Wall clock time and date at job start Tue Mar 31 2020 17:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47510 * 2 1 4 4 H 1.08996 * 109.47163 * 185.16422 * 3 2 1 5 5 C 1.50704 * 109.46871 * 305.15915 * 3 2 1 6 6 H 1.08004 * 119.99870 * 119.99872 * 5 3 2 7 7 C 1.37870 * 120.00160 * 300.00089 * 5 3 2 8 8 N 1.31514 * 120.00146 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00056 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47124 * 89.99599 * 9 7 5 11 11 H 1.48503 * 109.47064 * 209.99997 * 9 7 5 12 12 H 1.48499 * 109.47215 * 329.99634 * 9 7 5 13 13 N 1.46899 * 109.46947 * 65.15697 * 3 2 1 14 14 C 1.46900 * 110.99907 * 85.97633 * 13 3 2 15 15 C 1.50698 * 109.47384 * 174.53540 * 14 13 3 16 16 O 1.21279 * 119.99764 * 0.02562 * 15 14 13 17 17 N 1.34774 * 120.00123 * 179.97438 * 15 14 13 18 18 C 1.46495 * 120.00220 * 180.02562 * 17 15 14 19 19 C 1.53006 * 109.47539 * 180.02562 * 18 17 15 20 20 H 1.09004 * 109.69803 * 305.58424 * 19 18 17 21 21 C 1.53464 * 109.71010 * 184.99978 * 19 18 17 22 22 O 1.43173 * 108.24126 * 180.57815 * 21 19 18 23 23 C 1.36113 * 116.71195 * 46.20222 * 22 21 19 24 24 C 1.38702 * 119.39666 * 162.93288 * 23 22 21 25 25 C 1.38191 * 120.06350 * 179.67248 * 24 23 22 26 26 C 1.38251 * 120.11456 * 0.04501 * 25 24 23 27 27 C 1.38190 * 120.11363 * 0.02562 * 26 25 24 28 28 C 1.38705 * 120.06901 * 0.03287 * 27 26 25 29 29 O 1.36098 * 119.40162 * 179.84391 * 28 27 26 30 30 H 1.09004 * 109.46797 * 54.84930 * 1 2 3 31 31 H 1.08998 * 109.47094 * 174.85337 * 1 2 3 32 32 H 1.09000 * 109.46699 * 294.85118 * 1 2 3 33 33 H 1.09004 * 109.46874 * 239.99621 * 2 1 3 34 34 H 1.08997 * 109.46878 * 120.00419 * 2 1 3 35 35 H 0.96996 * 120.00226 * 180.02562 * 8 7 5 36 36 H 1.00894 * 111.00467 * 322.01945 * 13 3 2 37 37 H 1.08999 * 109.47098 * 54.52922 * 14 13 3 38 38 H 1.09007 * 109.46804 * 294.53649 * 14 13 3 39 39 H 0.97000 * 119.99735 * 0.02562 * 17 15 14 40 40 H 1.08999 * 109.47546 * 59.99779 * 18 17 15 41 41 H 1.09007 * 109.47104 * 300.00048 * 18 17 15 42 42 H 1.08998 * 109.70952 * 300.26296 * 21 19 18 43 43 H 1.09003 * 109.71381 * 60.88881 * 21 19 18 44 44 H 1.07999 * 119.96438 * 359.68245 * 24 23 22 45 45 H 1.08006 * 119.94182 * 180.02562 * 25 24 23 46 46 H 1.08001 * 119.94012 * 180.02562 * 26 25 24 47 47 H 1.08001 * 119.96546 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1262 1.4437 -0.0925 5 6 1.4362 2.1888 -1.1616 6 1 0.8271 3.0627 -0.9840 7 6 1.6612 1.7559 -2.4511 8 7 2.4034 0.6919 -2.6675 9 14 0.9132 2.6814 -3.8910 10 1 1.8554 3.7356 -4.3451 11 1 0.6536 1.7357 -5.0062 12 1 -0.3641 3.3086 -3.4665 13 7 1.6548 2.0980 1.2568 14 6 2.6442 1.8380 2.3111 15 6 2.2879 2.6321 3.5413 16 8 1.3061 3.3441 3.5402 17 7 3.0596 2.5502 4.6432 18 6 2.7130 3.3217 5.8393 19 6 3.7435 3.0510 6.9374 20 1 3.8207 1.9778 7.1124 21 6 3.3183 3.7572 8.2318 22 8 4.3089 3.4950 9.2317 23 6 5.6094 3.6423 8.8579 24 6 6.5893 3.7565 9.8330 25 6 7.9147 3.8999 9.4691 26 6 8.2676 3.9308 8.1328 27 6 7.2962 3.8190 7.1563 28 6 5.9639 3.6761 7.5146 29 8 5.0180 3.5704 6.5418 30 1 -0.3633 0.5917 -0.8403 31 1 -0.3633 -1.0235 -0.0922 32 1 -0.3633 0.4319 0.9325 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 2.5620 0.3875 -3.5747 36 1 0.7326 1.8095 1.5473 37 1 3.6335 2.1335 1.9618 38 1 2.6467 0.7751 2.5528 39 1 3.8446 1.9804 4.6442 40 1 1.7236 3.0261 6.1883 41 1 2.7105 4.3847 5.5980 42 1 3.2466 4.8309 8.0582 43 1 2.3531 3.3722 8.5607 44 1 6.3160 3.7332 10.8776 45 1 8.6761 3.9882 10.2300 46 1 9.3044 4.0426 7.8516 47 1 7.5747 3.8431 6.1131 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581734736.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:18 Heat of formation + Delta-G solvation = -102.213523 kcal Electronic energy + Delta-G solvation = -28042.767250 eV Core-core repulsion = 23997.307116 eV Total energy + Delta-G solvation = -4045.460134 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.35319 -40.70983 -38.82653 -38.35155 -38.04918 -35.96735 -34.45331 -32.89961 -32.28502 -31.61656 -29.97411 -28.99026 -27.58887 -26.12232 -25.05060 -24.31167 -23.63204 -21.97801 -21.40294 -21.10346 -19.85663 -18.73100 -18.57298 -17.97175 -17.57266 -17.14370 -16.78563 -16.62040 -16.21147 -16.12094 -15.69959 -15.64851 -15.43488 -15.24491 -14.89931 -14.78728 -14.52621 -14.49130 -14.23632 -13.90748 -13.69678 -13.54319 -13.05606 -12.83167 -12.82707 -12.76461 -12.67033 -12.43423 -12.17216 -12.05163 -11.94140 -11.69580 -11.53208 -11.42247 -11.11301 -10.75610 -10.41690 -10.18091 -9.64730 -9.09759 -8.93350 -8.05411 -6.12412 0.30575 0.31933 1.42911 1.44573 1.54566 1.63910 1.85922 2.05289 2.17891 2.47208 2.74435 3.18400 3.23478 3.45328 3.59655 3.70131 3.75335 3.93952 4.11274 4.17617 4.24327 4.36988 4.41522 4.43908 4.46500 4.47774 4.56558 4.60465 4.63431 4.67175 4.76787 4.89878 5.10988 5.17924 5.22983 5.33166 5.33811 5.42758 5.52925 5.71196 5.71924 5.75833 5.82748 5.88396 6.30366 6.37434 6.44873 6.67650 6.80533 6.98002 7.25483 7.54721 8.99811 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021592 B = 0.001963 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.436005 B =14259.597323 C =14836.033039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.139 4.139 3 C 0.222 3.778 4 H 0.008 0.992 5 C -0.501 4.501 6 H 0.046 0.954 7 C 0.016 3.984 8 N -0.917 5.917 9 Si 0.949 3.051 10 H -0.280 1.280 11 H -0.283 1.283 12 H -0.274 1.274 13 N -0.682 5.682 14 C 0.043 3.957 15 C 0.521 3.479 16 O -0.565 6.565 17 N -0.719 5.719 18 C 0.135 3.865 19 C 0.047 3.953 20 H 0.103 0.897 21 C 0.029 3.971 22 O -0.316 6.316 23 C 0.027 3.973 24 C -0.123 4.123 25 C -0.114 4.114 26 C -0.114 4.114 27 C -0.129 4.129 28 C 0.031 3.969 29 O -0.318 6.318 30 H 0.043 0.957 31 H 0.044 0.956 32 H 0.044 0.956 33 H 0.066 0.934 34 H 0.033 0.967 35 H 0.260 0.740 36 H 0.335 0.665 37 H 0.098 0.902 38 H 0.071 0.929 39 H 0.414 0.586 40 H 0.107 0.893 41 H 0.067 0.933 42 H 0.082 0.918 43 H 0.155 0.845 44 H 0.147 0.853 45 H 0.161 0.839 46 H 0.157 0.843 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.988 2.212 27.780 29.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.178 4.178 3 C 0.114 3.886 4 H 0.026 0.974 5 C -0.540 4.540 6 H 0.064 0.936 7 C -0.182 4.182 8 N -0.557 5.557 9 Si 0.776 3.224 10 H -0.206 1.206 11 H -0.208 1.208 12 H -0.199 1.199 13 N -0.314 5.314 14 C -0.090 4.090 15 C 0.307 3.693 16 O -0.443 6.443 17 N -0.373 5.373 18 C 0.011 3.989 19 C -0.010 4.010 20 H 0.121 0.879 21 C -0.047 4.047 22 O -0.230 6.230 23 C -0.018 4.018 24 C -0.142 4.142 25 C -0.132 4.132 26 C -0.132 4.132 27 C -0.148 4.148 28 C -0.014 4.014 29 O -0.234 6.234 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.084 0.916 34 H 0.052 0.948 35 H 0.069 0.931 36 H 0.155 0.845 37 H 0.116 0.884 38 H 0.088 0.912 39 H 0.251 0.749 40 H 0.124 0.876 41 H 0.086 0.914 42 H 0.100 0.900 43 H 0.173 0.827 44 H 0.165 0.835 45 H 0.179 0.821 46 H 0.175 0.825 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 9.547 3.232 27.447 29.239 hybrid contribution -0.313 -0.730 -1.070 1.333 sum 9.235 2.502 26.377 28.059 Atomic orbital electron populations 1.21503 0.96342 0.99640 1.00639 1.21969 0.96229 0.99708 0.99928 1.19028 0.94178 0.89491 0.85898 0.97358 1.21252 1.30450 1.11283 0.91011 0.93609 1.25524 0.95993 0.95922 1.00789 1.69979 1.39820 1.24846 1.21084 0.85693 0.78865 0.78465 0.79403 1.20631 1.20836 1.19854 1.60350 1.04420 1.63648 1.02963 1.21817 0.98617 0.98188 0.90361 1.20843 0.82363 0.81611 0.84436 1.90668 1.28986 1.41069 1.83555 1.45743 1.30493 1.48544 1.12562 1.21279 0.97017 0.97202 0.83419 1.23419 0.82481 0.99656 0.95437 0.87947 1.23759 0.92598 1.01609 0.86726 1.86304 1.12546 1.85522 1.38669 1.19230 0.85249 1.05008 0.92298 1.20785 0.91763 1.02491 0.99158 1.21326 0.95321 0.99445 0.97078 1.21308 1.00132 0.99555 0.92245 1.20770 0.89062 1.03201 1.01729 1.19207 0.90443 1.04997 0.86710 1.86346 1.21788 1.80970 1.34252 0.93781 0.93657 0.93733 0.91577 0.94821 0.93113 0.84542 0.88391 0.91176 0.74948 0.87555 0.91440 0.90008 0.82708 0.83516 0.82135 0.82521 0.84461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.19 9.40 71.98 0.68 -4.52 16 2 C -0.14 -6.31 5.51 30.59 0.17 -6.14 16 3 C 0.22 10.99 2.33 44.17 0.10 11.09 16 4 H 0.01 0.46 7.70 -2.39 -0.02 0.44 16 5 C -0.50 -27.79 7.25 25.60 0.19 -27.61 16 6 H 0.05 2.65 7.81 -2.91 -0.02 2.63 16 7 C 0.02 0.89 5.28 84.65 0.45 1.33 16 8 N -0.92 -51.78 11.38 21.44 0.24 -51.54 16 9 Si 0.95 44.50 29.54 68.60 2.03 46.53 16 10 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 12 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 13 N -0.68 -29.71 5.77 -499.47 -2.88 -32.59 16 14 C 0.04 1.45 5.99 85.56 0.51 1.96 16 15 C 0.52 16.48 7.88 87.66 0.69 17.17 16 16 O -0.57 -22.53 16.32 -3.03 -0.05 -22.58 16 17 N -0.72 -16.02 5.52 -463.06 -2.56 -18.57 16 18 C 0.13 2.49 5.36 86.38 0.46 2.95 16 19 C 0.05 0.73 3.06 30.75 0.09 0.83 16 20 H 0.10 1.41 8.14 -2.38 -0.02 1.39 16 21 C 0.03 0.38 6.56 72.14 0.47 0.86 16 22 O -0.32 -5.74 10.42 -82.60 -0.86 -6.60 16 23 C 0.03 0.51 6.49 22.56 0.15 0.66 16 24 C -0.12 -1.85 9.96 22.37 0.22 -1.62 16 25 C -0.11 -1.31 10.04 22.26 0.22 -1.09 16 26 C -0.11 -1.45 10.04 22.26 0.22 -1.22 16 27 C -0.13 -2.25 9.96 22.37 0.22 -2.02 16 28 C 0.03 0.63 6.49 22.56 0.15 0.78 16 29 O -0.32 -6.66 10.04 -82.43 -0.83 -7.49 16 30 H 0.04 2.07 6.85 -2.39 -0.02 2.05 16 31 H 0.04 1.67 8.14 -2.39 -0.02 1.66 16 32 H 0.04 1.70 6.63 -2.39 -0.02 1.68 16 33 H 0.07 3.41 6.23 -2.38 -0.01 3.40 16 34 H 0.03 1.34 7.51 -2.39 -0.02 1.32 16 35 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 36 H 0.34 14.48 6.54 -89.70 -0.59 13.89 16 37 H 0.10 3.25 7.92 -2.39 -0.02 3.23 16 38 H 0.07 2.06 7.55 -2.38 -0.02 2.04 16 39 H 0.41 7.40 8.47 -92.71 -0.79 6.62 16 40 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 42 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.16 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 45 H 0.16 0.84 8.06 -2.91 -0.02 0.81 16 46 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 47 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -71.00 384.54 -0.28 -71.28 By element: Atomic # 1 Polarization: 28.54 SS G_CDS: -0.38 Total: 28.16 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: 5.00 Total: -6.59 kcal Atomic # 7 Polarization: -97.51 SS G_CDS: -5.19 Total: -102.70 kcal Atomic # 8 Polarization: -34.94 SS G_CDS: -1.74 Total: -36.68 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -71.00 -0.28 -71.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581734736.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.932 kcal (2) G-P(sol) polarization free energy of solvation -71.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds