Wall clock time and date at job start Tue Mar 31 2020 17:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47393 * 2 1 4 4 H 1.09001 * 109.47075 * 179.75784 * 3 2 1 5 5 C 1.50701 * 109.46966 * 59.75710 * 3 2 1 6 6 H 1.07997 * 119.99990 * 240.00619 * 5 3 2 7 7 C 1.37876 * 120.00263 * 59.99789 * 5 3 2 8 8 N 1.31524 * 119.99612 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00124 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47104 * 60.00386 * 9 7 5 11 11 H 1.48499 * 109.47014 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47100 * 300.00059 * 9 7 5 13 13 N 1.46895 * 109.47073 * 299.75518 * 3 2 1 14 14 C 1.46894 * 111.00219 * 273.62204 * 13 3 2 15 15 C 1.50702 * 109.47124 * 175.87320 * 14 13 3 16 16 O 1.21277 * 120.00211 * 359.97438 * 15 14 13 17 17 N 1.34781 * 119.99949 * 179.97438 * 15 14 13 18 18 C 1.46494 * 120.00029 * 180.02562 * 17 15 14 19 19 C 1.53000 * 109.47270 * 180.02562 * 18 17 15 20 20 H 1.09002 * 109.70894 * 305.59249 * 19 18 17 21 21 C 1.53473 * 109.71569 * 184.99888 * 19 18 17 22 22 O 1.43164 * 108.25408 * 180.58160 * 21 19 18 23 23 C 1.36105 * 116.72007 * 46.16891 * 22 21 19 24 24 C 1.38702 * 119.40504 * 162.81863 * 23 22 21 25 25 C 1.38199 * 120.06821 * 179.79051 * 24 23 22 26 26 C 1.38252 * 120.11459 * 0.07759 * 25 24 23 27 27 C 1.38197 * 120.11056 * 0.02562 * 26 25 24 28 28 C 1.38703 * 120.06901 * 0.02562 * 27 26 25 29 29 O 1.36109 * 119.39337 * 179.71169 * 28 27 26 30 30 H 1.09004 * 109.47169 * 62.17737 * 1 2 3 31 31 H 1.08997 * 109.47046 * 182.17054 * 1 2 3 32 32 H 1.08991 * 109.47299 * 302.17322 * 1 2 3 33 33 H 1.09002 * 109.47331 * 239.99556 * 2 1 3 34 34 H 1.09004 * 109.47295 * 120.00380 * 2 1 3 35 35 H 0.97004 * 119.99417 * 179.97438 * 8 7 5 36 36 H 1.00903 * 110.99948 * 149.66717 * 13 3 2 37 37 H 1.08999 * 109.47520 * 295.87801 * 14 13 3 38 38 H 1.09004 * 109.46981 * 55.87559 * 14 13 3 39 39 H 0.97005 * 120.00023 * 359.97438 * 17 15 14 40 40 H 1.09001 * 109.47301 * 300.00085 * 18 17 15 41 41 H 1.08998 * 109.47567 * 60.00388 * 18 17 15 42 42 H 1.08999 * 109.70505 * 300.27091 * 21 19 18 43 43 H 1.09003 * 109.70469 * 60.88669 * 21 19 18 44 44 H 1.08006 * 119.96535 * 359.84987 * 24 23 22 45 45 H 1.07996 * 119.94100 * 180.02562 * 25 24 23 46 46 H 1.07997 * 119.94727 * 180.02562 * 26 25 24 47 47 H 1.08001 * 119.96347 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4424 0.0043 5 6 1.5328 2.1546 1.2275 6 1 0.9123 3.0325 1.1247 7 6 1.8608 1.6853 2.4817 8 7 2.6168 0.6164 2.6069 9 14 1.2314 2.5676 4.0031 10 1 -0.2536 2.5670 3.9970 11 1 1.7221 1.8697 5.2186 12 1 1.7259 3.9678 4.0034 13 7 1.5552 2.1332 -1.2023 14 6 2.4610 1.9125 -2.3376 15 6 1.8810 2.5494 -3.5742 16 8 0.8176 3.1296 -3.5156 17 7 2.5441 2.4742 -4.7452 18 6 1.9806 3.0937 -5.9471 19 6 2.9239 2.8637 -7.1295 20 1 3.9228 3.2196 -6.8775 21 6 2.4022 3.6153 -8.3618 22 8 3.2985 3.3680 -9.4505 23 6 3.6848 2.0774 -9.6441 24 6 4.2439 1.7088 -10.8588 25 6 4.6449 0.4031 -11.0686 26 6 4.4887 -0.5396 -10.0695 27 6 3.9304 -0.1795 -8.8577 28 6 3.5248 1.1290 -8.6409 29 8 2.9712 1.4673 -7.4444 30 1 -0.3634 0.4797 -0.9089 31 1 -0.3633 -1.0269 0.0389 32 1 -0.3633 0.5472 0.8698 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 2.8478 0.2864 3.4893 36 1 1.4289 3.1189 -1.0269 37 1 3.4315 2.3585 -2.1202 38 1 2.5820 0.8419 -2.5030 39 1 3.3948 2.0104 -4.7919 40 1 1.0101 2.6478 -6.1649 41 1 1.8595 4.1642 -5.7814 42 1 1.4056 3.2553 -8.6172 43 1 2.3649 4.6842 -8.1518 44 1 4.3668 2.4433 -11.6411 45 1 5.0804 0.1185 -12.0150 46 1 4.8034 -1.5592 -10.2363 47 1 3.8098 -0.9178 -8.0787 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581734734.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:14 Heat of formation + Delta-G solvation = -81.263978 kcal Electronic energy + Delta-G solvation = -28070.032272 eV Core-core repulsion = 24025.480578 eV Total energy + Delta-G solvation = -4044.551694 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.69723 -39.45288 -38.14724 -37.66096 -36.09105 -34.90414 -32.61117 -31.90712 -31.02014 -30.64790 -29.25892 -27.60465 -26.28752 -24.69782 -23.57676 -23.09456 -22.90476 -21.21922 -20.24070 -19.17744 -18.98470 -17.94474 -17.56518 -16.95377 -16.15855 -15.98946 -15.56342 -15.50399 -15.31346 -14.95559 -14.84962 -14.64517 -14.30099 -14.17622 -13.85224 -13.63537 -13.31865 -13.05464 -12.83130 -12.77207 -12.28858 -12.18352 -11.98787 -11.81433 -11.58414 -11.41142 -11.37436 -10.91000 -10.87224 -10.79449 -10.39022 -10.09414 -9.89074 -9.44726 -9.33465 -9.10251 -9.02935 -8.79824 -8.46345 -8.45388 -7.25521 -6.02338 -4.07413 0.92038 0.93321 2.53688 2.74396 2.94212 3.08310 3.32203 3.35039 3.36479 3.40189 3.85656 4.16504 4.23897 4.31432 4.41324 4.62126 4.69761 4.86331 4.93643 5.00451 5.04713 5.12676 5.22221 5.27753 5.41026 5.47999 5.52318 5.77596 5.79996 5.86281 5.89456 6.09938 6.25011 6.35937 6.52746 6.54710 6.71039 6.87773 7.02527 7.23245 7.26917 7.48900 7.53759 7.76363 7.80044 7.83633 8.25631 8.36572 8.44987 8.65280 9.01136 9.57192 11.03646 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.024700 B = 0.001949 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.317678 B =14363.483253 C =14993.602026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.103 4.103 3 C 0.217 3.783 4 H 0.002 0.998 5 C -0.512 4.512 6 H 0.060 0.940 7 C 0.063 3.937 8 N -0.890 5.890 9 Si 0.896 3.104 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.669 5.669 14 C 0.045 3.955 15 C 0.515 3.485 16 O -0.523 6.523 17 N -0.738 5.738 18 C 0.133 3.867 19 C 0.040 3.960 20 H 0.093 0.907 21 C 0.030 3.970 22 O -0.305 6.305 23 C 0.047 3.953 24 C -0.115 4.115 25 C -0.118 4.118 26 C -0.115 4.115 27 C -0.113 4.113 28 C 0.054 3.946 29 O -0.299 6.299 30 H 0.044 0.956 31 H 0.013 0.987 32 H 0.056 0.944 33 H 0.008 0.992 34 H 0.087 0.913 35 H 0.261 0.739 36 H 0.340 0.660 37 H 0.048 0.952 38 H 0.094 0.906 39 H 0.402 0.598 40 H 0.080 0.920 41 H 0.091 0.909 42 H 0.083 0.917 43 H 0.127 0.873 44 H 0.133 0.867 45 H 0.131 0.869 46 H 0.132 0.868 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.834 1.245 -27.229 27.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.141 4.141 3 C 0.109 3.891 4 H 0.019 0.981 5 C -0.551 4.551 6 H 0.078 0.922 7 C -0.139 4.139 8 N -0.528 5.528 9 Si 0.723 3.277 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.204 1.204 13 N -0.301 5.301 14 C -0.088 4.088 15 C 0.302 3.698 16 O -0.397 6.397 17 N -0.394 5.394 18 C 0.009 3.991 19 C -0.017 4.017 20 H 0.111 0.889 21 C -0.046 4.046 22 O -0.220 6.220 23 C 0.002 3.998 24 C -0.133 4.133 25 C -0.136 4.136 26 C -0.134 4.134 27 C -0.132 4.132 28 C 0.009 3.991 29 O -0.213 6.213 30 H 0.063 0.937 31 H 0.032 0.968 32 H 0.075 0.925 33 H 0.027 0.973 34 H 0.106 0.894 35 H 0.071 0.929 36 H 0.158 0.842 37 H 0.066 0.934 38 H 0.112 0.888 39 H 0.236 0.764 40 H 0.098 0.902 41 H 0.109 0.891 42 H 0.101 0.899 43 H 0.145 0.855 44 H 0.151 0.849 45 H 0.149 0.851 46 H 0.150 0.850 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.657 1.099 -27.143 27.562 hybrid contribution 0.839 0.794 1.111 1.603 sum 5.496 1.893 -26.032 26.673 Atomic orbital electron populations 1.21454 0.97394 0.97317 1.01677 1.21447 0.95223 0.98082 0.99365 1.19177 0.93009 0.91604 0.85261 0.98077 1.21137 1.31719 1.12055 0.90191 0.92192 1.24882 0.95039 0.95026 0.98916 1.69878 1.36749 1.22771 1.23422 0.86600 0.79360 0.79602 0.82093 1.20158 1.21373 1.20385 1.60423 1.46993 1.17251 1.05447 1.21780 0.95278 1.01138 0.90636 1.21134 0.84774 0.79534 0.84314 1.90680 1.21538 1.42116 1.85343 1.45950 1.25823 1.59208 1.08375 1.21168 0.96325 0.99473 0.82137 1.23449 1.01586 0.81024 0.95608 0.88877 1.23588 0.93066 1.02903 0.85052 1.86321 1.62436 1.23066 1.50134 1.18960 1.02239 0.84127 0.94501 1.20455 1.01446 0.96981 0.94461 1.20935 1.00846 0.92131 0.99731 1.20957 0.99750 1.00022 0.92643 1.20526 1.00037 0.93704 0.98889 1.18967 1.00420 0.94619 0.85116 1.86408 1.76794 1.24921 1.33218 0.93672 0.96804 0.92539 0.97279 0.89429 0.92897 0.84204 0.93404 0.88824 0.76350 0.90172 0.89116 0.89901 0.85505 0.84862 0.85077 0.84995 0.84589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.81 9.52 37.16 0.35 -2.45 16 2 C -0.10 -2.49 5.59 -26.73 -0.15 -2.63 16 3 C 0.22 5.34 2.30 -68.87 -0.16 5.18 16 4 H 0.00 0.04 7.83 -51.93 -0.41 -0.36 16 5 C -0.51 -13.76 7.28 -34.44 -0.25 -14.01 16 6 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 7 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 8 N -0.89 -24.88 11.32 55.43 0.63 -24.25 16 9 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 N -0.67 -14.43 5.15 -109.22 -0.56 -15.00 16 14 C 0.04 0.77 5.93 -4.98 -0.03 0.74 16 15 C 0.52 8.28 7.88 -10.98 -0.09 8.19 16 16 O -0.52 -10.34 16.29 5.56 0.09 -10.25 16 17 N -0.74 -8.63 5.52 -60.30 -0.33 -8.96 16 18 C 0.13 1.30 5.36 -4.05 -0.02 1.28 16 19 C 0.04 0.34 3.06 -26.49 -0.08 0.26 16 20 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 21 C 0.03 0.22 6.56 37.40 0.25 0.46 16 22 O -0.31 -2.92 10.42 -32.86 -0.34 -3.27 16 23 C 0.05 0.46 6.49 -39.14 -0.25 0.21 16 24 C -0.11 -0.94 9.96 -39.42 -0.39 -1.33 16 25 C -0.12 -0.81 10.04 -39.59 -0.40 -1.21 16 26 C -0.12 -0.83 10.04 -39.59 -0.40 -1.23 16 27 C -0.11 -1.01 9.96 -39.42 -0.39 -1.40 16 28 C 0.05 0.55 6.49 -39.14 -0.25 0.30 16 29 O -0.30 -3.15 10.04 -32.87 -0.33 -3.48 16 30 H 0.04 1.03 7.68 -51.93 -0.40 0.63 16 31 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 1.40 7.13 -51.93 -0.37 1.03 16 33 H 0.01 0.19 7.48 -51.93 -0.39 -0.20 16 34 H 0.09 2.34 6.08 -51.93 -0.32 2.02 16 35 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 36 H 0.34 7.52 8.05 -39.29 -0.32 7.20 16 37 H 0.05 0.77 8.13 -51.93 -0.42 0.34 16 38 H 0.09 1.56 7.45 -51.93 -0.39 1.18 16 39 H 0.40 3.91 8.47 -40.82 -0.35 3.56 16 40 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.13 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.13 0.88 8.06 -52.48 -0.42 0.45 16 45 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 46 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 47 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 386.66 15.07 5.83 5.83 Total: -1.00 -32.26 386.66 -9.52 -41.78 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -7.11 Total: 7.46 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -2.36 Total: -6.03 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: -0.27 Total: -48.21 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -0.58 Total: -17.00 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.26 -9.52 -41.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581734734.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.484 kcal (2) G-P(sol) polarization free energy of solvation -32.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds