Wall clock time and date at job start Tue Mar 31 2020 18:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46997 * 2 1 4 4 N 1.46502 * 109.47205 * 119.99542 * 2 1 3 5 5 C 1.46500 * 119.99979 * 300.00261 * 4 2 1 6 6 C 1.50699 * 109.47099 * 269.99833 * 5 4 2 7 7 H 1.07994 * 119.99995 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99601 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99511 * 180.02562 * 8 6 5 10 10 Si 1.86795 * 120.00330 * 359.97438 * 8 6 5 11 11 H 1.48506 * 109.46971 * 90.00194 * 10 8 6 12 12 H 1.48497 * 109.47421 * 209.99874 * 10 8 6 13 13 H 1.48501 * 109.47165 * 330.00063 * 10 8 6 14 14 C 1.34775 * 120.00120 * 120.00182 * 4 2 1 15 15 O 1.21273 * 120.00387 * 180.02562 * 14 4 2 16 16 C 1.50700 * 119.99926 * 359.97438 * 14 4 2 17 17 N 1.46501 * 109.47512 * 179.97438 * 16 14 4 18 18 C 1.34770 * 120.00122 * 180.02562 * 17 16 14 19 19 O 1.21282 * 120.00256 * 0.02562 * 18 17 16 20 20 C 1.50703 * 120.00010 * 180.02562 * 18 17 16 21 21 O 1.42902 * 109.47357 * 180.02562 * 20 18 17 22 22 C 1.35898 * 116.99694 * 180.02562 * 21 20 18 23 23 C 1.38735 * 120.05254 * 179.97438 * 22 21 20 24 24 C 1.38144 * 119.94607 * 179.97438 * 23 22 21 25 25 C 1.38266 * 120.05233 * 0.02562 * 24 23 22 26 26 C 1.38269 * 120.11595 * 359.95530 * 25 24 23 27 27 C 1.38142 * 120.04935 * 0.04230 * 26 25 24 28 28 H 1.08995 * 109.47588 * 300.00144 * 1 2 3 29 29 H 1.09000 * 109.46905 * 60.00745 * 1 2 3 30 30 H 1.09005 * 109.46513 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47135 * 239.99572 * 2 1 3 32 32 H 1.08996 * 109.47044 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.47035 * 300.00037 * 3 2 1 34 34 H 1.08995 * 109.47069 * 59.99538 * 3 2 1 35 35 H 1.09004 * 109.47119 * 29.99931 * 5 4 2 36 36 H 1.08998 * 109.46933 * 149.99763 * 5 4 2 37 37 H 0.97003 * 119.99810 * 180.02562 * 9 8 6 38 38 H 1.09008 * 109.46893 * 60.00374 * 16 14 4 39 39 H 1.09001 * 109.47747 * 300.00344 * 16 14 4 40 40 H 0.96998 * 119.99602 * 0.02562 * 17 16 14 41 41 H 1.08999 * 109.46805 * 59.99992 * 20 18 17 42 42 H 1.08998 * 109.47364 * 300.00344 * 20 18 17 43 43 H 1.08002 * 120.02704 * 359.70561 * 23 22 21 44 44 H 1.08001 * 119.97447 * 179.97438 * 24 23 22 45 45 H 1.08000 * 119.94089 * 179.97438 * 25 24 23 46 46 H 1.07992 * 119.97577 * 180.02562 * 26 25 24 47 47 H 1.08005 * 120.02748 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 1.6644 -0.1899 2.5268 6 6 2.7031 0.8020 2.9830 7 1 3.5427 1.0365 2.3454 8 6 2.5815 1.4103 4.2144 9 7 3.4877 2.2763 4.6123 10 14 1.1290 1.0053 5.3168 11 1 1.4781 -0.1407 6.1945 12 1 0.7980 2.1866 6.1535 13 1 -0.0438 0.6478 4.4790 14 6 2.7933 -1.7863 1.0727 15 8 3.1972 -2.3582 2.0629 16 6 3.1569 -2.3016 -0.2960 17 7 3.9998 -3.4923 -0.1616 18 6 4.4491 -4.1275 -1.2620 19 8 4.1562 -3.7132 -2.3635 20 6 5.3157 -5.3527 -1.1237 21 8 5.6616 -5.8405 -2.4215 22 6 6.4454 -6.9494 -2.4751 23 6 6.8190 -7.4775 -3.7024 24 6 7.6163 -8.6045 -3.7542 25 6 8.0414 -9.2064 -2.5843 26 6 7.6707 -8.6818 -1.3598 27 6 6.8737 -7.5550 -1.3027 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3632 -1.0278 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 3.1299 1.4425 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 0.6904 0.2975 2.4843 36 1 1.6238 -1.0224 3.2292 37 1 3.4024 2.7040 5.4788 38 1 3.7017 -1.5309 -0.8414 39 1 2.2484 -2.5587 -0.8407 40 1 4.2344 -3.8234 0.7194 41 1 4.7708 -6.1235 -0.5787 42 1 6.2240 -5.0957 -0.5786 43 1 6.4833 -7.0105 -4.6165 44 1 7.9071 -9.0163 -4.7094 45 1 8.6643 -10.0876 -2.6269 46 1 8.0044 -9.1535 -0.4475 47 1 6.5840 -7.1457 -0.3461 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577653087.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:48 Heat of formation + Delta-G solvation = -98.378217 kcal Electronic energy + Delta-G solvation = -28001.857406 eV Core-core repulsion = 23956.563584 eV Total energy + Delta-G solvation = -4045.293823 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.61268 -41.07285 -40.16606 -38.21476 -37.75581 -35.67929 -34.83459 -32.64450 -32.13363 -31.50546 -30.81858 -29.59816 -28.03328 -27.56512 -24.38180 -23.65072 -23.11484 -22.77818 -21.68109 -19.99792 -19.43554 -19.06738 -18.73113 -17.79780 -17.56978 -17.21550 -17.00602 -16.71405 -16.63222 -16.30146 -15.79858 -15.43017 -15.27354 -14.98646 -14.88274 -14.53587 -14.39855 -14.31285 -14.23957 -13.72496 -13.68690 -13.60607 -13.43440 -13.25524 -12.89679 -12.66071 -12.47261 -12.39427 -12.30835 -12.11522 -11.92843 -11.84412 -11.77560 -11.55332 -11.13437 -10.84056 -10.78530 -10.38324 -9.94397 -9.49633 -9.20473 -8.29457 -6.32225 0.40206 0.48188 1.31512 1.34718 1.36587 1.37049 1.44798 1.59867 2.17075 2.32655 2.63870 2.85343 3.04374 3.37455 3.50069 3.87295 3.93455 4.00464 4.02935 4.04693 4.20429 4.25459 4.28390 4.30882 4.37912 4.48267 4.54416 4.69982 4.72584 4.86556 4.87863 4.90327 5.01542 5.07097 5.10086 5.11785 5.34555 5.38249 5.47472 5.48932 5.56595 5.61735 5.61856 5.82360 6.24569 6.26852 6.40474 6.58098 6.69381 6.97627 7.15423 7.32363 8.86876 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019270 B = 0.002109 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.663716 B =13273.595931 C =14160.856582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.122 3.878 3 C -0.152 4.152 4 N -0.586 5.586 5 C 0.225 3.775 6 C -0.518 4.518 7 H 0.035 0.965 8 C 0.010 3.990 9 N -0.945 5.945 10 Si 0.940 3.060 11 H -0.277 1.277 12 H -0.281 1.281 13 H -0.239 1.239 14 C 0.498 3.502 15 O -0.579 6.579 16 C 0.112 3.888 17 N -0.706 5.706 18 C 0.520 3.480 19 O -0.562 6.562 20 C 0.045 3.955 21 O -0.317 6.317 22 C 0.104 3.896 23 C -0.170 4.170 24 C -0.083 4.083 25 C -0.162 4.162 26 C -0.086 4.086 27 C -0.218 4.218 28 H 0.049 0.951 29 H 0.095 0.905 30 H 0.064 0.936 31 H 0.111 0.889 32 H 0.033 0.967 33 H 0.089 0.911 34 H 0.047 0.953 35 H 0.051 0.949 36 H 0.021 0.979 37 H 0.266 0.734 38 H 0.103 0.897 39 H 0.118 0.882 40 H 0.418 0.582 41 H 0.123 0.877 42 H 0.118 0.882 43 H 0.128 0.872 44 H 0.152 0.848 45 H 0.148 0.852 46 H 0.148 0.852 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.696 -20.122 -15.055 25.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.020 3.980 3 C -0.210 4.210 4 N -0.316 5.316 5 C 0.103 3.897 6 C -0.557 4.557 7 H 0.053 0.947 8 C -0.188 4.188 9 N -0.586 5.586 10 Si 0.764 3.236 11 H -0.202 1.202 12 H -0.206 1.206 13 H -0.162 1.162 14 C 0.286 3.714 15 O -0.460 6.460 16 C -0.015 4.015 17 N -0.363 5.363 18 C 0.307 3.693 19 O -0.440 6.440 20 C -0.033 4.033 21 O -0.231 6.231 22 C 0.060 3.940 23 C -0.189 4.189 24 C -0.101 4.101 25 C -0.180 4.180 26 C -0.104 4.104 27 C -0.237 4.237 28 H 0.068 0.932 29 H 0.114 0.886 30 H 0.083 0.917 31 H 0.129 0.871 32 H 0.052 0.948 33 H 0.108 0.892 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.039 0.961 37 H 0.075 0.925 38 H 0.120 0.880 39 H 0.136 0.864 40 H 0.257 0.743 41 H 0.141 0.859 42 H 0.136 0.864 43 H 0.146 0.854 44 H 0.170 0.830 45 H 0.165 0.835 46 H 0.166 0.834 47 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.620 -19.853 -15.346 25.144 hybrid contribution -0.032 0.484 1.611 1.683 sum 1.588 -19.368 -13.734 23.797 Atomic orbital electron populations 1.22140 0.93138 1.02874 1.03365 1.21494 0.96051 0.93791 0.86708 1.22067 1.00240 0.96036 1.02619 1.48065 1.48924 1.26314 1.08343 1.19330 0.95848 0.93595 0.80956 1.21477 1.08851 1.23008 1.02388 0.94718 1.25775 0.99177 0.94649 0.99180 1.70046 1.37071 1.29971 1.21499 0.85827 0.80563 0.77867 0.79383 1.20237 1.20627 1.16181 1.20801 0.78448 0.80899 0.91234 1.90632 1.54865 1.59588 1.40883 1.21114 0.97556 0.89019 0.93830 1.45531 1.51881 1.28704 1.10153 1.20420 0.80303 0.84841 0.83755 1.90729 1.58790 1.67481 1.26994 1.22530 1.00695 0.94936 0.85157 1.86089 1.65489 1.41815 1.29687 1.19348 0.92301 0.86810 0.95568 1.20701 1.03093 0.99255 0.95836 1.21300 0.95099 0.93561 1.00147 1.21472 1.02452 1.01946 0.92148 1.21340 0.95290 0.94372 0.99356 1.21566 1.04442 1.00213 0.97442 0.93216 0.88636 0.91679 0.87126 0.94763 0.89247 0.93345 0.93132 0.96076 0.92532 0.87954 0.86381 0.74285 0.85915 0.86400 0.85391 0.83049 0.83456 0.83400 0.83717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.63 9.17 71.98 0.66 -2.97 16 2 C 0.12 3.44 3.17 44.99 0.14 3.58 16 3 C -0.15 -4.77 8.47 71.98 0.61 -4.16 16 4 N -0.59 -21.89 2.39 -802.16 -1.91 -23.81 16 5 C 0.22 10.24 3.66 85.63 0.31 10.55 16 6 C -0.52 -28.81 8.38 25.60 0.21 -28.59 16 7 H 0.03 2.17 7.87 -2.91 -0.02 2.14 16 8 C 0.01 0.56 5.47 84.66 0.46 1.03 16 9 N -0.95 -58.35 13.96 21.45 0.30 -58.05 16 10 Si 0.94 43.09 27.47 68.60 1.88 44.98 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 12 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 13 H -0.24 -9.77 6.54 99.48 0.65 -9.12 16 14 C 0.50 18.21 7.74 87.66 0.68 18.89 16 15 O -0.58 -25.37 15.25 -3.01 -0.05 -25.41 16 16 C 0.11 3.07 4.46 85.63 0.38 3.45 16 17 N -0.71 -17.87 5.53 -466.78 -2.58 -20.45 16 18 C 0.52 13.37 7.91 87.66 0.69 14.06 16 19 O -0.56 -18.82 16.50 16.00 0.26 -18.56 16 20 C 0.04 0.85 5.22 71.24 0.37 1.22 16 21 O -0.32 -7.80 9.67 -73.37 -0.71 -8.51 16 22 C 0.10 2.19 6.69 22.51 0.15 2.34 16 23 C -0.17 -3.25 9.99 22.37 0.22 -3.02 16 24 C -0.08 -1.17 10.04 22.25 0.22 -0.94 16 25 C -0.16 -2.01 10.04 22.28 0.22 -1.79 16 26 C -0.09 -1.14 10.04 22.25 0.22 -0.91 16 27 C -0.22 -3.53 9.04 22.36 0.20 -3.33 16 28 H 0.05 1.32 6.66 -2.39 -0.02 1.31 16 29 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.06 1.37 8.14 -2.38 -0.02 1.36 16 31 H 0.11 2.47 5.77 -2.39 -0.01 2.45 16 32 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16 34 H 0.05 1.84 6.92 -2.39 -0.02 1.82 16 35 H 0.05 2.15 5.49 -2.39 -0.01 2.14 16 36 H 0.02 1.03 6.85 -2.39 -0.02 1.02 16 37 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 38 H 0.10 2.76 7.79 -2.38 -0.02 2.74 16 39 H 0.12 2.74 7.79 -2.39 -0.02 2.72 16 40 H 0.42 10.07 7.44 -92.71 -0.69 9.38 16 41 H 0.12 1.61 7.66 -2.39 -0.02 1.59 16 42 H 0.12 1.69 7.66 -2.39 -0.02 1.67 16 43 H 0.13 2.38 8.06 -2.91 -0.02 2.36 16 44 H 0.15 1.30 8.06 -2.91 -0.02 1.28 16 45 H 0.15 1.05 8.06 -2.91 -0.02 1.03 16 46 H 0.15 1.21 8.06 -2.91 -0.02 1.19 16 47 H 0.15 1.74 6.30 -2.91 -0.02 1.72 16 Total: -1.00 -79.25 388.31 3.22 -76.04 By element: Atomic # 1 Polarization: 24.14 SS G_CDS: 0.24 Total: 24.38 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: 5.78 Total: 9.39 kcal Atomic # 7 Polarization: -98.11 SS G_CDS: -4.20 Total: -102.31 kcal Atomic # 8 Polarization: -51.99 SS G_CDS: -0.49 Total: -52.48 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 1.88 Total: 44.98 kcal Total: -79.25 3.22 -76.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577653087.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.341 kcal (2) G-P(sol) polarization free energy of solvation -79.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds