Wall clock time and date at job start Tue Mar 31 2020 17:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46921 * 2 1 4 4 H 1.09003 * 109.47314 * 55.70994 * 3 2 1 5 5 C 1.50707 * 109.46826 * 175.70579 * 3 2 1 6 6 H 1.07994 * 119.99814 * 119.99809 * 5 3 2 7 7 C 1.37875 * 120.00142 * 300.00072 * 5 3 2 8 8 N 1.31516 * 120.00043 * 179.97438 * 7 5 3 9 9 Si 1.86806 * 120.00080 * 0.02562 * 7 5 3 10 10 H 1.48497 * 109.47232 * 89.99590 * 9 7 5 11 11 H 1.48498 * 109.46793 * 210.00029 * 9 7 5 12 12 H 1.48507 * 109.46939 * 329.99591 * 9 7 5 13 13 N 1.46895 * 109.47561 * 295.70472 * 3 2 1 14 14 C 1.46897 * 111.00188 * 153.18456 * 13 3 2 15 15 C 1.50705 * 109.47327 * 185.31423 * 14 13 3 16 16 O 1.21286 * 119.99491 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99872 * 180.02562 * 15 14 13 18 18 C 1.40101 * 119.99680 * 175.07170 * 17 15 14 19 19 C 1.38839 * 119.96584 * 146.55248 * 18 17 15 20 20 C 1.38285 * 120.14521 * 179.97438 * 19 18 17 21 21 C 1.38477 * 119.80364 * 0.02902 * 20 19 18 22 22 C 1.38763 * 120.17708 * 359.97438 * 21 20 19 23 23 C 1.38413 * 120.14234 * 359.74249 * 22 21 20 24 24 O 1.36471 * 119.60623 * 179.97438 * 22 21 20 25 25 C 1.42893 * 115.93287 * 68.31109 * 24 22 21 26 26 C 1.52063 * 110.77104 * 275.55656 * 25 24 22 27 27 C 1.52065 * 112.37247 * 64.80666 * 26 25 24 28 28 O 1.36556 * 120.23683 * 179.97438 * 21 20 19 29 29 H 1.09004 * 109.46988 * 305.07150 * 1 2 3 30 30 H 1.09001 * 109.47366 * 65.06569 * 1 2 3 31 31 H 1.08996 * 109.47556 * 185.06909 * 1 2 3 32 32 H 1.08998 * 109.46694 * 240.00346 * 2 1 3 33 33 H 1.08996 * 109.46823 * 120.00129 * 2 1 3 34 34 H 0.97000 * 119.99543 * 179.97438 * 8 7 5 35 35 H 1.00896 * 111.00609 * 277.14768 * 13 3 2 36 36 H 1.08996 * 109.47349 * 305.31758 * 14 13 3 37 37 H 1.09004 * 109.46619 * 65.31908 * 14 13 3 38 38 H 0.97000 * 120.00132 * 355.06363 * 17 15 14 39 39 H 1.07997 * 119.93392 * 359.97438 * 19 18 17 40 40 H 1.07996 * 120.09663 * 180.02562 * 20 19 18 41 41 H 1.08003 * 120.16505 * 180.30459 * 23 22 21 42 42 H 1.09001 * 109.21951 * 35.88694 * 25 24 22 43 43 H 1.09004 * 109.22404 * 155.21993 * 25 24 22 44 44 H 1.09000 * 108.90353 * 185.55301 * 26 25 24 45 45 H 1.08999 * 108.90066 * 304.15596 * 26 25 24 46 46 H 1.09003 * 109.21383 * 55.52492 * 27 26 25 47 47 H 1.08999 * 109.21764 * 174.86046 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6152 1.9781 0.8491 5 6 3.5433 1.4438 0.1064 6 1 4.1394 1.8915 -0.6749 7 6 4.1574 0.8734 1.2011 8 7 5.4693 0.8741 1.2937 9 14 3.1262 0.0982 2.5521 10 1 2.9017 -1.3366 2.2421 11 1 3.8386 0.2188 3.8495 12 1 1.8183 0.7964 2.6389 13 7 1.6368 2.1045 -1.2479 14 6 1.5183 3.5564 -1.0591 15 6 0.9792 4.1844 -2.3185 16 8 0.7189 3.4906 -3.2787 17 7 0.7863 5.5170 -2.3778 18 6 0.3839 6.1137 -3.5799 19 6 -0.4497 7.2237 -3.5580 20 6 -0.8487 7.8159 -4.7422 21 6 -0.4149 7.2982 -5.9511 22 6 0.4182 6.1888 -5.9760 23 6 0.8239 5.5976 -4.7920 24 8 0.8383 5.6878 -7.1739 25 6 1.7406 6.5123 -7.9141 26 6 0.9801 7.5395 -8.7380 27 6 0.2236 8.5326 -7.8698 28 8 -0.8040 7.8757 -7.1258 29 1 -0.3633 0.5905 0.8411 30 1 -0.3634 0.4332 -0.9319 31 1 -0.3634 -1.0236 0.0908 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 5.9013 0.4731 2.0641 35 1 2.2787 1.8882 -1.9957 36 1 0.8390 3.7610 -0.2316 37 1 2.4996 3.9750 -0.8357 38 1 0.9260 6.0629 -1.5883 39 1 -0.7873 7.6257 -2.6142 40 1 -1.4968 8.6796 -4.7243 41 1 1.4763 4.7371 -4.8108 42 1 2.4051 7.0288 -7.2215 43 1 2.3344 5.8864 -8.5804 44 1 1.6873 8.0843 -9.3634 45 1 0.2686 7.0203 -9.3802 46 1 0.9195 9.0073 -7.1781 47 1 -0.2257 9.2955 -8.5056 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572493840.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:49 Heat of formation + Delta-G solvation = -97.405724 kcal Electronic energy + Delta-G solvation = -28602.081466 eV Core-core repulsion = 24556.829814 eV Total energy + Delta-G solvation = -4045.251652 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.05842 -41.06059 -38.75531 -38.48292 -37.87736 -35.58168 -34.43148 -33.62648 -33.33770 -31.48712 -30.04437 -29.08412 -27.55129 -26.69102 -24.46581 -24.06423 -22.90700 -22.59988 -21.71098 -21.49731 -19.61075 -19.20719 -18.77159 -18.33747 -17.64634 -17.12590 -17.04687 -16.49037 -16.38532 -16.18812 -15.88358 -15.43891 -15.15824 -15.04737 -15.03860 -14.89369 -14.51440 -14.44380 -14.10454 -13.90575 -13.76980 -13.39558 -13.24723 -13.14053 -12.98414 -12.78426 -12.41917 -12.29010 -12.16634 -11.85545 -11.64094 -11.41870 -11.31800 -11.28745 -11.19939 -11.07742 -10.77146 -10.64547 -9.82895 -9.15181 -9.00776 -8.32949 -6.39106 -0.04045 0.15614 1.34133 1.37126 1.48347 1.53400 1.90048 2.30982 2.32310 2.48054 2.87738 3.02949 3.55189 3.70526 3.70935 3.80806 3.89644 4.12052 4.18816 4.23115 4.30629 4.32509 4.35955 4.40054 4.45805 4.50334 4.57582 4.64006 4.70114 4.74373 4.79481 4.92721 4.93344 5.06633 5.13677 5.16761 5.25803 5.27360 5.28996 5.44093 5.46867 5.62526 5.68113 6.01647 6.12825 6.32747 6.38425 6.54426 6.57805 6.72702 7.14090 7.30109 8.83100 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.022635 B = 0.002273 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.720728 B =12312.978185 C =12583.631597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.118 4.118 3 C 0.193 3.807 4 H 0.042 0.958 5 C -0.548 4.548 6 H 0.033 0.967 7 C 0.017 3.983 8 N -0.946 5.946 9 Si 0.950 3.050 10 H -0.272 1.272 11 H -0.300 1.300 12 H -0.238 1.238 13 N -0.664 5.664 14 C 0.050 3.950 15 C 0.517 3.483 16 O -0.543 6.543 17 N -0.661 5.661 18 C 0.153 3.847 19 C -0.125 4.125 20 C -0.089 4.089 21 C 0.036 3.964 22 C 0.069 3.931 23 C -0.145 4.145 24 O -0.348 6.348 25 C 0.048 3.952 26 C -0.182 4.182 27 C 0.051 3.949 28 O -0.336 6.336 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.047 0.953 33 H 0.037 0.963 34 H 0.266 0.734 35 H 0.334 0.666 36 H 0.122 0.878 37 H 0.066 0.934 38 H 0.432 0.568 39 H 0.174 0.826 40 H 0.169 0.831 41 H 0.115 0.885 42 H 0.061 0.939 43 H 0.116 0.884 44 H 0.122 0.878 45 H 0.072 0.928 46 H 0.065 0.935 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.398 20.540 -12.515 27.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.157 4.157 3 C 0.083 3.917 4 H 0.060 0.940 5 C -0.587 4.587 6 H 0.052 0.948 7 C -0.181 4.181 8 N -0.586 5.586 9 Si 0.777 3.223 10 H -0.198 1.198 11 H -0.228 1.228 12 H -0.161 1.161 13 N -0.294 5.294 14 C -0.083 4.083 15 C 0.306 3.694 16 O -0.419 6.419 17 N -0.309 5.309 18 C 0.059 3.941 19 C -0.145 4.145 20 C -0.108 4.108 21 C -0.009 4.009 22 C 0.025 3.975 23 C -0.166 4.166 24 O -0.265 6.265 25 C -0.026 4.026 26 C -0.219 4.219 27 C -0.023 4.023 28 O -0.253 6.253 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.150 0.850 36 H 0.140 0.860 37 H 0.084 0.916 38 H 0.271 0.729 39 H 0.192 0.808 40 H 0.187 0.813 41 H 0.133 0.867 42 H 0.079 0.921 43 H 0.134 0.866 44 H 0.141 0.859 45 H 0.091 0.909 46 H 0.084 0.916 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -13.302 19.671 -13.126 27.132 hybrid contribution 1.852 -0.348 0.824 2.057 sum -11.450 19.322 -12.303 25.609 Atomic orbital electron populations 1.21624 0.94613 1.00841 1.01985 1.21774 0.96462 0.97855 0.99562 1.19499 0.91274 0.92051 0.88855 0.94015 1.22030 0.92609 1.38005 1.06044 0.94838 1.25856 0.95722 0.95887 1.00635 1.70064 1.10570 1.46597 1.31331 0.85827 0.79733 0.79509 0.77223 1.19828 1.22828 1.16147 1.60468 1.54760 1.06310 1.07835 1.21770 1.01477 0.90371 0.94683 1.21208 0.76387 0.81702 0.90115 1.90714 1.49527 1.62466 1.39163 1.43450 1.67790 1.07549 1.12159 1.17732 0.96250 0.94929 0.85235 1.21160 0.96867 0.96134 1.00324 1.21184 1.00097 1.00558 0.88960 1.19288 0.99904 0.94055 0.87642 1.19093 0.97844 0.94891 0.85695 1.21002 1.02398 1.02298 0.90939 1.86335 1.64273 1.46323 1.29596 1.22934 0.90593 0.94172 0.94892 1.22462 1.01404 0.98173 0.99893 1.22928 0.90483 0.94255 0.94666 1.86342 1.35823 1.71479 1.31698 0.93086 0.92096 0.92783 0.93378 0.94477 0.92537 0.84958 0.86049 0.91583 0.72850 0.80842 0.81334 0.86657 0.92096 0.86641 0.85947 0.90889 0.91647 0.85348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.60 9.73 71.98 0.70 -3.90 16 2 C -0.12 -4.98 5.11 30.59 0.16 -4.82 16 3 C 0.19 8.50 1.58 44.17 0.07 8.57 16 4 H 0.04 1.80 6.74 -2.39 -0.02 1.78 16 5 C -0.55 -29.72 9.09 25.60 0.23 -29.49 16 6 H 0.03 2.03 7.96 -2.91 -0.02 2.01 16 7 C 0.02 0.98 5.45 84.65 0.46 1.44 16 8 N -0.95 -57.69 13.96 21.45 0.30 -57.39 16 9 Si 0.95 43.42 24.41 68.60 1.67 45.09 16 10 H -0.27 -12.15 6.83 99.48 0.68 -11.47 16 11 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 12 H -0.24 -9.80 6.53 99.48 0.65 -9.15 16 13 N -0.66 -26.53 5.30 -499.46 -2.65 -29.18 16 14 C 0.05 1.58 6.00 85.56 0.51 2.09 16 15 C 0.52 16.08 7.62 87.66 0.67 16.75 16 16 O -0.54 -21.67 14.02 -3.05 -0.04 -21.71 16 17 N -0.66 -14.83 5.35 -303.36 -1.62 -16.46 16 18 C 0.15 3.70 6.28 38.12 0.24 3.94 16 19 C -0.12 -2.11 9.95 22.42 0.22 -1.88 16 20 C -0.09 -1.56 10.00 22.34 0.22 -1.34 16 21 C 0.04 0.84 5.73 22.45 0.13 0.97 16 22 C 0.07 1.97 5.73 22.44 0.13 2.10 16 23 C -0.15 -4.41 8.60 22.47 0.19 -4.21 16 24 O -0.35 -10.11 10.16 -84.20 -0.86 -10.97 16 25 C 0.05 0.90 6.51 71.67 0.47 1.37 16 26 C -0.18 -2.41 5.92 29.98 0.18 -2.24 16 27 C 0.05 0.69 6.51 71.67 0.47 1.16 16 28 O -0.34 -7.37 10.16 -85.20 -0.87 -8.24 16 29 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 30 H 0.06 2.13 7.88 -2.39 -0.02 2.11 16 31 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.04 1.62 3.22 -2.39 -0.01 1.61 16 34 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 35 H 0.33 14.65 8.27 -89.70 -0.74 13.91 16 36 H 0.12 3.22 7.92 -2.39 -0.02 3.20 16 37 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 38 H 0.43 6.06 8.82 -92.71 -0.82 5.24 16 39 H 0.17 1.57 8.06 -2.91 -0.02 1.55 16 40 H 0.17 1.88 8.06 -2.91 -0.02 1.86 16 41 H 0.12 4.19 6.44 -2.91 -0.02 4.17 16 42 H 0.06 1.06 7.93 -2.39 -0.02 1.04 16 43 H 0.12 1.76 8.14 -2.38 -0.02 1.74 16 44 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.07 0.78 7.93 -2.39 -0.02 0.76 16 47 H 0.13 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -76.54 376.31 0.35 -76.19 By element: Atomic # 1 Polarization: 32.78 SS G_CDS: -0.64 Total: 32.14 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: 5.05 Total: -9.48 kcal Atomic # 7 Polarization: -99.05 SS G_CDS: -3.97 Total: -103.02 kcal Atomic # 8 Polarization: -39.16 SS G_CDS: -1.76 Total: -40.92 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 1.67 Total: 45.09 kcal Total: -76.54 0.35 -76.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572493840.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.215 kcal (2) G-P(sol) polarization free energy of solvation -76.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds