 0.01 0.52 5.45 84.66 0.46 0.98 16 8 N -0.95 -59.20 13.96 21.45 0.30 -58.90 16 9 Si 0.95 43.60 24.41 68.60 1.67 45.28 16 10 H -0.27 -12.08 6.82 99.48 0.68 -11.41 16 11 H -0.24 -9.82 6.53 99.48 0.65 -9.17 16 12 H -0.30 -13.80 7.11 99.48 0.71 -13.10 16 13 N -0.68 -27.46 5.82 -499.48 -2.91 -30.37 16 14 C 0.05 1.75 5.96 85.56 0.51 2.26 16 15 C 0.52 16.50 7.68 87.66 0.67 17.17 16 16 O -0.54 -21.84 13.58 -3.07 -0.04 -21.88 16 17 N -0.66 -15.35 5.37 -303.36 -1.63 -16.98 16 18 C 0.15 3.81 6.40 38.13 0.24 4.06 16 19 C -0.13 -2.40 9.94 22.42 0.22 -2.17 16 20 C -0.09 -1.65 10.00 22.33 0.22 -1.43 16 21 C 0.03 0.77 5.73 22.45 0.13 0.90 16 22 C 0.07 2.03 5.73 22.44 0.13 2.16 16 23 C -0.15 -4.54 8.65 22.47 0.19 -4.35 16 24 O -0.35 -9.86 10.16 -84.25 -0.86 -10.71 16 25 C 0.05 0.86 6.51 71.67 0.47 1.32 16 26 C -0.18 -2.32 5.93 29.98 0.18 -2.14 16 27 C 0.05 0.68 6.51 71.67 0.47 1.15 16 28 O -0.34 -7.54 10.16 -85.17 -0.87 -8.41 16 29 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.06 1.78 6.30 -2.39 -0.02 1.76 16 32 H 0.04 1.88 3.22 -2.39 -0.01 1.87 16 33 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.26 15.45 8.31 -92.70 -0.77 14.68 16 35 H 0.34 12.44 6.37 -89.69 -0.57 11.87 16 36 H 0.10 3.60 7.72 -2.39 -0.02 3.58 16 37 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.43 6.53 8.79 -92.71 -0.82 5.72 16 39 H 0.17 1.87 8.06 -2.91 -0.02 1.85 16 40 H 0.17 2.08 8.06 -2.91 -0.02 2.06 16 41 H 0.13 4.50 5.94 -2.91 -0.02 4.49 16 42 H 0.06 0.99 7.93 -2.38 -0.02 0.97 16 43 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.07 0.76 7.93 -2.39 -0.02 0.74 16 47 H 0.13 1.03 8.14 -2.38 -0.02 1.01 16 Total: -1.00 -80.06 372.56 0.27 -79.79 By element: Atomic # 1 Polarization: 31.15 SS G_CDS: -0.46 Total: 30.69 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: 5.06 Total: -8.52 kcal Atomic # 7 Polarization: -102.00 SS G_CDS: -4.24 Total: -106.24 kcal Atomic # 8 Polarization: -39.23 SS G_CDS: -1.76 Total: -41.00 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 1.67 Total: 45.28 kcal Total: -80.06 0.27 -79.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572493839.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.407 kcal (2) G-P(sol) polarization free energy of solvation -80.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds