Wall clock time and date at job start Tue Mar 31 2020 17:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47393 * 2 1 4 4 H 1.09001 * 109.47075 * 179.75784 * 3 2 1 5 5 C 1.50701 * 109.46966 * 59.75710 * 3 2 1 6 6 H 1.07997 * 119.99990 * 240.00619 * 5 3 2 7 7 C 1.37876 * 120.00263 * 59.99789 * 5 3 2 8 8 N 1.31524 * 119.99612 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00124 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47104 * 60.00386 * 9 7 5 11 11 H 1.48499 * 109.47014 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47100 * 300.00059 * 9 7 5 13 13 N 1.46895 * 109.47073 * 299.75518 * 3 2 1 14 14 C 1.46894 * 111.00219 * 273.62204 * 13 3 2 15 15 C 1.50702 * 109.47124 * 175.87320 * 14 13 3 16 16 O 1.21277 * 120.00211 * 359.97438 * 15 14 13 17 17 N 1.34781 * 119.99949 * 179.97438 * 15 14 13 18 18 C 1.46494 * 120.00029 * 180.02562 * 17 15 14 19 19 C 1.53000 * 109.47270 * 180.02562 * 18 17 15 20 20 H 1.09002 * 109.70894 * 305.59249 * 19 18 17 21 21 C 1.53473 * 109.71569 * 184.99888 * 19 18 17 22 22 O 1.43164 * 108.25408 * 180.58160 * 21 19 18 23 23 C 1.36105 * 116.72007 * 46.16891 * 22 21 19 24 24 C 1.38702 * 119.40504 * 162.81863 * 23 22 21 25 25 C 1.38199 * 120.06821 * 179.79051 * 24 23 22 26 26 C 1.38252 * 120.11459 * 0.07759 * 25 24 23 27 27 C 1.38197 * 120.11056 * 0.02562 * 26 25 24 28 28 C 1.38703 * 120.06901 * 0.02562 * 27 26 25 29 29 O 1.36109 * 119.39337 * 179.71169 * 28 27 26 30 30 H 1.09004 * 109.47169 * 62.17737 * 1 2 3 31 31 H 1.08997 * 109.47046 * 182.17054 * 1 2 3 32 32 H 1.08991 * 109.47299 * 302.17322 * 1 2 3 33 33 H 1.09002 * 109.47331 * 239.99556 * 2 1 3 34 34 H 1.09004 * 109.47295 * 120.00380 * 2 1 3 35 35 H 0.97004 * 119.99417 * 179.97438 * 8 7 5 36 36 H 1.00903 * 110.99948 * 149.66717 * 13 3 2 37 37 H 1.08999 * 109.47520 * 295.87801 * 14 13 3 38 38 H 1.09004 * 109.46981 * 55.87559 * 14 13 3 39 39 H 0.97005 * 120.00023 * 359.97438 * 17 15 14 40 40 H 1.09001 * 109.47301 * 300.00085 * 18 17 15 41 41 H 1.08998 * 109.47567 * 60.00388 * 18 17 15 42 42 H 1.08999 * 109.70505 * 300.27091 * 21 19 18 43 43 H 1.09003 * 109.70469 * 60.88669 * 21 19 18 44 44 H 1.08006 * 119.96535 * 359.84987 * 24 23 22 45 45 H 1.07996 * 119.94100 * 180.02562 * 25 24 23 46 46 H 1.07997 * 119.94727 * 180.02562 * 26 25 24 47 47 H 1.08001 * 119.96347 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4424 0.0043 5 6 1.5328 2.1546 1.2275 6 1 0.9123 3.0325 1.1247 7 6 1.8608 1.6853 2.4817 8 7 2.6168 0.6164 2.6069 9 14 1.2314 2.5676 4.0031 10 1 -0.2536 2.5670 3.9970 11 1 1.7221 1.8697 5.2186 12 1 1.7259 3.9678 4.0034 13 7 1.5552 2.1332 -1.2023 14 6 2.4610 1.9125 -2.3376 15 6 1.8810 2.5494 -3.5742 16 8 0.8176 3.1296 -3.5156 17 7 2.5441 2.4742 -4.7452 18 6 1.9806 3.0937 -5.9471 19 6 2.9239 2.8637 -7.1295 20 1 3.9228 3.2196 -6.8775 21 6 2.4022 3.6153 -8.3618 22 8 3.2985 3.3680 -9.4505 23 6 3.6848 2.0774 -9.6441 24 6 4.2439 1.7088 -10.8588 25 6 4.6449 0.4031 -11.0686 26 6 4.4887 -0.5396 -10.0695 27 6 3.9304 -0.1795 -8.8577 28 6 3.5248 1.1290 -8.6409 29 8 2.9712 1.4673 -7.4444 30 1 -0.3634 0.4797 -0.9089 31 1 -0.3633 -1.0269 0.0389 32 1 -0.3633 0.5472 0.8698 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 2.8478 0.2864 3.4893 36 1 1.4289 3.1189 -1.0269 37 1 3.4315 2.3585 -2.1202 38 1 2.5820 0.8419 -2.5030 39 1 3.3948 2.0104 -4.7919 40 1 1.0101 2.6478 -6.1649 41 1 1.8595 4.1642 -5.7814 42 1 1.4056 3.2553 -8.6172 43 1 2.3649 4.6842 -8.1518 44 1 4.3668 2.4433 -11.6411 45 1 5.0804 0.1185 -12.0150 46 1 4.8034 -1.5592 -10.2363 47 1 3.8098 -0.9178 -8.0787 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581734734.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:13 Heat of formation + Delta-G solvation = -103.180237 kcal Electronic energy + Delta-G solvation = -28070.982632 eV Core-core repulsion = 24025.480578 eV Total energy + Delta-G solvation = -4045.502054 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.35144 -40.69823 -38.81482 -38.34448 -37.86139 -35.96644 -34.46281 -32.89293 -32.39489 -31.61613 -30.00091 -29.09432 -27.52232 -26.07200 -25.00658 -24.31299 -23.63087 -21.98070 -21.39712 -20.84150 -19.85384 -18.86399 -18.57381 -18.01788 -17.57383 -17.01956 -16.97154 -16.54693 -16.20269 -16.06209 -15.78871 -15.58170 -15.36404 -15.13158 -14.95686 -14.86235 -14.76456 -14.47071 -14.08767 -13.81174 -13.69547 -13.49208 -13.00235 -12.83223 -12.79636 -12.76470 -12.66453 -12.41541 -12.17116 -12.05292 -11.98064 -11.73414 -11.52531 -11.34032 -10.87218 -10.76418 -10.50954 -10.17959 -9.64577 -9.09676 -9.00029 -8.09296 -6.20507 0.30714 0.32029 1.43399 1.45019 1.52073 1.64125 1.85736 2.05238 2.17839 2.44372 2.74584 3.18185 3.19560 3.45246 3.59627 3.69981 3.73821 3.94086 4.11350 4.17626 4.24397 4.37262 4.42115 4.44718 4.46625 4.49223 4.60617 4.65158 4.67859 4.79337 4.89951 4.95250 5.18041 5.23108 5.29286 5.33823 5.37695 5.53043 5.55212 5.71324 5.71788 5.81325 5.87351 5.88430 6.28336 6.37321 6.41255 6.49636 6.78187 6.99342 7.25272 7.47568 8.95452 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.024700 B = 0.001949 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.317678 B =14363.483253 C =14993.602026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.099 4.099 3 C 0.223 3.777 4 H -0.022 1.022 5 C -0.526 4.526 6 H 0.053 0.947 7 C 0.020 3.980 8 N -0.913 5.913 9 Si 0.953 3.047 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.273 1.273 13 N -0.674 5.674 14 C 0.043 3.957 15 C 0.522 3.478 16 O -0.564 6.564 17 N -0.720 5.720 18 C 0.135 3.865 19 C 0.047 3.953 20 H 0.102 0.898 21 C 0.029 3.971 22 O -0.316 6.316 23 C 0.027 3.973 24 C -0.124 4.124 25 C -0.114 4.114 26 C -0.114 4.114 27 C -0.129 4.129 28 C 0.031 3.969 29 O -0.317 6.317 30 H 0.045 0.955 31 H 0.034 0.966 32 H 0.033 0.967 33 H 0.025 0.975 34 H 0.062 0.938 35 H 0.262 0.738 36 H 0.334 0.666 37 H 0.065 0.935 38 H 0.101 0.899 39 H 0.414 0.586 40 H 0.069 0.931 41 H 0.105 0.895 42 H 0.082 0.918 43 H 0.155 0.845 44 H 0.147 0.853 45 H 0.161 0.839 46 H 0.157 0.843 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.389 1.307 -28.877 29.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.138 4.138 3 C 0.115 3.885 4 H -0.005 1.005 5 C -0.565 4.565 6 H 0.071 0.929 7 C -0.180 4.180 8 N -0.552 5.552 9 Si 0.780 3.220 10 H -0.201 1.201 11 H -0.209 1.209 12 H -0.198 1.198 13 N -0.306 5.306 14 C -0.089 4.089 15 C 0.309 3.691 16 O -0.441 6.441 17 N -0.374 5.374 18 C 0.011 3.989 19 C -0.010 4.010 20 H 0.119 0.881 21 C -0.047 4.047 22 O -0.231 6.231 23 C -0.018 4.018 24 C -0.142 4.142 25 C -0.132 4.132 26 C -0.132 4.132 27 C -0.147 4.147 28 C -0.014 4.014 29 O -0.233 6.233 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.044 0.956 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.152 0.848 37 H 0.082 0.918 38 H 0.119 0.881 39 H 0.250 0.750 40 H 0.087 0.913 41 H 0.123 0.877 42 H 0.101 0.899 43 H 0.172 0.828 44 H 0.164 0.836 45 H 0.179 0.821 46 H 0.175 0.825 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 5.247 1.151 -28.838 29.334 hybrid contribution 0.728 0.729 1.499 1.819 sum 5.975 1.880 -27.339 28.047 Atomic orbital electron populations 1.21313 0.96530 0.98258 1.00551 1.21341 0.95879 0.97682 0.98876 1.18968 0.91417 0.92051 0.86027 1.00460 1.21385 1.31599 1.12042 0.91437 0.92920 1.25573 0.95256 0.95695 1.01483 1.69992 1.37541 1.23748 1.23918 0.85683 0.78674 0.78740 0.78953 1.20088 1.20947 1.19800 1.60305 1.48255 1.16623 1.05383 1.21824 0.95269 1.01944 0.89893 1.20791 0.84261 0.79087 0.84973 1.90669 1.23282 1.44171 1.86014 1.45751 1.25694 1.58165 1.07787 1.21271 0.96047 0.99976 0.81573 1.23418 1.01583 0.80601 0.95403 0.88055 1.23756 0.92601 1.04331 0.83995 1.86299 1.62906 1.23089 1.50783 1.19232 1.03127 0.84258 0.95181 1.20787 1.01122 0.98039 0.94286 1.21326 0.99697 0.91418 1.00734 1.21312 0.98658 1.01373 0.91888 1.20773 1.00596 0.93439 0.99907 1.19213 1.01557 0.95378 0.85222 1.86353 1.77240 1.25971 1.33731 0.93616 0.94724 0.94754 0.95624 0.91940 0.92918 0.84802 0.91771 0.88126 0.74982 0.91286 0.87672 0.89938 0.82783 0.83552 0.82148 0.82494 0.84397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.01 9.52 71.98 0.69 -4.33 16 2 C -0.10 -4.80 5.59 30.59 0.17 -4.63 16 3 C 0.22 11.11 2.30 44.17 0.10 11.21 16 4 H -0.02 -1.18 7.83 -2.39 -0.02 -1.20 16 5 C -0.53 -28.56 7.28 25.60 0.19 -28.37 16 6 H 0.05 2.88 7.60 -2.91 -0.02 2.85 16 7 C 0.02 1.06 5.30 84.65 0.45 1.51 16 8 N -0.91 -51.50 11.32 21.45 0.24 -51.26 16 9 Si 0.95 43.58 29.54 68.60 2.03 45.61 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 12 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 13 N -0.67 -29.17 5.15 -499.47 -2.57 -31.74 16 14 C 0.04 1.47 5.93 85.56 0.51 1.98 16 15 C 0.52 16.40 7.88 87.66 0.69 17.09 16 16 O -0.56 -22.19 16.29 -3.02 -0.05 -22.24 16 17 N -0.72 -15.99 5.52 -463.07 -2.56 -18.55 16 18 C 0.14 2.48 5.36 86.38 0.46 2.94 16 19 C 0.05 0.73 3.06 30.75 0.09 0.83 16 20 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 21 C 0.03 0.39 6.56 72.14 0.47 0.86 16 22 O -0.32 -5.76 10.42 -82.52 -0.86 -6.62 16 23 C 0.03 0.51 6.49 22.56 0.15 0.66 16 24 C -0.12 -1.85 9.96 22.37 0.22 -1.63 16 25 C -0.11 -1.30 10.04 22.26 0.22 -1.07 16 26 C -0.11 -1.42 10.04 22.26 0.22 -1.20 16 27 C -0.13 -2.20 9.96 22.37 0.22 -1.98 16 28 C 0.03 0.63 6.49 22.56 0.15 0.77 16 29 O -0.32 -6.58 10.04 -82.57 -0.83 -7.41 16 30 H 0.04 2.06 7.68 -2.38 -0.02 2.04 16 31 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.03 1.69 7.13 -2.39 -0.02 1.68 16 33 H 0.03 1.12 7.48 -2.39 -0.02 1.10 16 34 H 0.06 3.36 6.08 -2.39 -0.01 3.35 16 35 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 36 H 0.33 14.97 8.05 -89.69 -0.72 14.25 16 37 H 0.06 1.99 8.13 -2.39 -0.02 1.97 16 38 H 0.10 3.26 7.45 -2.39 -0.02 3.24 16 39 H 0.41 7.44 8.47 -92.70 -0.79 6.66 16 40 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.15 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 45 H 0.16 0.82 8.06 -2.91 -0.02 0.80 16 46 H 0.16 1.07 8.06 -2.91 -0.02 1.05 16 47 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -69.66 386.66 -0.10 -69.76 By element: Atomic # 1 Polarization: 28.31 SS G_CDS: -0.51 Total: 27.80 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: 5.01 Total: -5.36 kcal Atomic # 7 Polarization: -96.66 SS G_CDS: -4.88 Total: -101.54 kcal Atomic # 8 Polarization: -34.53 SS G_CDS: -1.74 Total: -36.27 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -69.66 -0.10 -69.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581734734.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.417 kcal (2) G-P(sol) polarization free energy of solvation -69.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds