Wall clock time and date at job start Tue Mar 31 2020 17:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46921 * 2 1 4 4 H 1.09003 * 109.47314 * 55.70994 * 3 2 1 5 5 C 1.50707 * 109.46826 * 175.70579 * 3 2 1 6 6 H 1.07994 * 119.99814 * 119.99809 * 5 3 2 7 7 C 1.37875 * 120.00142 * 300.00072 * 5 3 2 8 8 N 1.31516 * 120.00043 * 179.97438 * 7 5 3 9 9 Si 1.86806 * 120.00080 * 0.02562 * 7 5 3 10 10 H 1.48497 * 109.47232 * 89.99590 * 9 7 5 11 11 H 1.48498 * 109.46793 * 210.00029 * 9 7 5 12 12 H 1.48507 * 109.46939 * 329.99591 * 9 7 5 13 13 N 1.46895 * 109.47561 * 295.70472 * 3 2 1 14 14 C 1.46897 * 111.00188 * 153.18456 * 13 3 2 15 15 C 1.50705 * 109.47327 * 185.31423 * 14 13 3 16 16 O 1.21286 * 119.99491 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99872 * 180.02562 * 15 14 13 18 18 C 1.40101 * 119.99680 * 175.07170 * 17 15 14 19 19 C 1.38839 * 119.96584 * 146.55248 * 18 17 15 20 20 C 1.38285 * 120.14521 * 179.97438 * 19 18 17 21 21 C 1.38477 * 119.80364 * 0.02902 * 20 19 18 22 22 C 1.38763 * 120.17708 * 359.97438 * 21 20 19 23 23 C 1.38413 * 120.14234 * 359.74249 * 22 21 20 24 24 O 1.36471 * 119.60623 * 179.97438 * 22 21 20 25 25 C 1.42893 * 115.93287 * 68.31109 * 24 22 21 26 26 C 1.52063 * 110.77104 * 275.55656 * 25 24 22 27 27 C 1.52065 * 112.37247 * 64.80666 * 26 25 24 28 28 O 1.36556 * 120.23683 * 179.97438 * 21 20 19 29 29 H 1.09004 * 109.46988 * 305.07150 * 1 2 3 30 30 H 1.09001 * 109.47366 * 65.06569 * 1 2 3 31 31 H 1.08996 * 109.47556 * 185.06909 * 1 2 3 32 32 H 1.08998 * 109.46694 * 240.00346 * 2 1 3 33 33 H 1.08996 * 109.46823 * 120.00129 * 2 1 3 34 34 H 0.97000 * 119.99543 * 179.97438 * 8 7 5 35 35 H 1.00896 * 111.00609 * 277.14768 * 13 3 2 36 36 H 1.08996 * 109.47349 * 305.31758 * 14 13 3 37 37 H 1.09004 * 109.46619 * 65.31908 * 14 13 3 38 38 H 0.97000 * 120.00132 * 355.06363 * 17 15 14 39 39 H 1.07997 * 119.93392 * 359.97438 * 19 18 17 40 40 H 1.07996 * 120.09663 * 180.02562 * 20 19 18 41 41 H 1.08003 * 120.16505 * 180.30459 * 23 22 21 42 42 H 1.09001 * 109.21951 * 35.88694 * 25 24 22 43 43 H 1.09004 * 109.22404 * 155.21993 * 25 24 22 44 44 H 1.09000 * 108.90353 * 185.55301 * 26 25 24 45 45 H 1.08999 * 108.90066 * 304.15596 * 26 25 24 46 46 H 1.09003 * 109.21383 * 55.52492 * 27 26 25 47 47 H 1.08999 * 109.21764 * 174.86046 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6152 1.9781 0.8491 5 6 3.5433 1.4438 0.1064 6 1 4.1394 1.8915 -0.6749 7 6 4.1574 0.8734 1.2011 8 7 5.4693 0.8741 1.2937 9 14 3.1262 0.0982 2.5521 10 1 2.9017 -1.3366 2.2421 11 1 3.8386 0.2188 3.8495 12 1 1.8183 0.7964 2.6389 13 7 1.6368 2.1045 -1.2479 14 6 1.5183 3.5564 -1.0591 15 6 0.9792 4.1844 -2.3185 16 8 0.7189 3.4906 -3.2787 17 7 0.7863 5.5170 -2.3778 18 6 0.3839 6.1137 -3.5799 19 6 -0.4497 7.2237 -3.5580 20 6 -0.8487 7.8159 -4.7422 21 6 -0.4149 7.2982 -5.9511 22 6 0.4182 6.1888 -5.9760 23 6 0.8239 5.5976 -4.7920 24 8 0.8383 5.6878 -7.1739 25 6 1.7406 6.5123 -7.9141 26 6 0.9801 7.5395 -8.7380 27 6 0.2236 8.5326 -7.8698 28 8 -0.8040 7.8757 -7.1258 29 1 -0.3633 0.5905 0.8411 30 1 -0.3634 0.4332 -0.9319 31 1 -0.3634 -1.0236 0.0908 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 5.9013 0.4731 2.0641 35 1 2.2787 1.8882 -1.9957 36 1 0.8390 3.7610 -0.2316 37 1 2.4996 3.9750 -0.8357 38 1 0.9260 6.0629 -1.5883 39 1 -0.7873 7.6257 -2.6142 40 1 -1.4968 8.6796 -4.7243 41 1 1.4763 4.7371 -4.8108 42 1 2.4051 7.0288 -7.2215 43 1 2.3344 5.8864 -8.5804 44 1 1.6873 8.0843 -9.3634 45 1 0.2686 7.0203 -9.3802 46 1 0.9195 9.0073 -7.1781 47 1 -0.2257 9.2955 -8.5056 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572493840.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:50 Heat of formation + Delta-G solvation = -72.742866 kcal Electronic energy + Delta-G solvation = -28601.012004 eV Core-core repulsion = 24556.829814 eV Total energy + Delta-G solvation = -4044.182190 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.14846 -39.95987 -37.69851 -37.61413 -36.26795 -34.54722 -32.84884 -32.47786 -31.72985 -30.55670 -28.92328 -27.55185 -26.72565 -25.22712 -23.41210 -22.48686 -21.91701 -21.89801 -20.36403 -19.95035 -18.72729 -17.96053 -17.35240 -17.12720 -16.52629 -16.15218 -15.60771 -15.53112 -15.21471 -15.02137 -14.51828 -14.33866 -14.19620 -14.04635 -13.80878 -13.71926 -13.17857 -13.10824 -12.89805 -12.52218 -12.46436 -12.26514 -12.03542 -11.66239 -11.57057 -11.51552 -11.14214 -11.04756 -10.68479 -10.67698 -10.45692 -10.36291 -10.05629 -9.85000 -9.57751 -9.49563 -9.27206 -8.89113 -8.64288 -8.08498 -7.46953 -6.19466 -4.21681 0.86656 1.06632 2.70037 2.95090 3.20515 3.22592 3.25842 3.32449 3.34338 3.77085 4.31162 4.31685 4.39964 4.68727 4.77674 4.86225 4.90468 4.96819 4.97925 5.04389 5.11723 5.20100 5.22755 5.36793 5.39846 5.62231 5.66924 5.69811 5.71918 5.95137 6.05101 6.05728 6.06360 6.12196 6.21120 6.27604 6.64283 6.64719 6.71466 6.92745 6.94775 7.04088 7.21465 7.35441 7.40764 7.47326 7.88656 8.22333 8.31693 8.39608 8.81894 9.43350 10.93181 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.022635 B = 0.002273 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.720728 B =12312.978185 C =12583.631597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 C 0.185 3.815 4 H 0.033 0.967 5 C -0.551 4.551 6 H 0.073 0.927 7 C 0.074 3.926 8 N -0.896 5.896 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.298 1.298 12 H -0.264 1.264 13 N -0.664 5.664 14 C 0.050 3.950 15 C 0.512 3.488 16 O -0.500 6.500 17 N -0.682 5.682 18 C 0.170 3.830 19 C -0.144 4.144 20 C -0.096 4.096 21 C 0.040 3.960 22 C 0.088 3.912 23 C -0.120 4.120 24 O -0.316 6.316 25 C 0.060 3.940 26 C -0.187 4.187 27 C 0.059 3.941 28 O -0.319 6.319 29 H 0.039 0.961 30 H 0.062 0.938 31 H 0.033 0.967 32 H 0.059 0.941 33 H 0.045 0.955 34 H 0.265 0.735 35 H 0.345 0.655 36 H 0.095 0.905 37 H 0.069 0.931 38 H 0.413 0.587 39 H 0.135 0.865 40 H 0.137 0.863 41 H 0.149 0.851 42 H 0.057 0.943 43 H 0.104 0.896 44 H 0.089 0.911 45 H 0.083 0.917 46 H 0.056 0.944 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.712 18.325 -13.321 24.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.153 4.153 3 C 0.077 3.923 4 H 0.051 0.949 5 C -0.590 4.590 6 H 0.091 0.909 7 C -0.129 4.129 8 N -0.533 5.533 9 Si 0.721 3.279 10 H -0.204 1.204 11 H -0.226 1.226 12 H -0.189 1.189 13 N -0.295 5.295 14 C -0.083 4.083 15 C 0.300 3.700 16 O -0.372 6.372 17 N -0.329 5.329 18 C 0.075 3.925 19 C -0.164 4.164 20 C -0.115 4.115 21 C -0.005 4.005 22 C 0.043 3.957 23 C -0.141 4.141 24 O -0.232 6.232 25 C -0.015 4.015 26 C -0.225 4.225 27 C -0.016 4.016 28 O -0.235 6.235 29 H 0.058 0.942 30 H 0.082 0.918 31 H 0.052 0.948 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.163 0.837 36 H 0.113 0.887 37 H 0.087 0.913 38 H 0.249 0.751 39 H 0.153 0.847 40 H 0.155 0.845 41 H 0.166 0.834 42 H 0.076 0.924 43 H 0.122 0.878 44 H 0.107 0.893 45 H 0.102 0.898 46 H 0.075 0.925 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.594 17.390 -13.930 24.672 hybrid contribution 0.946 0.219 1.256 1.588 sum -9.647 17.609 -12.675 23.744 Atomic orbital electron populations 1.21727 0.97437 0.99240 1.01629 1.21801 0.93966 0.99021 1.00512 1.19623 0.94295 0.90852 0.87570 0.94886 1.21730 0.90310 1.39413 1.07512 0.90889 1.25005 0.94773 0.95147 0.97971 1.69915 1.08512 1.44678 1.30203 0.86803 0.80386 0.80085 0.80652 1.20355 1.22601 1.18907 1.60477 1.55736 1.03940 1.09362 1.21685 1.00865 0.92482 0.93294 1.21435 0.76791 0.80641 0.91151 1.90716 1.47363 1.61099 1.38004 1.43778 1.68967 1.08737 1.11412 1.17579 0.95040 0.93847 0.86079 1.20805 0.98911 0.98053 0.98669 1.20796 1.00643 1.00100 0.89920 1.19077 1.00508 0.94456 0.86448 1.18913 0.96771 0.94014 0.85965 1.21113 1.01322 1.02411 0.89261 1.86404 1.63321 1.44355 1.29150 1.22626 0.90615 0.93572 0.94723 1.22478 1.01166 0.98623 1.00226 1.22611 0.90607 0.93942 0.94416 1.86384 1.34241 1.71312 1.31593 0.94220 0.91846 0.94825 0.92184 0.93666 0.92536 0.83676 0.88674 0.91343 0.75128 0.84690 0.84506 0.83371 0.92423 0.87801 0.89280 0.89823 0.92539 0.88063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 9.73 37.16 0.36 -2.31 16 2 C -0.11 -2.49 5.11 -26.73 -0.14 -2.63 16 3 C 0.19 4.16 1.58 -68.86 -0.11 4.05 16 4 H 0.03 0.75 6.74 -51.93 -0.35 0.40 16 5 C -0.55 -14.61 9.09 -34.44 -0.31 -14.92 16 6 H 0.07 2.10 7.96 -52.49 -0.42 1.68 16 7 C 0.07 2.06 5.45 -17.82 -0.10 1.96 16 8 N -0.90 -26.53 13.96 55.43 0.77 -25.75 16 9 Si 0.89 21.34 24.41 -169.99 -4.15 17.19 16 10 H -0.28 -6.56 6.83 56.52 0.39 -6.17 16 11 H -0.30 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.26 -6.02 6.53 56.52 0.37 -5.65 16 13 N -0.66 -13.21 5.30 -109.22 -0.58 -13.79 16 14 C 0.05 0.81 6.00 -4.98 -0.03 0.78 16 15 C 0.51 7.94 7.62 -10.98 -0.08 7.86 16 16 O -0.50 -9.60 14.02 5.55 0.08 -9.52 16 17 N -0.68 -8.03 5.35 -9.82 -0.05 -8.08 16 18 C 0.17 2.12 6.28 -83.61 -0.52 1.59 16 19 C -0.14 -1.43 9.95 -39.34 -0.39 -1.82 16 20 C -0.10 -0.97 10.00 -39.48 -0.39 -1.37 16 21 C 0.04 0.49 5.73 -39.30 -0.23 0.26 16 22 C 0.09 1.22 5.73 -39.32 -0.23 0.99 16 23 C -0.12 -1.74 8.60 -39.27 -0.34 -2.08 16 24 O -0.32 -4.35 10.16 -36.72 -0.37 -4.72 16 25 C 0.06 0.55 6.51 36.68 0.24 0.79 16 26 C -0.19 -1.36 5.92 -27.68 -0.16 -1.53 16 27 C 0.06 0.46 6.51 36.68 0.24 0.70 16 28 O -0.32 -3.72 10.16 -36.99 -0.38 -4.10 16 29 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 1.18 7.88 -51.93 -0.41 0.77 16 31 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.05 1.03 3.22 -51.93 -0.17 0.87 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.35 7.26 8.27 -39.29 -0.33 6.93 16 36 H 0.10 1.38 7.92 -51.93 -0.41 0.97 16 37 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.41 3.39 8.82 -40.82 -0.36 3.03 16 39 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 40 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 41 H 0.15 2.43 6.44 -52.48 -0.34 2.09 16 42 H 0.06 0.49 7.93 -51.93 -0.41 0.08 16 43 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.06 0.40 7.93 -51.93 -0.41 -0.02 16 47 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 376.31 15.07 5.67 5.67 Total: -1.00 -33.41 376.31 -8.21 -41.62 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -7.01 Total: 9.15 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: -2.19 Total: -7.67 kcal Atomic # 7 Polarization: -47.77 SS G_CDS: 0.14 Total: -47.63 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: -0.67 Total: -18.34 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.15 Total: 17.19 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.41 -8.21 -41.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572493840.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.119 kcal (2) G-P(sol) polarization free energy of solvation -33.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds