Wall clock time and date at job start Tue Mar 31 2020 17:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46999 * 2 1 4 4 H 1.09002 * 109.47158 * 185.15790 * 3 2 1 5 5 C 1.50706 * 109.46950 * 305.15750 * 3 2 1 6 6 H 1.07995 * 119.99914 * 120.00751 * 5 3 2 7 7 C 1.37875 * 119.99634 * 299.99897 * 5 3 2 8 8 N 1.31513 * 120.00448 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99817 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47130 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46941 * 119.99781 * 9 7 5 12 12 H 1.48498 * 109.47225 * 240.00302 * 9 7 5 13 13 N 1.46899 * 109.47639 * 65.15580 * 3 2 1 14 14 C 1.46898 * 110.99749 * 85.96507 * 13 3 2 15 15 C 1.50702 * 109.46947 * 174.53797 * 14 13 3 16 16 O 1.21281 * 119.99953 * 0.02562 * 15 14 13 17 17 N 1.34783 * 120.00026 * 180.02562 * 15 14 13 18 18 C 1.46498 * 119.99623 * 180.02562 * 17 15 14 19 19 C 1.53011 * 109.46634 * 180.02562 * 18 17 15 20 20 H 1.09000 * 109.70575 * 60.59073 * 19 18 17 21 21 C 1.53477 * 109.73831 * 181.21281 * 19 18 17 22 22 O 1.43177 * 108.24680 * 179.46265 * 21 19 18 23 23 C 1.36107 * 116.70754 * 313.83762 * 22 21 19 24 24 C 1.38700 * 119.39995 * 197.10328 * 23 22 21 25 25 C 1.38192 * 120.07085 * 180.13239 * 24 23 22 26 26 C 1.38242 * 120.11621 * 359.97438 * 25 24 23 27 27 C 1.38202 * 120.11302 * 359.94747 * 26 25 24 28 28 C 1.38705 * 120.06103 * 0.02562 * 27 26 25 29 29 O 1.36110 * 119.38747 * 180.18042 * 28 27 26 30 30 H 1.09006 * 109.46701 * 54.85729 * 1 2 3 31 31 H 1.08996 * 109.46915 * 174.85185 * 1 2 3 32 32 H 1.08993 * 109.47334 * 294.85543 * 1 2 3 33 33 H 1.09000 * 109.47256 * 239.99591 * 2 1 3 34 34 H 1.08999 * 109.46425 * 119.99436 * 2 1 3 35 35 H 0.96995 * 120.00374 * 179.97438 * 8 7 5 36 36 H 1.00903 * 110.99357 * 322.02049 * 13 3 2 37 37 H 1.09005 * 109.46861 * 54.54368 * 14 13 3 38 38 H 1.08993 * 109.47999 * 294.54270 * 14 13 3 39 39 H 0.96991 * 119.99513 * 0.02562 * 17 15 14 40 40 H 1.08991 * 109.47657 * 60.00248 * 18 17 15 41 41 H 1.09007 * 109.46907 * 299.99753 * 18 17 15 42 42 H 1.09007 * 109.70648 * 59.77652 * 21 19 18 43 43 H 1.09002 * 109.71480 * 299.15173 * 21 19 18 44 44 H 1.08003 * 119.96076 * 0.12230 * 24 23 22 45 45 H 1.08003 * 119.94367 * 179.97438 * 25 24 23 46 46 H 1.08004 * 119.94798 * 179.97438 * 26 25 24 47 47 H 1.07993 * 119.97004 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1261 1.4439 -0.0924 5 6 1.4361 2.1888 -1.1617 6 1 0.8270 3.0628 -0.9841 7 6 1.6613 1.7558 -2.4512 8 7 2.4027 0.6914 -2.6674 9 14 0.9133 2.6813 -3.8912 10 1 0.1278 3.8350 -3.3839 11 1 1.9966 3.1731 -4.7799 12 1 0.0213 1.7719 -4.6544 13 7 1.6547 2.0982 1.2568 14 6 2.6440 1.8382 2.3111 15 6 2.2876 2.6323 3.5413 16 8 1.3058 3.3445 3.5400 17 7 3.0598 2.5512 4.6429 18 6 2.7130 3.3229 5.8389 19 6 3.7442 3.0531 6.9367 20 1 4.7332 3.3580 6.5948 21 6 3.3699 3.8352 8.2030 22 8 4.3462 3.5504 9.2108 23 6 4.6861 2.2435 9.3813 24 6 5.3337 1.8545 10.5445 25 6 5.6876 0.5317 10.7308 26 6 5.3970 -0.4075 9.7590 27 6 4.7505 -0.0271 8.5983 28 6 4.3920 1.2989 8.4053 29 8 3.7525 1.6578 7.2586 30 1 -0.3633 0.5916 -0.8404 31 1 -0.3633 -1.0235 -0.0922 32 1 -0.3633 0.4319 0.9324 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 2.5608 0.3866 -3.5746 36 1 0.7324 1.8096 1.5471 37 1 3.6333 2.1337 1.9618 38 1 2.6466 0.7754 2.5529 39 1 3.8451 1.9820 4.6438 40 1 1.7240 3.0267 6.1883 41 1 2.7097 4.3858 5.5972 42 1 2.3837 3.5250 8.5486 43 1 3.3652 4.9036 7.9874 44 1 5.5617 2.5863 11.3054 45 1 6.1922 0.2312 11.6372 46 1 5.6752 -1.4406 9.9072 47 1 4.5242 -0.7628 7.8408 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581734737.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:22 Heat of formation + Delta-G solvation = -79.775981 kcal Electronic energy + Delta-G solvation = -28083.999841 eV Core-core repulsion = 24039.512672 eV Total energy + Delta-G solvation = -4044.487169 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.70433 -39.45145 -38.15575 -37.66880 -36.31443 -34.89377 -32.58097 -31.91362 -31.02776 -30.62615 -29.25652 -27.50071 -26.30916 -24.77008 -23.60643 -23.16237 -22.93957 -21.19746 -20.24075 -19.30995 -19.14910 -17.96133 -17.54989 -16.87063 -16.20034 -15.84826 -15.52957 -15.51302 -15.27424 -15.07710 -14.79796 -14.65330 -14.32345 -14.19673 -14.10041 -13.53380 -13.22498 -13.08989 -12.86361 -12.58402 -12.33525 -12.27336 -12.18835 -11.87964 -11.58722 -11.52375 -11.38629 -10.93050 -10.87867 -10.73898 -10.49962 -10.02186 -9.87281 -9.57200 -9.51851 -9.08859 -9.03781 -8.94843 -8.45997 -8.33867 -7.22491 -5.96947 -3.97595 0.91276 0.92685 2.51556 2.74548 2.95094 3.10450 3.33472 3.34369 3.41582 3.48203 3.85122 4.17040 4.23408 4.31665 4.46958 4.61551 4.69767 4.85998 4.92972 5.00563 5.04701 5.12824 5.23359 5.34976 5.39367 5.48299 5.50926 5.76736 5.79193 5.84007 5.88361 6.09187 6.24263 6.35258 6.36311 6.37896 6.52724 6.56609 6.89056 7.01772 7.20482 7.25765 7.51187 7.56491 7.69283 7.90994 8.26120 8.44554 8.54325 8.61782 9.09282 9.65979 11.10327 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.024279 B = 0.001959 C = 0.001874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.983807 B =14286.166257 C =14941.232958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.146 4.146 3 C 0.215 3.785 4 H 0.034 0.966 5 C -0.485 4.485 6 H 0.064 0.936 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.894 3.106 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.286 1.286 13 N -0.667 5.667 14 C 0.044 3.956 15 C 0.515 3.485 16 O -0.523 6.523 17 N -0.737 5.737 18 C 0.134 3.866 19 C 0.040 3.960 20 H 0.094 0.906 21 C 0.030 3.970 22 O -0.305 6.305 23 C 0.047 3.953 24 C -0.115 4.115 25 C -0.118 4.118 26 C -0.116 4.116 27 C -0.113 4.113 28 C 0.054 3.946 29 O -0.299 6.299 30 H 0.070 0.930 31 H 0.024 0.976 32 H 0.028 0.972 33 H 0.094 0.906 34 H 0.010 0.990 35 H 0.258 0.742 36 H 0.336 0.664 37 H 0.095 0.905 38 H 0.048 0.952 39 H 0.403 0.597 40 H 0.078 0.922 41 H 0.092 0.908 42 H 0.083 0.917 43 H 0.128 0.872 44 H 0.134 0.866 45 H 0.131 0.869 46 H 0.132 0.868 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.493 -0.312 27.079 28.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.186 4.186 3 C 0.108 3.892 4 H 0.052 0.948 5 C -0.524 4.524 6 H 0.082 0.918 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.722 3.278 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.212 1.212 13 N -0.300 5.300 14 C -0.089 4.089 15 C 0.302 3.698 16 O -0.397 6.397 17 N -0.393 5.393 18 C 0.009 3.991 19 C -0.017 4.017 20 H 0.112 0.888 21 C -0.046 4.046 22 O -0.219 6.219 23 C 0.002 3.998 24 C -0.133 4.133 25 C -0.136 4.136 26 C -0.134 4.134 27 C -0.132 4.132 28 C 0.009 3.991 29 O -0.214 6.214 30 H 0.089 0.911 31 H 0.043 0.957 32 H 0.047 0.953 33 H 0.113 0.887 34 H 0.029 0.971 35 H 0.068 0.932 36 H 0.155 0.845 37 H 0.113 0.887 38 H 0.065 0.935 39 H 0.237 0.763 40 H 0.096 0.904 41 H 0.110 0.890 42 H 0.101 0.899 43 H 0.145 0.855 44 H 0.151 0.849 45 H 0.149 0.851 46 H 0.150 0.850 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 7.055 0.788 26.688 27.615 hybrid contribution -0.149 -0.744 -0.656 1.003 sum 6.905 0.044 26.032 26.932 Atomic orbital electron populations 1.21610 0.97582 0.98741 1.00966 1.22129 0.95189 1.00990 1.00273 1.19286 0.96030 0.88639 0.85252 0.94848 1.21105 1.30345 1.11490 0.89481 0.91773 1.24913 0.95592 0.95213 0.98752 1.69884 1.39207 1.24045 1.20603 0.86494 0.78945 0.79922 0.82407 1.19684 1.21229 1.21246 1.60549 1.03518 1.63397 1.02516 1.21775 0.99712 0.96610 0.90838 1.21145 0.82538 0.82222 0.83915 1.90681 1.26860 1.39260 1.82886 1.45914 1.31292 1.49251 1.12804 1.21186 0.97118 0.97480 0.83278 1.23463 1.01697 0.80879 0.95641 0.88825 1.23594 0.91910 1.02460 0.86646 1.86327 1.58040 1.21816 1.55750 1.18960 1.02149 0.83651 0.95040 1.20455 1.01036 0.96753 0.95093 1.20932 1.00906 0.92004 0.99789 1.20955 0.99138 1.00046 0.93248 1.20519 1.00062 0.93277 0.99318 1.18960 0.99481 0.94299 0.86369 1.86378 1.71922 1.25148 1.37965 0.91122 0.95712 0.95306 0.88735 0.97144 0.93193 0.84483 0.88704 0.93458 0.76277 0.90377 0.89036 0.89931 0.85462 0.84855 0.85074 0.85003 0.84618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.84 9.40 37.16 0.35 -2.49 16 2 C -0.15 -3.38 5.51 -26.73 -0.15 -3.53 16 3 C 0.22 5.27 2.33 -68.86 -0.16 5.11 16 4 H 0.03 0.88 7.70 -51.93 -0.40 0.48 16 5 C -0.49 -13.22 7.25 -34.44 -0.25 -13.47 16 6 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 7 C 0.06 1.52 5.28 -17.82 -0.09 1.42 16 8 N -0.90 -25.09 11.38 55.43 0.63 -24.46 16 9 Si 0.89 21.49 29.54 -169.99 -5.02 16.46 16 10 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 N -0.67 -14.56 5.77 -109.22 -0.63 -15.19 16 14 C 0.04 0.76 5.99 -4.98 -0.03 0.73 16 15 C 0.51 8.37 7.88 -10.98 -0.09 8.28 16 16 O -0.52 -10.48 16.32 5.56 0.09 -10.39 16 17 N -0.74 -8.71 5.45 -60.29 -0.33 -9.04 16 18 C 0.13 1.31 5.40 -4.04 -0.02 1.29 16 19 C 0.04 0.34 3.11 -26.48 -0.08 0.25 16 20 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 21 C 0.03 0.22 6.56 37.40 0.25 0.46 16 22 O -0.31 -2.92 10.42 -32.86 -0.34 -3.26 16 23 C 0.05 0.46 6.49 -39.14 -0.25 0.21 16 24 C -0.11 -0.94 9.96 -39.43 -0.39 -1.33 16 25 C -0.12 -0.80 10.04 -39.60 -0.40 -1.20 16 26 C -0.12 -0.82 10.04 -39.59 -0.40 -1.22 16 27 C -0.11 -0.99 9.96 -39.42 -0.39 -1.39 16 28 C 0.05 0.55 6.49 -39.14 -0.25 0.29 16 29 O -0.30 -3.10 9.83 -32.87 -0.32 -3.43 16 30 H 0.07 1.67 6.85 -51.93 -0.36 1.32 16 31 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.03 0.57 6.63 -51.93 -0.34 0.22 16 33 H 0.09 2.44 6.22 -51.93 -0.32 2.12 16 34 H 0.01 0.21 7.51 -51.93 -0.39 -0.18 16 35 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 36 H 0.34 7.36 6.54 -39.29 -0.26 7.10 16 37 H 0.09 1.56 7.92 -51.93 -0.41 1.15 16 38 H 0.05 0.76 7.55 -51.93 -0.39 0.37 16 39 H 0.40 3.98 8.35 -40.82 -0.34 3.64 16 40 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.08 0.58 8.14 -51.92 -0.42 0.15 16 43 H 0.13 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 45 H 0.13 0.56 8.06 -52.48 -0.42 0.13 16 46 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 47 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 384.22 15.07 5.79 5.79 Total: -1.00 -32.47 384.22 -9.49 -41.95 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -6.99 Total: 8.13 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: -2.37 Total: -6.57 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: -0.33 Total: -48.69 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: -0.57 Total: -17.08 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.47 -9.49 -41.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581734737.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.822 kcal (2) G-P(sol) polarization free energy of solvation -32.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds