Wall clock time and date at job start Tue Mar 31 2020 18:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46997 * 2 1 4 4 N 1.46502 * 109.47205 * 119.99542 * 2 1 3 5 5 C 1.46500 * 119.99979 * 300.00261 * 4 2 1 6 6 C 1.50699 * 109.47099 * 269.99833 * 5 4 2 7 7 H 1.07994 * 119.99995 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99601 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99511 * 180.02562 * 8 6 5 10 10 Si 1.86795 * 120.00330 * 359.97438 * 8 6 5 11 11 H 1.48506 * 109.46971 * 90.00194 * 10 8 6 12 12 H 1.48497 * 109.47421 * 209.99874 * 10 8 6 13 13 H 1.48501 * 109.47165 * 330.00063 * 10 8 6 14 14 C 1.34775 * 120.00120 * 120.00182 * 4 2 1 15 15 O 1.21273 * 120.00387 * 180.02562 * 14 4 2 16 16 C 1.50700 * 119.99926 * 359.97438 * 14 4 2 17 17 N 1.46501 * 109.47512 * 179.97438 * 16 14 4 18 18 C 1.34770 * 120.00122 * 180.02562 * 17 16 14 19 19 O 1.21282 * 120.00256 * 0.02562 * 18 17 16 20 20 C 1.50703 * 120.00010 * 180.02562 * 18 17 16 21 21 O 1.42902 * 109.47357 * 180.02562 * 20 18 17 22 22 C 1.35898 * 116.99694 * 180.02562 * 21 20 18 23 23 C 1.38735 * 120.05254 * 179.97438 * 22 21 20 24 24 C 1.38144 * 119.94607 * 179.97438 * 23 22 21 25 25 C 1.38266 * 120.05233 * 0.02562 * 24 23 22 26 26 C 1.38269 * 120.11595 * 359.95530 * 25 24 23 27 27 C 1.38142 * 120.04935 * 0.04230 * 26 25 24 28 28 H 1.08995 * 109.47588 * 300.00144 * 1 2 3 29 29 H 1.09000 * 109.46905 * 60.00745 * 1 2 3 30 30 H 1.09005 * 109.46513 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47135 * 239.99572 * 2 1 3 32 32 H 1.08996 * 109.47044 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.47035 * 300.00037 * 3 2 1 34 34 H 1.08995 * 109.47069 * 59.99538 * 3 2 1 35 35 H 1.09004 * 109.47119 * 29.99931 * 5 4 2 36 36 H 1.08998 * 109.46933 * 149.99763 * 5 4 2 37 37 H 0.97003 * 119.99810 * 180.02562 * 9 8 6 38 38 H 1.09008 * 109.46893 * 60.00374 * 16 14 4 39 39 H 1.09001 * 109.47747 * 300.00344 * 16 14 4 40 40 H 0.96998 * 119.99602 * 0.02562 * 17 16 14 41 41 H 1.08999 * 109.46805 * 59.99992 * 20 18 17 42 42 H 1.08998 * 109.47364 * 300.00344 * 20 18 17 43 43 H 1.08002 * 120.02704 * 359.70561 * 23 22 21 44 44 H 1.08001 * 119.97447 * 179.97438 * 24 23 22 45 45 H 1.08000 * 119.94089 * 179.97438 * 25 24 23 46 46 H 1.07992 * 119.97577 * 180.02562 * 26 25 24 47 47 H 1.08005 * 120.02748 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 1.6644 -0.1899 2.5268 6 6 2.7031 0.8020 2.9830 7 1 3.5427 1.0365 2.3454 8 6 2.5815 1.4103 4.2144 9 7 3.4877 2.2763 4.6123 10 14 1.1290 1.0053 5.3168 11 1 1.4781 -0.1407 6.1945 12 1 0.7980 2.1866 6.1535 13 1 -0.0438 0.6478 4.4790 14 6 2.7933 -1.7863 1.0727 15 8 3.1972 -2.3582 2.0629 16 6 3.1569 -2.3016 -0.2960 17 7 3.9998 -3.4923 -0.1616 18 6 4.4491 -4.1275 -1.2620 19 8 4.1562 -3.7132 -2.3635 20 6 5.3157 -5.3527 -1.1237 21 8 5.6616 -5.8405 -2.4215 22 6 6.4454 -6.9494 -2.4751 23 6 6.8190 -7.4775 -3.7024 24 6 7.6163 -8.6045 -3.7542 25 6 8.0414 -9.2064 -2.5843 26 6 7.6707 -8.6818 -1.3598 27 6 6.8737 -7.5550 -1.3027 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3632 -1.0278 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 3.1299 1.4425 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 0.6904 0.2975 2.4843 36 1 1.6238 -1.0224 3.2292 37 1 3.4024 2.7040 5.4788 38 1 3.7017 -1.5309 -0.8414 39 1 2.2484 -2.5587 -0.8407 40 1 4.2344 -3.8234 0.7194 41 1 4.7708 -6.1235 -0.5787 42 1 6.2240 -5.0957 -0.5786 43 1 6.4833 -7.0105 -4.6165 44 1 7.9071 -9.0163 -4.7094 45 1 8.6643 -10.0876 -2.6269 46 1 8.0044 -9.1535 -0.4475 47 1 6.5840 -7.1457 -0.3461 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577653087.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:49 Heat of formation + Delta-G solvation = -75.417691 kcal Electronic energy + Delta-G solvation = -28000.861763 eV Core-core repulsion = 23956.563584 eV Total energy + Delta-G solvation = -4044.298180 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.67322 -39.91363 -39.02620 -37.46832 -36.31945 -34.46979 -32.80995 -31.46846 -31.15311 -30.66069 -29.66435 -28.30472 -26.84737 -26.28100 -23.09894 -22.61702 -22.22509 -21.48359 -20.64722 -18.70589 -18.65469 -17.54408 -16.97318 -16.67845 -16.65405 -16.27923 -15.85433 -15.75014 -15.44301 -14.87226 -14.63800 -14.42129 -14.06975 -13.76681 -13.68611 -13.66904 -13.19823 -13.10757 -12.86626 -12.76413 -12.54872 -12.23299 -11.93734 -11.91860 -11.75713 -11.50237 -11.40180 -11.22368 -11.04400 -10.94926 -10.60379 -10.43104 -10.17559 -10.05041 -9.56570 -9.33584 -9.28019 -9.26074 -8.63708 -8.53354 -7.88869 -6.13594 -4.11927 1.00857 1.12226 2.26827 2.39248 3.05949 3.23608 3.29221 3.31359 3.36609 3.47058 3.72264 4.34100 4.35806 4.52906 4.60263 4.68479 4.71741 4.74297 4.82602 5.05388 5.10325 5.14607 5.19325 5.30787 5.33738 5.41154 5.45673 5.53371 5.67766 5.88914 5.96730 6.00864 6.07538 6.10782 6.20897 6.22842 6.26052 6.41519 6.45473 6.66536 6.85708 6.93562 7.03065 7.18081 7.35788 7.54346 7.96985 8.10081 8.39201 8.69031 8.90598 9.46084 10.99339 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019270 B = 0.002109 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.663716 B =13273.595931 C =14160.856582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.129 3.871 3 C -0.157 4.157 4 N -0.580 5.580 5 C 0.215 3.785 6 C -0.524 4.524 7 H 0.077 0.923 8 C 0.072 3.928 9 N -0.895 5.895 10 Si 0.873 3.127 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.503 3.497 15 O -0.540 6.540 16 C 0.101 3.899 17 N -0.709 5.709 18 C 0.518 3.482 19 O -0.522 6.522 20 C 0.043 3.957 21 O -0.289 6.289 22 C 0.130 3.870 23 C -0.149 4.149 24 C -0.081 4.081 25 C -0.161 4.161 26 C -0.080 4.080 27 C -0.211 4.211 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.080 0.920 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.082 0.918 35 H 0.034 0.966 36 H 0.036 0.964 37 H 0.264 0.736 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.414 0.586 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.132 0.868 44 H 0.129 0.871 45 H 0.123 0.877 46 H 0.125 0.875 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.824 -17.974 -14.197 23.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.024 3.976 3 C -0.215 4.215 4 N -0.311 5.311 5 C 0.095 3.905 6 C -0.562 4.562 7 H 0.095 0.905 8 C -0.130 4.130 9 N -0.534 5.534 10 Si 0.701 3.299 11 H -0.200 1.200 12 H -0.211 1.211 13 H -0.191 1.191 14 C 0.289 3.711 15 O -0.418 6.418 16 C -0.026 4.026 17 N -0.366 5.366 18 C 0.302 3.698 19 O -0.397 6.397 20 C -0.036 4.036 21 O -0.201 6.201 22 C 0.085 3.915 23 C -0.168 4.168 24 C -0.099 4.099 25 C -0.179 4.179 26 C -0.098 4.098 27 C -0.230 4.230 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.101 0.899 35 H 0.052 0.948 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.116 0.884 39 H 0.113 0.887 40 H 0.252 0.748 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.150 0.850 44 H 0.147 0.853 45 H 0.141 0.859 46 H 0.143 0.857 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.759 -17.693 -14.454 23.013 hybrid contribution -0.506 -0.167 1.429 1.525 sum 2.253 -17.860 -13.025 22.220 Atomic orbital electron populations 1.22169 0.95284 1.01924 1.02695 1.21143 0.94334 0.94734 0.87348 1.22131 1.01837 0.94979 1.02530 1.47988 1.48666 1.25914 1.08502 1.19688 0.96576 0.95262 0.79006 1.21295 1.09284 1.22618 1.03051 0.90476 1.24852 0.96058 0.94746 0.97383 1.69889 1.34553 1.28189 1.20758 0.86898 0.83391 0.78270 0.81391 1.20002 1.21108 1.19121 1.20131 0.79497 0.81443 0.90039 1.90658 1.53623 1.58391 1.39154 1.21201 0.96279 0.88398 0.96691 1.45532 1.52155 1.29144 1.09783 1.19897 0.80791 0.84426 0.84664 1.90751 1.57154 1.66179 1.25621 1.22440 1.00102 0.95788 0.85285 1.86150 1.64644 1.40797 1.28540 1.19094 0.91335 0.86611 0.94487 1.20486 1.02094 0.98226 0.95995 1.20987 0.95914 0.94321 0.98692 1.21090 1.02886 1.01480 0.92468 1.20972 0.95892 0.94774 0.98128 1.21327 1.04393 0.99872 0.97408 0.91487 0.91723 0.92776 0.90210 0.92334 0.92939 0.89948 0.94808 0.94615 0.92562 0.88447 0.88690 0.74810 0.88653 0.88554 0.84977 0.85307 0.85917 0.85677 0.85245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 9.17 37.16 0.34 -1.78 16 2 C 0.13 1.93 3.17 -67.93 -0.22 1.71 16 3 C -0.16 -2.50 8.47 37.16 0.31 -2.19 16 4 N -0.58 -10.98 2.39 -167.47 -0.40 -11.38 16 5 C 0.21 4.90 3.66 -5.19 -0.02 4.88 16 6 C -0.52 -14.11 8.38 -34.44 -0.29 -14.39 16 7 H 0.08 2.28 7.87 -52.49 -0.41 1.87 16 8 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 9 N -0.90 -26.68 13.96 55.43 0.77 -25.91 16 10 Si 0.87 20.80 27.47 -169.99 -4.67 16.13 16 11 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 13 H -0.27 -5.95 6.54 56.52 0.37 -5.58 16 14 C 0.50 9.30 7.74 -10.99 -0.09 9.22 16 15 O -0.54 -11.75 15.25 5.56 0.08 -11.67 16 16 C 0.10 1.46 4.46 -5.19 -0.02 1.44 16 17 N -0.71 -9.36 5.53 -61.47 -0.34 -9.70 16 18 C 0.52 6.89 7.91 -10.99 -0.09 6.81 16 19 O -0.52 -8.87 16.50 -14.35 -0.24 -9.11 16 20 C 0.04 0.43 5.22 36.01 0.19 0.62 16 21 O -0.29 -3.59 9.67 -39.33 -0.38 -3.97 16 22 C 0.13 1.40 6.69 -39.22 -0.26 1.13 16 23 C -0.15 -1.44 9.99 -39.43 -0.39 -1.84 16 24 C -0.08 -0.63 10.04 -39.61 -0.40 -1.03 16 25 C -0.16 -1.19 10.04 -39.56 -0.40 -1.59 16 26 C -0.08 -0.62 10.04 -39.61 -0.40 -1.02 16 27 C -0.21 -1.88 9.04 -39.44 -0.36 -2.24 16 28 H 0.07 0.97 6.66 -51.93 -0.35 0.63 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 1.01 5.77 -51.93 -0.30 0.71 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 1.55 6.92 -51.93 -0.36 1.19 16 35 H 0.03 0.74 5.49 -51.93 -0.28 0.46 16 36 H 0.04 0.88 6.85 -51.93 -0.36 0.52 16 37 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.10 1.38 7.79 -51.92 -0.40 0.97 16 39 H 0.10 1.23 7.79 -51.93 -0.40 0.82 16 40 H 0.41 5.16 7.44 -40.82 -0.30 4.86 16 41 H 0.10 0.72 7.66 -51.93 -0.40 0.32 16 42 H 0.10 0.77 7.66 -51.93 -0.40 0.37 16 43 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 44 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 45 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 46 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 47 H 0.13 0.92 6.30 -52.48 -0.33 0.58 16 LS Contribution 388.31 15.07 5.85 5.85 Total: -1.00 -34.64 388.31 -8.34 -42.97 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -6.85 Total: 5.12 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: -2.18 Total: 1.65 kcal Atomic # 7 Polarization: -47.02 SS G_CDS: 0.03 Total: -46.99 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -0.53 Total: -24.74 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.67 Total: 16.13 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.64 -8.34 -42.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577653087.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.443 kcal (2) G-P(sol) polarization free energy of solvation -34.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds