Wall clock time and date at job start Tue Mar 31 2020 17:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47510 * 2 1 4 4 H 1.08996 * 109.47163 * 185.16422 * 3 2 1 5 5 C 1.50704 * 109.46871 * 305.15915 * 3 2 1 6 6 H 1.08004 * 119.99870 * 119.99872 * 5 3 2 7 7 C 1.37870 * 120.00160 * 300.00089 * 5 3 2 8 8 N 1.31514 * 120.00146 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00056 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47124 * 89.99599 * 9 7 5 11 11 H 1.48503 * 109.47064 * 209.99997 * 9 7 5 12 12 H 1.48499 * 109.47215 * 329.99634 * 9 7 5 13 13 N 1.46899 * 109.46947 * 65.15697 * 3 2 1 14 14 C 1.46900 * 110.99907 * 85.97633 * 13 3 2 15 15 C 1.50698 * 109.47384 * 174.53540 * 14 13 3 16 16 O 1.21279 * 119.99764 * 0.02562 * 15 14 13 17 17 N 1.34774 * 120.00123 * 179.97438 * 15 14 13 18 18 C 1.46495 * 120.00220 * 180.02562 * 17 15 14 19 19 C 1.53006 * 109.47539 * 180.02562 * 18 17 15 20 20 H 1.09004 * 109.69803 * 305.58424 * 19 18 17 21 21 C 1.53464 * 109.71010 * 184.99978 * 19 18 17 22 22 O 1.43173 * 108.24126 * 180.57815 * 21 19 18 23 23 C 1.36113 * 116.71195 * 46.20222 * 22 21 19 24 24 C 1.38702 * 119.39666 * 162.93288 * 23 22 21 25 25 C 1.38191 * 120.06350 * 179.67248 * 24 23 22 26 26 C 1.38251 * 120.11456 * 0.04501 * 25 24 23 27 27 C 1.38190 * 120.11363 * 0.02562 * 26 25 24 28 28 C 1.38705 * 120.06901 * 0.03287 * 27 26 25 29 29 O 1.36098 * 119.40162 * 179.84391 * 28 27 26 30 30 H 1.09004 * 109.46797 * 54.84930 * 1 2 3 31 31 H 1.08998 * 109.47094 * 174.85337 * 1 2 3 32 32 H 1.09000 * 109.46699 * 294.85118 * 1 2 3 33 33 H 1.09004 * 109.46874 * 239.99621 * 2 1 3 34 34 H 1.08997 * 109.46878 * 120.00419 * 2 1 3 35 35 H 0.96996 * 120.00226 * 180.02562 * 8 7 5 36 36 H 1.00894 * 111.00467 * 322.01945 * 13 3 2 37 37 H 1.08999 * 109.47098 * 54.52922 * 14 13 3 38 38 H 1.09007 * 109.46804 * 294.53649 * 14 13 3 39 39 H 0.97000 * 119.99735 * 0.02562 * 17 15 14 40 40 H 1.08999 * 109.47546 * 59.99779 * 18 17 15 41 41 H 1.09007 * 109.47104 * 300.00048 * 18 17 15 42 42 H 1.08998 * 109.70952 * 300.26296 * 21 19 18 43 43 H 1.09003 * 109.71381 * 60.88881 * 21 19 18 44 44 H 1.07999 * 119.96438 * 359.68245 * 24 23 22 45 45 H 1.08006 * 119.94182 * 180.02562 * 25 24 23 46 46 H 1.08001 * 119.94012 * 180.02562 * 26 25 24 47 47 H 1.08001 * 119.96546 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1262 1.4437 -0.0925 5 6 1.4362 2.1888 -1.1616 6 1 0.8271 3.0627 -0.9840 7 6 1.6612 1.7559 -2.4511 8 7 2.4034 0.6919 -2.6675 9 14 0.9132 2.6814 -3.8910 10 1 1.8554 3.7356 -4.3451 11 1 0.6536 1.7357 -5.0062 12 1 -0.3641 3.3086 -3.4665 13 7 1.6548 2.0980 1.2568 14 6 2.6442 1.8380 2.3111 15 6 2.2879 2.6321 3.5413 16 8 1.3061 3.3441 3.5402 17 7 3.0596 2.5502 4.6432 18 6 2.7130 3.3217 5.8393 19 6 3.7435 3.0510 6.9374 20 1 3.8207 1.9778 7.1124 21 6 3.3183 3.7572 8.2318 22 8 4.3089 3.4950 9.2317 23 6 5.6094 3.6423 8.8579 24 6 6.5893 3.7565 9.8330 25 6 7.9147 3.8999 9.4691 26 6 8.2676 3.9308 8.1328 27 6 7.2962 3.8190 7.1563 28 6 5.9639 3.6761 7.5146 29 8 5.0180 3.5704 6.5418 30 1 -0.3633 0.5917 -0.8403 31 1 -0.3633 -1.0235 -0.0922 32 1 -0.3633 0.4319 0.9325 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 2.5620 0.3875 -3.5747 36 1 0.7326 1.8095 1.5473 37 1 3.6335 2.1335 1.9618 38 1 2.6467 0.7751 2.5528 39 1 3.8446 1.9804 4.6442 40 1 1.7236 3.0261 6.1883 41 1 2.7105 4.3847 5.5980 42 1 3.2466 4.8309 8.0582 43 1 2.3531 3.3722 8.5607 44 1 6.3160 3.7332 10.8776 45 1 8.6761 3.9882 10.2300 46 1 9.3044 4.0426 7.8516 47 1 7.5747 3.8431 6.1131 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581734736.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:19 Heat of formation + Delta-G solvation = -79.675233 kcal Electronic energy + Delta-G solvation = -28041.789917 eV Core-core repulsion = 23997.307116 eV Total energy + Delta-G solvation = -4044.482800 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.69541 -39.45758 -38.14779 -37.65953 -36.32025 -34.90869 -32.58215 -31.91002 -31.01808 -30.63056 -29.24279 -27.50195 -26.31010 -24.77178 -23.60205 -23.16377 -22.92675 -21.21615 -20.22869 -19.31195 -19.16832 -17.94207 -17.54258 -16.87071 -16.18312 -15.86702 -15.58279 -15.47023 -15.36359 -14.86279 -14.80874 -14.64290 -14.40724 -14.20706 -14.03534 -13.61609 -13.20820 -13.03269 -12.89163 -12.61238 -12.33637 -12.26687 -12.16596 -11.87618 -11.58798 -11.51583 -11.39558 -10.90342 -10.86608 -10.76967 -10.50508 -10.02364 -9.87261 -9.57741 -9.52203 -9.09892 -9.02788 -8.96308 -8.45047 -8.33078 -7.22724 -5.96705 -3.97389 0.92457 0.93712 2.53990 2.74626 2.94417 3.08471 3.35342 3.35420 3.41532 3.46804 3.85893 4.16728 4.24254 4.31547 4.47088 4.62440 4.69943 4.86665 4.93997 5.00700 5.05024 5.12667 5.22443 5.35202 5.38811 5.48234 5.52683 5.77986 5.80398 5.83064 5.88770 6.10380 6.25399 6.34199 6.36183 6.37020 6.53095 6.55961 6.87814 7.02934 7.20311 7.25126 7.50544 7.55566 7.68756 7.90848 8.26071 8.44003 8.54322 8.61694 9.09066 9.66136 11.10557 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021592 B = 0.001963 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.436005 B =14259.597323 C =14836.033039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.146 4.146 3 C 0.216 3.784 4 H 0.034 0.966 5 C -0.486 4.486 6 H 0.063 0.937 7 C 0.056 3.944 8 N -0.898 5.898 9 Si 0.895 3.105 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.274 1.274 13 N -0.667 5.667 14 C 0.044 3.956 15 C 0.515 3.485 16 O -0.522 6.522 17 N -0.738 5.738 18 C 0.133 3.867 19 C 0.040 3.960 20 H 0.093 0.907 21 C 0.030 3.970 22 O -0.305 6.305 23 C 0.046 3.954 24 C -0.115 4.115 25 C -0.118 4.118 26 C -0.115 4.115 27 C -0.113 4.113 28 C 0.054 3.946 29 O -0.298 6.298 30 H 0.070 0.930 31 H 0.024 0.976 32 H 0.028 0.972 33 H 0.094 0.906 34 H 0.010 0.990 35 H 0.259 0.741 36 H 0.336 0.664 37 H 0.096 0.904 38 H 0.047 0.953 39 H 0.402 0.598 40 H 0.091 0.909 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.127 0.873 44 H 0.133 0.867 45 H 0.131 0.869 46 H 0.132 0.868 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.380 2.541 25.982 27.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.186 4.186 3 C 0.108 3.892 4 H 0.052 0.948 5 C -0.525 4.525 6 H 0.082 0.918 7 C -0.144 4.144 8 N -0.538 5.538 9 Si 0.723 3.277 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.199 1.199 13 N -0.300 5.300 14 C -0.089 4.089 15 C 0.302 3.698 16 O -0.396 6.396 17 N -0.393 5.393 18 C 0.009 3.991 19 C -0.017 4.017 20 H 0.111 0.889 21 C -0.046 4.046 22 O -0.220 6.220 23 C 0.002 3.998 24 C -0.133 4.133 25 C -0.136 4.136 26 C -0.134 4.134 27 C -0.131 4.131 28 C 0.009 3.991 29 O -0.213 6.213 30 H 0.089 0.911 31 H 0.043 0.957 32 H 0.047 0.953 33 H 0.113 0.887 34 H 0.028 0.972 35 H 0.069 0.931 36 H 0.155 0.845 37 H 0.114 0.886 38 H 0.065 0.935 39 H 0.236 0.764 40 H 0.109 0.891 41 H 0.099 0.901 42 H 0.101 0.899 43 H 0.145 0.855 44 H 0.151 0.849 45 H 0.149 0.851 46 H 0.150 0.850 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 8.898 3.573 25.609 27.346 hybrid contribution -0.226 -0.848 -0.607 1.067 sum 8.673 2.725 25.002 26.604 Atomic orbital electron populations 1.21611 0.97574 0.98725 1.00982 1.22129 0.95187 1.00995 1.00260 1.19277 0.96041 0.88618 0.85231 0.94839 1.21064 1.30452 1.11491 0.89496 0.91833 1.24908 0.95596 0.95189 0.98738 1.69874 1.39153 1.24032 1.20695 0.86542 0.79678 0.79489 0.81977 1.20820 1.21494 1.19884 1.60530 1.03486 1.63442 1.02522 1.21779 0.99780 0.96507 0.90852 1.21140 0.82547 0.82251 0.83873 1.90681 1.27019 1.39201 1.82734 1.45943 1.31152 1.49148 1.13102 1.21173 0.95663 0.98282 0.84006 1.23441 0.83469 0.99058 0.95686 0.88900 1.23587 0.91974 1.01553 0.87498 1.86325 1.12341 1.85325 1.37976 1.18961 0.84733 1.04117 0.92035 1.20451 0.91396 1.02823 0.98673 1.20934 0.95165 1.01077 0.96472 1.20956 0.99283 1.00782 0.92346 1.20529 0.88943 1.02650 1.01024 1.18964 0.90038 1.03639 0.86471 1.86400 1.20990 1.80490 1.33438 0.91094 0.95722 0.95322 0.88731 0.97173 0.93135 0.84502 0.88644 0.93535 0.76354 0.89129 0.90145 0.89890 0.85511 0.84867 0.85078 0.84991 0.84573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.82 9.40 37.16 0.35 -2.47 16 2 C -0.15 -3.36 5.51 -26.73 -0.15 -3.51 16 3 C 0.22 5.28 2.33 -68.87 -0.16 5.12 16 4 H 0.03 0.89 7.70 -51.93 -0.40 0.49 16 5 C -0.49 -13.26 7.25 -34.44 -0.25 -13.51 16 6 H 0.06 1.80 7.81 -52.48 -0.41 1.39 16 7 C 0.06 1.53 5.28 -17.82 -0.09 1.44 16 8 N -0.90 -25.11 11.38 55.43 0.63 -24.48 16 9 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 13 N -0.67 -14.54 5.77 -109.22 -0.63 -15.17 16 14 C 0.04 0.76 5.99 -4.98 -0.03 0.73 16 15 C 0.51 8.35 7.88 -10.99 -0.09 8.26 16 16 O -0.52 -10.46 16.32 5.56 0.09 -10.37 16 17 N -0.74 -8.67 5.52 -60.29 -0.33 -9.00 16 18 C 0.13 1.30 5.36 -4.04 -0.02 1.28 16 19 C 0.04 0.34 3.06 -26.49 -0.08 0.26 16 20 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 21 C 0.03 0.22 6.56 37.40 0.25 0.46 16 22 O -0.31 -2.93 10.42 -32.89 -0.34 -3.27 16 23 C 0.05 0.46 6.49 -39.14 -0.25 0.21 16 24 C -0.11 -0.95 9.96 -39.43 -0.39 -1.34 16 25 C -0.12 -0.82 10.04 -39.59 -0.40 -1.21 16 26 C -0.12 -0.84 10.04 -39.59 -0.40 -1.23 16 27 C -0.11 -1.02 9.96 -39.43 -0.39 -1.41 16 28 C 0.05 0.56 6.49 -39.14 -0.25 0.30 16 29 O -0.30 -3.17 10.04 -32.84 -0.33 -3.50 16 30 H 0.07 1.67 6.85 -51.93 -0.36 1.32 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.03 0.56 6.63 -51.93 -0.34 0.21 16 33 H 0.09 2.43 6.23 -51.93 -0.32 2.11 16 34 H 0.01 0.20 7.51 -51.93 -0.39 -0.19 16 35 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 36 H 0.34 7.30 6.54 -39.30 -0.26 7.04 16 37 H 0.10 1.60 7.92 -51.93 -0.41 1.19 16 38 H 0.05 0.73 7.55 -51.92 -0.39 0.34 16 39 H 0.40 3.91 8.47 -40.82 -0.35 3.56 16 40 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.08 0.89 8.14 -51.92 -0.42 0.47 16 42 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.13 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 45 H 0.13 0.57 8.06 -52.48 -0.42 0.14 16 46 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 47 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 384.54 15.07 5.79 5.79 Total: -1.00 -32.55 384.54 -9.50 -42.05 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -6.99 Total: 8.05 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: -2.36 Total: -6.61 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: -0.33 Total: -48.65 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: -0.58 Total: -17.14 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.55 -9.50 -42.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581734736.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.626 kcal (2) G-P(sol) polarization free energy of solvation -32.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds